Wall clock time and date at job start Mon Mar 30 2020 07:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38277 * 119.91476 * 2 1 4 4 C 1.38237 * 120.18134 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.99854 * 179.97438 * 4 3 2 6 6 C 1.38563 * 120.01077 * 359.71019 * 4 3 2 7 7 O 1.35974 * 120.08025 * 180.30034 * 6 4 3 8 8 C 1.39292 * 119.83202 * 0.54543 * 6 4 3 9 9 N 1.40124 * 120.08672 * 179.75239 * 8 6 4 10 10 C 1.34779 * 120.00062 * 204.52607 * 9 8 6 11 11 O 1.21289 * 120.00075 * 5.53430 * 10 9 8 12 12 C 1.50697 * 119.99975 * 185.53644 * 10 9 8 13 13 H 1.09004 * 109.47513 * 59.99975 * 12 10 9 14 14 C 1.53002 * 109.47245 * 299.99991 * 12 10 9 15 15 C 1.50698 * 109.47216 * 180.02562 * 12 10 9 16 16 H 1.07999 * 119.99908 * 34.97910 * 15 12 10 17 17 C 1.37877 * 120.00059 * 214.98447 * 15 12 10 18 18 N 1.31510 * 120.00267 * 184.93870 * 17 15 12 19 19 Si 1.86807 * 120.00115 * 4.94071 * 17 15 12 20 20 H 1.48500 * 109.47032 * 94.93038 * 19 17 15 21 21 H 1.48494 * 109.47044 * 214.93518 * 19 17 15 22 22 H 1.48505 * 109.46880 * 334.93403 * 19 17 15 23 23 C 1.38192 * 119.91924 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47281 * 269.96863 * 1 2 3 25 25 H 1.08996 * 109.47611 * 29.98002 * 1 2 3 26 26 H 1.09007 * 109.47051 * 149.97157 * 1 2 3 27 27 H 1.08007 * 119.91007 * 0.02580 * 3 2 1 28 28 H 1.08999 * 109.47476 * 90.00161 * 5 4 3 29 29 H 1.09000 * 109.47270 * 210.00840 * 5 4 3 30 30 H 1.09008 * 109.47068 * 330.00048 * 5 4 3 31 31 H 0.96698 * 113.99739 * 270.24367 * 7 6 4 32 32 H 0.97001 * 120.00003 * 24.52348 * 9 8 6 33 33 H 1.09000 * 109.47088 * 55.01517 * 14 12 10 34 34 H 1.09002 * 109.47477 * 175.01215 * 14 12 10 35 35 H 1.08999 * 109.47102 * 295.01501 * 14 12 10 36 36 H 0.97000 * 120.00495 * 180.02562 * 18 17 15 37 37 H 1.08003 * 120.00844 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1985 0.0000 4 6 3.5790 1.2050 -0.0005 5 6 4.3264 2.5136 -0.0011 6 6 4.2776 0.0084 0.0050 7 8 5.6373 0.0131 0.0106 8 6 3.5835 -1.1993 -0.0004 9 7 4.2846 -2.4125 -0.0001 10 6 3.7044 -3.5263 -0.4894 11 8 2.6162 -3.4598 -1.0209 12 6 4.4077 -4.8542 -0.3760 13 1 4.5786 -5.0864 0.6752 14 6 5.7497 -4.7847 -1.1075 15 6 3.5534 -5.9297 -0.9960 16 1 2.9510 -5.7072 -1.8644 17 6 3.5406 -7.1977 -0.4547 18 7 2.8724 -8.1606 -1.0510 19 14 4.4726 -7.5479 1.1260 20 1 3.5487 -7.4273 2.2824 21 1 5.0289 -8.9238 1.0781 22 1 5.5809 -6.5706 1.2740 23 6 2.1963 -1.1977 -0.0005 24 1 -0.3634 -0.0006 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5143 27 1 1.6537 2.1323 0.0004 28 1 4.5070 2.8293 1.0264 29 1 5.2791 2.3876 -0.5154 30 1 3.7335 3.2704 -0.5149 31 1 6.0342 0.0162 -0.8711 32 1 5.1876 -2.4507 0.3522 33 1 6.3327 -3.9498 -0.7186 34 1 6.2974 -5.7141 -0.9512 35 1 5.5753 -4.6407 -2.1738 36 1 2.8631 -9.0526 -0.6700 37 1 1.6551 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601845328.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:28 Heat of formation + Delta-G solvation = -66.393418 kcal Electronic energy + Delta-G solvation = -19778.322985 eV Core-core repulsion = 16713.363228 eV Total energy + Delta-G solvation = -3064.959757 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.46904 -38.68504 -36.79899 -34.46593 -33.81291 -32.72355 -31.49254 -29.76796 -27.07903 -26.11520 -25.33375 -23.56129 -21.28462 -20.93461 -19.24687 -18.30257 -17.18802 -16.93753 -15.90181 -15.66006 -15.16386 -14.42085 -14.32130 -13.88293 -13.56710 -13.34738 -13.26526 -13.10695 -12.65416 -12.53727 -12.36398 -12.32479 -11.74450 -11.62165 -11.40748 -11.25633 -11.15919 -10.85613 -10.64623 -10.35540 -9.89679 -9.83670 -9.23775 -8.75842 -8.61452 -8.25758 -7.67658 -6.12964 -4.13376 1.33369 1.49804 3.19156 3.26780 3.29679 3.35213 3.56251 3.83812 4.31637 4.32742 4.81759 4.92092 5.14072 5.28399 5.35849 5.42542 5.54461 5.65474 5.70841 5.73862 5.77680 5.87097 6.06985 6.11981 6.17779 6.30077 6.35872 6.44358 6.52961 6.70582 6.76203 6.84706 7.09709 7.15953 7.46535 7.71103 7.95400 8.44966 8.90174 9.01830 9.45800 10.99931 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026980 B = 0.005379 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.539420 B = 5204.489474 C = 5856.985339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.068 4.068 3 C -0.141 4.141 4 C -0.089 4.089 5 C -0.103 4.103 6 C 0.049 3.951 7 O -0.492 6.492 8 C 0.154 3.846 9 N -0.682 5.682 10 C 0.517 3.483 11 O -0.505 6.505 12 C -0.006 4.006 13 H 0.062 0.938 14 C -0.135 4.135 15 C -0.498 4.498 16 H 0.087 0.913 17 C 0.074 3.926 18 N -0.892 5.892 19 Si 0.869 3.131 20 H -0.276 1.276 21 H -0.284 1.284 22 H -0.262 1.262 23 C -0.131 4.131 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.121 0.879 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.381 0.619 32 H 0.410 0.590 33 H 0.026 0.974 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.265 0.735 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.435 18.544 3.330 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.069 4.069 3 C -0.160 4.160 4 C -0.090 4.090 5 C -0.160 4.160 6 C 0.001 3.999 7 O -0.301 6.301 8 C 0.056 3.944 9 N -0.327 5.327 10 C 0.307 3.693 11 O -0.378 6.378 12 C -0.027 4.027 13 H 0.080 0.920 14 C -0.193 4.193 15 C -0.536 4.536 16 H 0.105 0.895 17 C -0.128 4.128 18 N -0.529 5.529 19 Si 0.696 3.304 20 H -0.202 1.202 21 H -0.210 1.210 22 H -0.186 1.186 23 C -0.152 4.152 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.139 0.861 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.235 0.765 32 H 0.246 0.754 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.535 18.244 3.551 18.759 hybrid contribution 1.055 -0.381 0.530 1.241 sum 3.590 17.863 4.081 18.672 Atomic orbital electron populations 1.20775 0.91028 1.02889 1.02231 1.19818 0.96194 0.92450 0.98399 1.20668 0.92717 0.97509 1.05112 1.19876 0.93859 0.94322 1.00912 1.20598 0.99705 0.93410 1.02248 1.17872 0.82709 0.90554 1.08730 1.84840 1.15823 1.96270 1.33147 1.18296 0.91960 0.85523 0.98574 1.44153 1.19049 1.06917 1.62610 1.22164 0.86381 0.85382 0.75411 1.90545 1.21020 1.85705 1.40513 1.19464 0.94544 0.89996 0.98745 0.92006 1.21977 0.96572 0.99847 1.00922 1.20710 1.25836 0.92019 1.15045 0.89515 1.25016 0.94962 0.96005 0.96866 1.69880 1.41801 1.01927 1.39280 0.86971 0.80812 0.78021 0.84611 1.20169 1.20979 1.18625 1.21359 0.92195 0.99655 1.01951 0.91236 0.91718 0.91063 0.86117 0.91275 0.91643 0.91809 0.76456 0.75416 0.95472 0.92441 0.92792 0.92451 0.82965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 36.01 0.36 -0.96 16 2 C -0.07 -0.98 5.88 -104.62 -0.62 -1.60 16 3 C -0.14 -1.80 9.34 -39.57 -0.37 -2.17 16 4 C -0.09 -1.14 5.89 -104.50 -0.62 -1.76 16 5 C -0.10 -0.99 9.78 36.00 0.35 -0.64 16 6 C 0.05 0.70 6.69 -39.07 -0.26 0.44 16 7 O -0.49 -6.04 11.96 -19.66 -0.24 -6.28 16 8 C 0.15 2.63 6.45 -83.50 -0.54 2.09 16 9 N -0.68 -12.03 5.20 -9.75 -0.05 -12.08 16 10 C 0.52 11.27 6.96 -10.99 -0.08 11.19 16 11 O -0.51 -12.67 12.93 5.55 0.07 -12.59 16 12 C -0.01 -0.13 2.29 -92.93 -0.21 -0.34 16 13 H 0.06 1.38 5.06 -51.93 -0.26 1.11 16 14 C -0.14 -2.62 9.12 37.16 0.34 -2.28 16 15 C -0.50 -13.97 8.36 -34.44 -0.29 -14.26 16 16 H 0.09 2.76 7.61 -52.49 -0.40 2.36 16 17 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 18 N -0.89 -27.00 13.96 55.43 0.77 -26.23 16 19 Si 0.87 20.51 27.32 -169.99 -4.64 15.87 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.26 -5.66 6.36 56.52 0.36 -5.30 16 23 C -0.13 -2.31 8.37 -39.42 -0.33 -2.64 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 26 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 27 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.58 7.54 -51.93 -0.39 0.19 16 30 H 0.06 0.51 8.09 -51.92 -0.42 0.09 16 31 H 0.38 3.24 9.06 45.56 0.41 3.65 16 32 H 0.41 6.21 7.54 -40.82 -0.31 5.91 16 33 H 0.03 0.42 7.31 -51.93 -0.38 0.04 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 37 H 0.15 3.07 5.79 -52.48 -0.30 2.77 16 LS Contribution 309.64 15.07 4.67 4.67 Total: -1.00 -32.72 309.64 -5.95 -38.67 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -4.18 Total: 8.92 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -2.35 Total: -10.94 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.72 Total: -38.31 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.16 Total: -18.87 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.64 Total: 15.87 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.72 -5.95 -38.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601845328.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.725 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds