Wall clock time and date at job start Mon Mar 30 2020 07:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38278 * 119.91882 * 2 1 4 4 C 1.38242 * 120.18239 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.99357 * 179.97438 * 4 3 2 6 6 C 1.38552 * 120.01198 * 0.02562 * 4 3 2 7 7 O 1.35972 * 120.08309 * 179.97438 * 6 4 3 8 8 C 1.39297 * 119.83644 * 359.97438 * 6 4 3 9 9 N 1.40119 * 120.08874 * 180.02562 * 8 6 4 10 10 C 1.34778 * 119.99826 * 214.91003 * 9 8 6 11 11 O 1.21294 * 120.00373 * 355.54953 * 10 9 8 12 12 C 1.50704 * 120.00066 * 175.55308 * 10 9 8 13 13 H 1.09002 * 109.47174 * 299.99770 * 12 10 9 14 14 C 1.52995 * 109.47027 * 59.99828 * 12 10 9 15 15 C 1.50693 * 109.47147 * 180.02562 * 12 10 9 16 16 H 1.07998 * 120.00071 * 359.97438 * 15 12 10 17 17 C 1.37887 * 120.00038 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99616 * 359.97438 * 17 15 12 19 19 Si 1.86793 * 120.00063 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.47373 * 89.99920 * 19 17 15 21 21 H 1.48502 * 109.47234 * 209.99755 * 19 17 15 22 22 H 1.48503 * 109.47196 * 329.99889 * 19 17 15 23 23 C 1.38194 * 119.91814 * 180.23563 * 2 1 3 24 24 H 1.08999 * 109.47142 * 89.99880 * 1 2 3 25 25 H 1.09000 * 109.47237 * 209.99695 * 1 2 3 26 26 H 1.09007 * 109.47151 * 329.99838 * 1 2 3 27 27 H 1.08002 * 119.90858 * 359.97438 * 3 2 1 28 28 H 1.09007 * 109.47258 * 270.02028 * 5 4 3 29 29 H 1.08998 * 109.47263 * 30.02095 * 5 4 3 30 30 H 1.08997 * 109.47043 * 150.02762 * 5 4 3 31 31 H 0.96710 * 114.00050 * 269.97951 * 7 6 4 32 32 H 0.97000 * 120.00248 * 34.91083 * 9 8 6 33 33 H 1.09007 * 109.47347 * 180.02562 * 14 12 10 34 34 H 1.09000 * 109.47492 * 300.00015 * 14 12 10 35 35 H 1.08997 * 109.47267 * 60.00437 * 14 12 10 36 36 H 0.97005 * 119.99497 * 179.97438 * 18 17 15 37 37 H 1.08004 * 120.00956 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1985 0.0000 4 6 3.5791 1.2049 0.0005 5 6 4.3264 2.5135 -0.0001 6 6 4.2776 0.0083 0.0005 7 8 5.6373 0.0129 0.0005 8 6 3.5835 -1.1994 0.0005 9 7 4.2845 -2.4126 0.0011 10 6 3.7932 -3.4751 -0.6669 11 8 2.7063 -3.4062 -1.2007 12 6 4.5943 -4.7489 -0.7504 13 1 5.5470 -4.5475 -1.2403 14 6 4.8492 -5.2844 0.6599 15 6 3.8275 -5.7732 -1.5464 16 1 2.8569 -5.5268 -1.9509 17 6 4.3645 -7.0256 -1.7573 18 7 5.5462 -7.3258 -1.2642 19 14 3.4137 -8.2956 -2.7433 20 1 3.7686 -8.1739 -4.1801 21 1 3.7599 -9.6569 -2.2615 22 1 1.9566 -8.0656 -2.5722 23 6 2.1962 -1.1978 -0.0049 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.6538 2.1322 -0.0004 28 1 4.5067 2.8285 -1.0279 29 1 3.7337 3.2706 0.5134 30 1 5.2794 2.3878 0.5138 31 1 6.0307 0.0139 -0.8830 32 1 5.1235 -2.4878 0.4822 33 1 5.4290 -6.2055 0.5995 34 1 5.4040 -4.5433 1.2353 35 1 3.8966 -5.4859 1.1497 36 1 5.9238 -8.2070 -1.4123 37 1 1.6550 -2.1324 -0.0092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601845330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:30 Heat of formation + Delta-G solvation = -70.623834 kcal Electronic energy + Delta-G solvation = -19712.055766 eV Core-core repulsion = 16646.912564 eV Total energy + Delta-G solvation = -3065.143202 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.37796 -38.57674 -36.75159 -34.40602 -33.84018 -32.71064 -30.93765 -29.47798 -27.05193 -26.08439 -25.19583 -23.44624 -21.38526 -20.87836 -19.24376 -18.20559 -16.97599 -16.31196 -15.84205 -15.58844 -15.27257 -14.51961 -14.08568 -13.86185 -13.58926 -13.33489 -13.12930 -13.02136 -12.67345 -12.50467 -12.32725 -11.77444 -11.59228 -11.40577 -11.28246 -11.04521 -10.81231 -10.75231 -10.57624 -10.33042 -10.01822 -9.72566 -9.04855 -8.71113 -8.40933 -8.22728 -7.70026 -6.08219 -4.12115 1.35334 1.51336 3.31031 3.36966 3.42733 3.43566 3.69230 3.84622 4.37927 4.43226 4.83972 4.95802 5.25165 5.29974 5.37317 5.42555 5.54844 5.69595 5.70472 5.80617 5.86208 5.92913 6.12766 6.27377 6.40608 6.52814 6.58386 6.72859 6.75486 6.83891 6.87861 7.20292 7.39668 7.69113 7.76707 7.90301 8.04162 8.30315 8.95911 9.02185 9.53632 10.99343 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028484 B = 0.004955 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.761881 B = 5649.141629 C = 6315.736178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.074 4.074 3 C -0.137 4.137 4 C -0.092 4.092 5 C -0.107 4.107 6 C 0.057 3.943 7 O -0.492 6.492 8 C 0.149 3.851 9 N -0.683 5.683 10 C 0.518 3.482 11 O -0.524 6.524 12 C 0.032 3.968 13 H 0.056 0.944 14 C -0.135 4.135 15 C -0.504 4.504 16 H 0.075 0.925 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.901 3.099 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.272 1.272 23 C -0.120 4.120 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.121 0.879 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.384 0.616 32 H 0.411 0.589 33 H 0.096 0.904 34 H 0.013 0.987 35 H 0.033 0.967 36 H 0.262 0.738 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.288 16.231 3.584 16.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.074 4.074 3 C -0.156 4.156 4 C -0.093 4.093 5 C -0.164 4.164 6 C 0.010 3.990 7 O -0.301 6.301 8 C 0.053 3.947 9 N -0.329 5.329 10 C 0.309 3.691 11 O -0.399 6.399 12 C 0.011 3.989 13 H 0.073 0.927 14 C -0.193 4.193 15 C -0.542 4.542 16 H 0.093 0.907 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.729 3.271 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.140 4.140 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.139 0.861 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.239 0.761 32 H 0.247 0.753 33 H 0.114 0.886 34 H 0.032 0.968 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.980 16.016 3.786 16.725 hybrid contribution 0.183 -0.773 -0.815 1.138 sum -2.797 15.243 2.971 15.780 Atomic orbital electron populations 1.20751 0.91092 1.02501 1.02370 1.19802 0.96130 0.92518 0.98979 1.20674 0.92748 0.97464 1.04680 1.19892 0.93844 0.94388 1.01197 1.20637 1.00345 0.93387 1.02041 1.17970 0.82877 0.90629 1.07543 1.84783 1.15787 1.96272 1.33296 1.18271 0.91761 0.85682 0.99010 1.44065 1.26364 1.09335 1.53123 1.22336 0.87069 0.84842 0.74812 1.90526 1.21571 1.82622 1.45133 1.18904 0.95976 0.87752 0.96263 0.92658 1.21772 1.00196 1.02479 0.94825 1.21111 1.04727 0.96113 1.32260 0.90703 1.24951 0.95051 0.98316 0.95846 1.69870 1.16496 1.21686 1.45387 0.86426 0.80407 0.80168 0.80072 1.20633 1.21237 1.19717 1.21211 0.92297 0.99121 1.01384 0.91138 0.91423 0.91775 0.86116 0.91555 0.91706 0.90998 0.76130 0.75252 0.88563 0.96802 0.94811 0.92859 0.83738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.01 36.00 0.36 -0.91 16 2 C -0.07 -1.06 5.88 -104.63 -0.62 -1.68 16 3 C -0.14 -1.77 9.34 -39.56 -0.37 -2.14 16 4 C -0.09 -1.22 5.89 -104.51 -0.62 -1.83 16 5 C -0.11 -1.07 9.79 36.00 0.35 -0.72 16 6 C 0.06 0.86 6.69 -39.07 -0.26 0.60 16 7 O -0.49 -6.47 12.11 -19.65 -0.24 -6.71 16 8 C 0.15 2.62 6.32 -83.49 -0.53 2.09 16 9 N -0.68 -12.66 5.11 -9.75 -0.05 -12.71 16 10 C 0.52 11.73 7.00 -10.98 -0.08 11.65 16 11 O -0.52 -13.24 12.88 5.55 0.07 -13.17 16 12 C 0.03 0.79 2.64 -92.93 -0.25 0.54 16 13 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 14 C -0.13 -3.07 8.86 37.15 0.33 -2.74 16 15 C -0.50 -14.06 8.38 -34.44 -0.29 -14.35 16 16 H 0.07 2.20 6.75 -52.49 -0.35 1.84 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 18 N -0.90 -24.82 11.32 55.43 0.63 -24.19 16 19 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 23 C -0.12 -2.11 8.35 -39.42 -0.33 -2.44 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 26 H 0.06 0.59 8.08 -51.92 -0.42 0.17 16 27 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 31 H 0.38 3.69 9.07 45.56 0.41 4.11 16 32 H 0.41 6.82 7.87 -40.82 -0.32 6.50 16 33 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16 34 H 0.01 0.25 7.47 -51.93 -0.39 -0.13 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.14 2.86 6.20 -52.48 -0.33 2.53 16 LS Contribution 310.88 15.07 4.68 4.68 Total: -1.00 -30.98 310.88 -6.50 -37.47 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -4.19 Total: 8.44 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -2.38 Total: -10.38 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.58 Total: -36.90 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.17 Total: -19.87 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.98 -6.50 -37.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601845330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.149 kcal (2) G-P(sol) polarization free energy of solvation -30.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds