Wall clock time and date at job start Mon Mar 30 2020 07:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38277 * 119.91476 * 2 1 4 4 C 1.38237 * 120.18134 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.99854 * 179.97438 * 4 3 2 6 6 C 1.38563 * 120.01077 * 359.71019 * 4 3 2 7 7 O 1.35974 * 120.08025 * 180.30034 * 6 4 3 8 8 C 1.39292 * 119.83202 * 0.54543 * 6 4 3 9 9 N 1.40124 * 120.08672 * 179.75239 * 8 6 4 10 10 C 1.34779 * 120.00062 * 204.52607 * 9 8 6 11 11 O 1.21289 * 120.00075 * 5.53430 * 10 9 8 12 12 C 1.50697 * 119.99975 * 185.53644 * 10 9 8 13 13 H 1.09004 * 109.47513 * 59.99975 * 12 10 9 14 14 C 1.53002 * 109.47245 * 299.99991 * 12 10 9 15 15 C 1.50698 * 109.47216 * 180.02562 * 12 10 9 16 16 H 1.07999 * 119.99908 * 34.97910 * 15 12 10 17 17 C 1.37877 * 120.00059 * 214.98447 * 15 12 10 18 18 N 1.31510 * 120.00267 * 184.93870 * 17 15 12 19 19 Si 1.86807 * 120.00115 * 4.94071 * 17 15 12 20 20 H 1.48500 * 109.47032 * 94.93038 * 19 17 15 21 21 H 1.48494 * 109.47044 * 214.93518 * 19 17 15 22 22 H 1.48505 * 109.46880 * 334.93403 * 19 17 15 23 23 C 1.38192 * 119.91924 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47281 * 269.96863 * 1 2 3 25 25 H 1.08996 * 109.47611 * 29.98002 * 1 2 3 26 26 H 1.09007 * 109.47051 * 149.97157 * 1 2 3 27 27 H 1.08007 * 119.91007 * 0.02580 * 3 2 1 28 28 H 1.08999 * 109.47476 * 90.00161 * 5 4 3 29 29 H 1.09000 * 109.47270 * 210.00840 * 5 4 3 30 30 H 1.09008 * 109.47068 * 330.00048 * 5 4 3 31 31 H 0.96698 * 113.99739 * 270.24367 * 7 6 4 32 32 H 0.97001 * 120.00003 * 24.52348 * 9 8 6 33 33 H 1.09000 * 109.47088 * 55.01517 * 14 12 10 34 34 H 1.09002 * 109.47477 * 175.01215 * 14 12 10 35 35 H 1.08999 * 109.47102 * 295.01501 * 14 12 10 36 36 H 0.97000 * 120.00495 * 180.02562 * 18 17 15 37 37 H 1.08003 * 120.00844 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1985 0.0000 4 6 3.5790 1.2050 -0.0005 5 6 4.3264 2.5136 -0.0011 6 6 4.2776 0.0084 0.0050 7 8 5.6373 0.0131 0.0106 8 6 3.5835 -1.1993 -0.0004 9 7 4.2846 -2.4125 -0.0001 10 6 3.7044 -3.5263 -0.4894 11 8 2.6162 -3.4598 -1.0209 12 6 4.4077 -4.8542 -0.3760 13 1 4.5786 -5.0864 0.6752 14 6 5.7497 -4.7847 -1.1075 15 6 3.5534 -5.9297 -0.9960 16 1 2.9510 -5.7072 -1.8644 17 6 3.5406 -7.1977 -0.4547 18 7 2.8724 -8.1606 -1.0510 19 14 4.4726 -7.5479 1.1260 20 1 3.5487 -7.4273 2.2824 21 1 5.0289 -8.9238 1.0781 22 1 5.5809 -6.5706 1.2740 23 6 2.1963 -1.1977 -0.0005 24 1 -0.3634 -0.0006 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5143 27 1 1.6537 2.1323 0.0004 28 1 4.5070 2.8293 1.0264 29 1 5.2791 2.3876 -0.5154 30 1 3.7335 3.2704 -0.5149 31 1 6.0342 0.0162 -0.8711 32 1 5.1876 -2.4507 0.3522 33 1 6.3327 -3.9498 -0.7186 34 1 6.2974 -5.7141 -0.9512 35 1 5.5753 -4.6407 -2.1738 36 1 2.8631 -9.0526 -0.6700 37 1 1.6551 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601845328.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:27 Heat of formation + Delta-G solvation = -90.567194 kcal Electronic energy + Delta-G solvation = -19779.371239 eV Core-core repulsion = 16713.363228 eV Total energy + Delta-G solvation = -3066.008011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.78834 -40.12158 -37.82555 -35.94216 -35.73649 -33.76263 -33.39064 -31.03671 -28.00681 -27.29972 -27.16872 -25.14476 -22.74120 -22.05463 -20.76832 -19.43544 -19.20362 -18.29312 -17.40626 -16.80992 -16.53456 -16.16355 -15.98675 -15.14832 -14.89272 -14.55304 -14.50783 -14.42562 -14.01609 -13.88394 -13.65383 -13.14681 -13.11693 -13.00137 -12.73434 -12.68802 -12.66954 -12.26456 -12.16945 -11.78099 -11.69903 -11.32073 -11.14520 -10.77627 -10.38429 -9.37990 -8.93187 -8.30484 -6.37786 0.21207 0.33193 1.33674 1.36730 1.46949 1.75184 2.11946 2.32513 2.66620 3.05797 3.28476 3.81625 3.89847 4.06307 4.34673 4.35585 4.38237 4.45764 4.66400 4.67457 4.75200 4.78746 4.82583 4.89536 4.94003 5.07279 5.09558 5.21287 5.30957 5.42141 5.46055 5.53324 5.59466 5.68449 5.99558 6.20343 6.53686 6.75010 6.79391 7.22025 7.32600 8.87222 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026980 B = 0.005379 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.539420 B = 5204.489474 C = 5856.985339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.076 4.076 3 C -0.131 4.131 4 C -0.088 4.088 5 C -0.101 4.101 6 C 0.057 3.943 7 O -0.491 6.491 8 C 0.120 3.880 9 N -0.663 5.663 10 C 0.517 3.483 11 O -0.553 6.553 12 C -0.009 4.009 13 H 0.077 0.923 14 C -0.129 4.129 15 C -0.508 4.508 16 H 0.025 0.975 17 C 0.010 3.990 18 N -0.949 5.949 19 Si 0.943 3.057 20 H -0.275 1.275 21 H -0.280 1.280 22 H -0.220 1.220 23 C -0.162 4.162 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.051 0.949 27 H 0.156 0.844 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.400 0.600 32 H 0.423 0.577 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.268 0.732 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.882 21.900 5.194 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.077 4.077 3 C -0.149 4.149 4 C -0.089 4.089 5 C -0.157 4.157 6 C 0.010 3.990 7 O -0.302 6.302 8 C 0.024 3.976 9 N -0.309 5.309 10 C 0.307 3.693 11 O -0.429 6.429 12 C -0.030 4.030 13 H 0.094 0.906 14 C -0.186 4.186 15 C -0.546 4.546 16 H 0.043 0.957 17 C -0.187 4.187 18 N -0.588 5.588 19 Si 0.764 3.236 20 H -0.200 1.200 21 H -0.205 1.205 22 H -0.143 1.143 23 C -0.182 4.182 24 H 0.100 0.900 25 H 0.110 0.890 26 H 0.070 0.930 27 H 0.174 0.826 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.258 0.742 32 H 0.262 0.738 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.035 21.666 5.415 22.893 hybrid contribution 0.227 -1.267 -0.132 1.294 sum 5.262 20.399 5.283 21.719 Atomic orbital electron populations 1.20819 0.89535 1.03270 1.03168 1.20101 0.97496 0.92105 0.98015 1.21080 0.93033 0.97943 1.02860 1.20339 0.94175 0.95243 0.99109 1.20686 1.00030 0.91755 1.03248 1.17902 0.83596 0.89929 1.07586 1.84788 1.14490 1.96114 1.34836 1.18511 0.92000 0.85932 1.01137 1.43668 1.19309 1.06296 1.61639 1.21869 0.85697 0.86331 0.75403 1.90548 1.22966 1.86483 1.42909 1.19441 0.95288 0.88953 0.99353 0.90560 1.21856 0.94831 1.02087 0.99873 1.20824 1.25951 0.94174 1.13660 0.95686 1.26031 0.96200 0.95378 1.01106 1.70063 1.44336 1.02649 1.41749 0.85807 0.80306 0.78870 0.78575 1.20042 1.20538 1.14274 1.21223 0.92930 0.99482 1.04585 0.89967 0.88960 0.93025 0.82594 0.90358 0.90723 0.89728 0.74193 0.73828 0.90718 0.92008 0.94122 0.92298 0.86849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.55 10.01 71.24 0.71 -1.83 16 2 C -0.08 -2.16 5.88 -19.87 -0.12 -2.28 16 3 C -0.13 -2.92 9.34 22.28 0.21 -2.71 16 4 C -0.09 -1.95 5.89 -19.79 -0.12 -2.07 16 5 C -0.10 -1.45 9.78 71.24 0.70 -0.76 16 6 C 0.06 1.51 6.69 22.60 0.15 1.67 16 7 O -0.49 -10.31 11.96 -93.26 -1.12 -11.42 16 8 C 0.12 4.06 6.45 38.18 0.25 4.30 16 9 N -0.66 -23.03 5.20 -303.14 -1.58 -24.61 16 10 C 0.52 23.20 6.96 87.66 0.61 23.81 16 11 O -0.55 -29.78 12.93 -3.06 -0.04 -29.82 16 12 C -0.01 -0.40 2.29 -12.29 -0.03 -0.42 16 13 H 0.08 3.25 5.06 -2.39 -0.01 3.23 16 14 C -0.13 -4.76 9.12 71.98 0.66 -4.10 16 15 C -0.51 -29.97 8.36 25.60 0.21 -29.76 16 16 H 0.02 1.73 7.61 -2.91 -0.02 1.71 16 17 C 0.01 0.58 5.47 84.66 0.46 1.04 16 18 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 19 Si 0.94 42.19 27.32 68.60 1.87 44.06 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.22 -8.34 6.36 99.48 0.63 -7.71 16 23 C -0.16 -5.89 8.37 22.37 0.19 -5.70 16 24 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.09 1.57 8.08 -2.39 -0.02 1.55 16 26 H 0.05 1.36 8.08 -2.38 -0.02 1.35 16 27 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 28 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 0.97 7.54 -2.39 -0.02 0.95 16 30 H 0.08 0.91 8.09 -2.38 -0.02 0.89 16 31 H 0.40 5.28 9.06 -74.06 -0.67 4.61 16 32 H 0.42 11.84 7.54 -92.71 -0.70 11.14 16 33 H 0.07 2.05 7.31 -2.39 -0.02 2.03 16 34 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 37 H 0.11 5.00 5.79 -2.91 -0.02 4.99 16 Total: -1.00 -78.20 309.64 2.99 -75.21 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.34 Total: 25.47 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 3.88 Total: -18.82 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -1.28 Total: -84.68 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -1.16 Total: -41.24 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.87 Total: 44.06 kcal Total: -78.20 2.99 -75.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601845328.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.354 kcal (2) G-P(sol) polarization free energy of solvation -78.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds