Wall clock time and date at job start Mon Mar 30 2020 07:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35765 * 117.00257 * 2 1 4 4 N 1.32171 * 119.71315 * 0.02562 * 3 2 1 5 5 C 1.31992 * 121.70335 * 180.02562 * 4 3 2 6 6 C 1.50693 * 119.53106 * 179.97438 * 5 4 3 7 7 C 1.38055 * 120.93313 * 359.97438 * 5 4 3 8 8 C 1.38773 * 119.33583 * 0.02562 * 7 5 4 9 9 C 1.38800 * 118.43862 * 359.97438 * 8 7 5 10 10 O 1.36000 * 120.49349 * 179.97438 * 9 8 7 11 11 C 1.42903 * 116.99713 * 354.67674 * 10 9 8 12 12 C 1.53000 * 109.47245 * 179.30494 * 11 10 9 13 13 C 1.50695 * 115.55337 * 279.84691 * 12 11 10 14 14 H 1.07996 * 120.00460 * 144.24346 * 13 12 11 15 15 C 1.37885 * 119.99663 * 324.24032 * 13 12 11 16 16 N 1.31512 * 120.00206 * 338.09320 * 15 13 12 17 17 Si 1.86798 * 119.99770 * 158.09292 * 15 13 12 18 18 H 1.48501 * 109.47274 * 90.00190 * 17 15 13 19 19 H 1.48500 * 109.47369 * 210.00242 * 17 15 13 20 20 H 1.48501 * 109.47418 * 330.00021 * 17 15 13 21 21 C 1.52997 * 117.49777 * 134.13048 * 12 11 10 22 22 C 1.52990 * 60.00061 * 252.51702 * 21 12 11 23 23 H 1.09005 * 109.46869 * 300.00046 * 1 2 3 24 24 H 1.09000 * 109.47316 * 60.00057 * 1 2 3 25 25 H 1.09001 * 109.47087 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47328 * 90.00457 * 6 5 4 27 27 H 1.09002 * 109.47013 * 209.99725 * 6 5 4 28 28 H 1.09002 * 109.47200 * 329.99761 * 6 5 4 29 29 H 1.08001 * 120.32740 * 179.97438 * 7 5 4 30 30 H 1.07997 * 120.78195 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47488 * 299.31039 * 11 10 9 32 32 H 1.09001 * 109.46797 * 59.30812 * 11 10 9 33 33 H 0.96992 * 120.00260 * 185.34856 * 16 15 13 34 34 H 1.09003 * 117.49865 * 0.02562 * 21 12 11 35 35 H 1.09001 * 117.49481 * 145.02266 * 21 12 11 36 36 H 1.09004 * 117.50042 * 252.51130 * 22 21 12 37 37 H 1.09005 * 117.52204 * 107.48970 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 7 1.3201 2.3145 0.0005 5 6 1.8781 3.5107 0.0000 6 6 1.0040 4.7382 0.0001 7 6 3.2513 3.6531 -0.0005 8 6 4.0524 2.5199 -0.0011 9 6 3.4373 1.2756 -0.0005 10 8 4.1820 0.1376 -0.0016 11 6 5.5979 0.2891 -0.1214 12 6 6.2630 -1.0883 -0.0864 13 6 6.4407 -1.6897 1.2839 14 1 6.3369 -2.7556 1.4235 15 6 6.7359 -0.8791 2.3595 16 7 7.2784 0.3027 2.1630 17 14 6.3652 -1.4595 4.0959 18 1 7.5423 -2.1853 4.6372 19 1 6.0679 -0.2867 4.9570 20 1 5.1906 -2.3679 4.0741 21 6 7.3425 -1.3784 -1.1311 22 6 5.9696 -2.0440 -1.2446 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7937 5.0344 1.0277 27 1 1.5180 5.5503 -0.5141 28 1 0.0681 4.5177 -0.5134 29 1 3.6976 4.6366 -0.0013 30 1 5.1291 2.6042 -0.0019 31 1 5.8322 0.7818 -1.0650 32 1 5.9699 0.8933 0.7061 33 1 7.5574 0.8403 2.9205 34 1 7.5791 -0.5877 -1.8431 35 1 8.1816 -2.0041 -0.8273 36 1 5.9055 -3.1077 -1.0155 37 1 5.3025 -1.6916 -2.0313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600678061.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:14 Heat of formation + Delta-G solvation = -12.280638 kcal Electronic energy + Delta-G solvation = -19981.605992 eV Core-core repulsion = 16918.992741 eV Total energy + Delta-G solvation = -3062.613251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.49716 -38.11717 -37.50709 -35.92150 -32.26289 -31.67768 -31.46497 -28.13811 -26.65690 -25.74573 -25.22400 -22.72146 -21.70335 -21.15342 -19.17122 -17.93450 -17.25922 -16.83928 -15.93299 -15.87813 -14.91531 -14.38938 -14.25325 -14.14171 -13.85269 -13.72274 -13.60869 -12.91652 -12.43360 -12.23243 -12.05869 -11.79785 -11.63571 -11.24618 -11.07148 -10.87729 -10.76834 -10.49290 -10.36884 -10.15107 -9.63935 -9.40736 -9.25020 -9.08205 -8.76858 -8.10248 -7.37209 -6.18611 -4.11100 1.51723 1.58049 3.24673 3.33699 3.38836 3.41968 3.89631 4.03563 4.33633 4.51793 4.92085 5.01899 5.26792 5.35172 5.47157 5.51017 5.52554 5.56634 5.63947 5.70449 5.80655 5.94478 5.98627 6.17116 6.27489 6.37499 6.39208 6.60408 6.69267 6.71983 6.80772 6.96467 7.29291 7.34968 7.51822 7.85123 8.04501 8.28392 8.34024 8.79967 9.43897 10.85599 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018147 B = 0.006300 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.562514 B = 4443.378836 C = 4595.757263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.293 6.293 3 C 0.289 3.711 4 N -0.508 5.508 5 C 0.097 3.903 6 C -0.091 4.091 7 C -0.164 4.164 8 C -0.143 4.143 9 C 0.089 3.911 10 O -0.285 6.285 11 C 0.082 3.918 12 C 0.051 3.949 13 C -0.486 4.486 14 H 0.065 0.935 15 C 0.073 3.927 16 N -0.879 5.879 17 Si 0.888 3.112 18 H -0.280 1.280 19 H -0.284 1.284 20 H -0.269 1.269 21 C -0.192 4.192 22 C -0.199 4.199 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.133 0.867 30 H 0.149 0.851 31 H 0.027 0.973 32 H 0.114 0.886 33 H 0.265 0.735 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.421 7.146 -4.385 12.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.200 6.200 3 C 0.107 3.893 4 N -0.234 5.234 5 C -0.037 4.037 6 C -0.149 4.149 7 C -0.184 4.184 8 C -0.168 4.168 9 C 0.038 3.962 10 O -0.196 6.196 11 C 0.008 3.992 12 C 0.050 3.950 13 C -0.522 4.522 14 H 0.083 0.917 15 C -0.130 4.130 16 N -0.516 5.516 17 Si 0.715 3.285 18 H -0.206 1.206 19 H -0.209 1.209 20 H -0.194 1.194 21 C -0.230 4.230 22 C -0.236 4.236 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.110 0.890 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.151 0.849 30 H 0.167 0.833 31 H 0.045 0.955 32 H 0.132 0.868 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.245 6.780 -4.260 13.003 hybrid contribution 0.793 0.069 0.874 1.182 sum -9.453 6.849 -3.386 12.154 Atomic orbital electron populations 1.22769 0.78354 1.02472 1.01737 1.86410 1.21713 1.23633 1.88199 1.19081 0.86729 0.85105 0.98392 1.67070 1.39547 0.98000 1.18815 1.20598 0.91942 0.91609 0.99582 1.20554 0.98878 0.92913 1.02535 1.21564 0.93533 0.99110 1.04174 1.21645 1.01648 0.90786 1.02752 1.19143 0.89177 0.88100 0.99742 1.86264 1.21278 1.26127 1.85936 1.22899 0.75116 1.00389 1.00756 1.18760 0.95460 0.90456 0.90299 1.20462 1.48189 0.93729 0.89851 0.91676 1.24941 0.93802 0.94813 0.99444 1.69818 1.38001 1.12438 1.31350 0.86632 0.79251 0.78648 0.83920 1.20560 1.20943 1.19404 1.22999 0.92516 1.02995 1.04453 1.22803 0.98883 0.98658 1.03288 0.92802 0.92855 0.88991 0.91017 0.91020 0.91092 0.84895 0.83310 0.95517 0.86847 0.92544 0.91641 0.89803 0.90326 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.38 101.05 1.05 1.64 16 2 O -0.29 -5.67 10.27 -33.40 -0.34 -6.02 16 3 C 0.29 5.71 7.50 -16.99 -0.13 5.58 16 4 N -0.51 -8.87 9.13 -9.43 -0.09 -8.95 16 5 C 0.10 1.48 6.78 -82.59 -0.56 0.92 16 6 C -0.09 -0.97 10.16 36.00 0.37 -0.61 16 7 C -0.16 -2.48 9.73 -39.45 -0.38 -2.86 16 8 C -0.14 -2.60 9.16 -39.18 -0.36 -2.95 16 9 C 0.09 1.87 6.71 -38.96 -0.26 1.61 16 10 O -0.28 -6.84 9.92 -34.13 -0.34 -7.17 16 11 C 0.08 1.97 4.44 37.16 0.16 2.13 16 12 C 0.05 1.28 1.98 -155.67 -0.31 0.97 16 13 C -0.49 -13.38 8.98 -34.44 -0.31 -13.69 16 14 H 0.07 1.80 7.91 -52.49 -0.42 1.38 16 15 C 0.07 1.97 5.03 -17.82 -0.09 1.88 16 16 N -0.88 -23.92 11.14 55.43 0.62 -23.30 16 17 Si 0.89 21.19 29.60 -169.99 -5.03 16.16 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 C -0.19 -4.32 9.88 -26.74 -0.26 -4.59 16 22 C -0.20 -4.46 9.93 -26.74 -0.27 -4.73 16 23 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 24 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 25 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.15 2.65 6.44 -52.49 -0.34 2.31 16 31 H 0.03 0.58 7.76 -51.93 -0.40 0.18 16 32 H 0.11 2.89 4.71 -51.93 -0.24 2.65 16 33 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 34 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 35 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 36 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 37 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 316.44 15.07 4.77 4.77 Total: -1.00 -29.92 316.44 -6.94 -36.85 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.18 Total: 2.36 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -1.35 Total: -14.69 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.53 Total: -32.26 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.68 Total: -13.19 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.92 -6.94 -36.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600678061.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.571 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds