Wall clock time and date at job start Mon Mar 30 2020 07:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35765 * 117.00257 * 2 1 4 4 N 1.32171 * 119.71315 * 0.02562 * 3 2 1 5 5 C 1.31992 * 121.70335 * 180.02562 * 4 3 2 6 6 C 1.50693 * 119.53106 * 179.97438 * 5 4 3 7 7 C 1.38055 * 120.93313 * 359.97438 * 5 4 3 8 8 C 1.38773 * 119.33583 * 0.02562 * 7 5 4 9 9 C 1.38800 * 118.43862 * 359.97438 * 8 7 5 10 10 O 1.36000 * 120.49349 * 179.97438 * 9 8 7 11 11 C 1.42903 * 116.99713 * 354.67674 * 10 9 8 12 12 C 1.53000 * 109.47245 * 179.30494 * 11 10 9 13 13 C 1.50695 * 115.55337 * 279.84691 * 12 11 10 14 14 H 1.07996 * 120.00460 * 144.24346 * 13 12 11 15 15 C 1.37885 * 119.99663 * 324.24032 * 13 12 11 16 16 N 1.31512 * 120.00206 * 338.09320 * 15 13 12 17 17 Si 1.86798 * 119.99770 * 158.09292 * 15 13 12 18 18 H 1.48501 * 109.47274 * 90.00190 * 17 15 13 19 19 H 1.48500 * 109.47369 * 210.00242 * 17 15 13 20 20 H 1.48501 * 109.47418 * 330.00021 * 17 15 13 21 21 C 1.52997 * 117.49777 * 134.13048 * 12 11 10 22 22 C 1.52990 * 60.00061 * 252.51702 * 21 12 11 23 23 H 1.09005 * 109.46869 * 300.00046 * 1 2 3 24 24 H 1.09000 * 109.47316 * 60.00057 * 1 2 3 25 25 H 1.09001 * 109.47087 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47328 * 90.00457 * 6 5 4 27 27 H 1.09002 * 109.47013 * 209.99725 * 6 5 4 28 28 H 1.09002 * 109.47200 * 329.99761 * 6 5 4 29 29 H 1.08001 * 120.32740 * 179.97438 * 7 5 4 30 30 H 1.07997 * 120.78195 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47488 * 299.31039 * 11 10 9 32 32 H 1.09001 * 109.46797 * 59.30812 * 11 10 9 33 33 H 0.96992 * 120.00260 * 185.34856 * 16 15 13 34 34 H 1.09003 * 117.49865 * 0.02562 * 21 12 11 35 35 H 1.09001 * 117.49481 * 145.02266 * 21 12 11 36 36 H 1.09004 * 117.50042 * 252.51130 * 22 21 12 37 37 H 1.09005 * 117.52204 * 107.48970 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 7 1.3201 2.3145 0.0005 5 6 1.8781 3.5107 0.0000 6 6 1.0040 4.7382 0.0001 7 6 3.2513 3.6531 -0.0005 8 6 4.0524 2.5199 -0.0011 9 6 3.4373 1.2756 -0.0005 10 8 4.1820 0.1376 -0.0016 11 6 5.5979 0.2891 -0.1214 12 6 6.2630 -1.0883 -0.0864 13 6 6.4407 -1.6897 1.2839 14 1 6.3369 -2.7556 1.4235 15 6 6.7359 -0.8791 2.3595 16 7 7.2784 0.3027 2.1630 17 14 6.3652 -1.4595 4.0959 18 1 7.5423 -2.1853 4.6372 19 1 6.0679 -0.2867 4.9570 20 1 5.1906 -2.3679 4.0741 21 6 7.3425 -1.3784 -1.1311 22 6 5.9696 -2.0440 -1.2446 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7937 5.0344 1.0277 27 1 1.5180 5.5503 -0.5141 28 1 0.0681 4.5177 -0.5134 29 1 3.6976 4.6366 -0.0013 30 1 5.1291 2.6042 -0.0019 31 1 5.8322 0.7818 -1.0650 32 1 5.9699 0.8933 0.7061 33 1 7.5574 0.8403 2.9205 34 1 7.5791 -0.5877 -1.8431 35 1 8.1816 -2.0041 -0.8273 36 1 5.9055 -3.1077 -1.0155 37 1 5.3025 -1.6916 -2.0313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600678061.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:14 Heat of formation + Delta-G solvation = -30.720716 kcal Electronic energy + Delta-G solvation = -19982.405613 eV Core-core repulsion = 16918.992741 eV Total energy + Delta-G solvation = -3063.412873 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.87175 -39.73303 -38.86338 -37.67795 -34.29316 -32.98901 -32.69725 -29.42330 -28.20659 -27.46886 -26.75340 -24.07828 -23.14107 -22.85847 -21.05717 -19.33284 -18.73073 -18.55083 -17.55099 -17.31297 -16.77126 -16.08734 -15.81210 -15.39750 -15.29134 -14.98899 -14.93339 -14.59890 -13.83364 -13.50999 -13.35766 -13.25229 -12.94327 -12.87924 -12.78703 -12.53492 -12.36091 -12.14859 -12.00651 -11.88299 -11.40939 -11.12784 -10.82394 -10.66594 -10.52427 -10.03607 -8.81197 -8.21480 -6.19514 0.17561 0.21454 1.33892 1.39491 1.50123 2.08805 2.34288 2.36859 2.70225 2.92354 3.31628 3.63507 3.80086 3.98549 4.04432 4.22065 4.34631 4.37608 4.43645 4.45532 4.53169 4.70594 4.72867 4.80886 4.86641 4.89317 4.92182 5.00346 5.13061 5.15860 5.17160 5.43369 5.50210 5.54823 5.81498 6.15198 6.33155 6.58477 6.72782 6.86339 7.36223 8.81636 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018147 B = 0.006300 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.562514 B = 4443.378836 C = 4595.757263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.323 6.323 3 C 0.273 3.727 4 N -0.511 5.511 5 C 0.104 3.896 6 C -0.089 4.089 7 C -0.158 4.158 8 C -0.142 4.142 9 C 0.041 3.959 10 O -0.314 6.314 11 C 0.097 3.903 12 C 0.012 3.988 13 C -0.512 4.512 14 H 0.052 0.948 15 C 0.035 3.965 16 N -0.894 5.894 17 Si 0.940 3.060 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.277 1.277 21 C -0.179 4.179 22 C -0.186 4.186 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.116 0.884 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.174 0.826 30 H 0.146 0.854 31 H 0.038 0.962 32 H 0.093 0.907 33 H 0.267 0.733 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.466 9.035 -4.557 14.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.231 6.231 3 C 0.093 3.907 4 N -0.238 5.238 5 C -0.032 4.032 6 C -0.146 4.146 7 C -0.178 4.178 8 C -0.168 4.168 9 C -0.008 4.008 10 O -0.227 6.227 11 C 0.023 3.977 12 C 0.011 3.989 13 C -0.549 4.549 14 H 0.070 0.930 15 C -0.166 4.166 16 N -0.532 5.532 17 Si 0.765 3.235 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.202 1.202 21 C -0.217 4.217 22 C -0.223 4.223 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.134 0.866 26 H 0.106 0.894 27 H 0.120 0.880 28 H 0.095 0.905 29 H 0.192 0.808 30 H 0.164 0.836 31 H 0.056 0.944 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.300 8.665 -4.438 14.915 hybrid contribution 1.006 -0.400 0.896 1.406 sum -10.293 8.264 -3.542 13.667 Atomic orbital electron populations 1.23035 0.75987 1.04333 1.02254 1.86357 1.24273 1.24125 1.88304 1.19237 0.86614 0.85896 0.98986 1.67220 1.39270 0.98221 1.19051 1.21542 0.92924 0.92315 0.96435 1.20721 0.98536 0.91284 1.04043 1.22008 0.93448 0.99801 1.02531 1.21816 1.01929 0.90999 1.02089 1.19515 0.89758 0.88279 1.03262 1.86185 1.21021 1.28100 1.87397 1.22564 0.75613 0.99245 1.00317 1.18949 0.97756 0.91977 0.90192 1.20672 1.49004 0.93395 0.91793 0.93024 1.25513 0.93653 0.95165 1.02241 1.69889 1.38221 1.12935 1.32109 0.85832 0.78969 0.78214 0.80475 1.19348 1.20486 1.20214 1.22977 0.92148 1.03121 1.03445 1.22788 0.99002 0.98281 1.02211 0.92497 0.91976 0.86567 0.89444 0.88011 0.90521 0.80839 0.83610 0.94402 0.88936 0.92329 0.89711 0.90175 0.90252 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.05 10.38 113.37 1.18 2.23 16 2 O -0.32 -12.74 10.27 -77.15 -0.79 -13.53 16 3 C 0.27 10.88 7.50 84.91 0.64 11.51 16 4 N -0.51 -17.18 9.13 -296.61 -2.71 -19.89 16 5 C 0.10 2.86 6.78 42.49 0.29 3.15 16 6 C -0.09 -1.51 10.16 71.23 0.72 -0.78 16 7 C -0.16 -4.39 9.73 22.35 0.22 -4.17 16 8 C -0.14 -5.14 9.16 22.53 0.21 -4.93 16 9 C 0.04 1.75 6.71 22.67 0.15 1.90 16 10 O -0.31 -15.61 9.92 -79.78 -0.79 -16.40 16 11 C 0.10 4.74 4.44 71.98 0.32 5.06 16 12 C 0.01 0.60 1.98 -52.93 -0.10 0.50 16 13 C -0.51 -28.91 8.98 25.60 0.23 -28.68 16 14 H 0.05 2.94 7.91 -2.91 -0.02 2.92 16 15 C 0.04 1.95 5.03 84.66 0.43 2.38 16 16 N -0.89 -49.32 11.14 21.45 0.24 -49.08 16 17 Si 0.94 44.04 29.60 68.60 2.03 46.07 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 21 C -0.18 -8.04 9.88 30.59 0.30 -7.73 16 22 C -0.19 -8.33 9.93 30.59 0.30 -8.03 16 23 H 0.06 1.49 8.11 -2.38 -0.02 1.47 16 24 H 0.06 1.55 8.11 -2.39 -0.02 1.53 16 25 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.10 1.17 8.07 -2.39 -0.02 1.15 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 29 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 30 H 0.15 5.22 6.44 -2.91 -0.02 5.21 16 31 H 0.04 1.68 7.76 -2.39 -0.02 1.67 16 32 H 0.09 4.86 4.71 -2.39 -0.01 4.85 16 33 H 0.27 13.92 8.32 -92.71 -0.77 13.15 16 34 H 0.08 3.43 8.08 -2.39 -0.02 3.41 16 35 H 0.08 3.61 8.14 -2.39 -0.02 3.59 16 36 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.08 3.48 8.14 -2.38 -0.02 3.46 16 Total: -1.00 -66.00 316.44 3.92 -62.08 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 1.06 Total: 18.34 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 4.88 Total: -27.59 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -2.47 Total: -68.97 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -1.58 Total: -29.93 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -66.00 3.92 -62.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600678061.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.357 kcal (2) G-P(sol) polarization free energy of solvation -65.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds