Wall clock time and date at job start Mon Mar 30 2020 07:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38278 * 119.91882 * 2 1 4 4 C 1.38242 * 120.18239 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.99357 * 179.97438 * 4 3 2 6 6 C 1.38552 * 120.01198 * 0.02562 * 4 3 2 7 7 O 1.35972 * 120.08309 * 179.97438 * 6 4 3 8 8 C 1.39297 * 119.83644 * 359.97438 * 6 4 3 9 9 N 1.40119 * 120.08874 * 180.02562 * 8 6 4 10 10 C 1.34778 * 119.99826 * 214.91003 * 9 8 6 11 11 O 1.21294 * 120.00373 * 355.54953 * 10 9 8 12 12 C 1.50704 * 120.00066 * 175.55308 * 10 9 8 13 13 H 1.09002 * 109.47174 * 299.99770 * 12 10 9 14 14 C 1.52995 * 109.47027 * 59.99828 * 12 10 9 15 15 C 1.50693 * 109.47147 * 180.02562 * 12 10 9 16 16 H 1.07998 * 120.00071 * 359.97438 * 15 12 10 17 17 C 1.37887 * 120.00038 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99616 * 359.97438 * 17 15 12 19 19 Si 1.86793 * 120.00063 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.47373 * 89.99920 * 19 17 15 21 21 H 1.48502 * 109.47234 * 209.99755 * 19 17 15 22 22 H 1.48503 * 109.47196 * 329.99889 * 19 17 15 23 23 C 1.38194 * 119.91814 * 180.23563 * 2 1 3 24 24 H 1.08999 * 109.47142 * 89.99880 * 1 2 3 25 25 H 1.09000 * 109.47237 * 209.99695 * 1 2 3 26 26 H 1.09007 * 109.47151 * 329.99838 * 1 2 3 27 27 H 1.08002 * 119.90858 * 359.97438 * 3 2 1 28 28 H 1.09007 * 109.47258 * 270.02028 * 5 4 3 29 29 H 1.08998 * 109.47263 * 30.02095 * 5 4 3 30 30 H 1.08997 * 109.47043 * 150.02762 * 5 4 3 31 31 H 0.96710 * 114.00050 * 269.97951 * 7 6 4 32 32 H 0.97000 * 120.00248 * 34.91083 * 9 8 6 33 33 H 1.09007 * 109.47347 * 180.02562 * 14 12 10 34 34 H 1.09000 * 109.47492 * 300.00015 * 14 12 10 35 35 H 1.08997 * 109.47267 * 60.00437 * 14 12 10 36 36 H 0.97005 * 119.99497 * 179.97438 * 18 17 15 37 37 H 1.08004 * 120.00956 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1985 0.0000 4 6 3.5791 1.2049 0.0005 5 6 4.3264 2.5135 -0.0001 6 6 4.2776 0.0083 0.0005 7 8 5.6373 0.0129 0.0005 8 6 3.5835 -1.1994 0.0005 9 7 4.2845 -2.4126 0.0011 10 6 3.7932 -3.4751 -0.6669 11 8 2.7063 -3.4062 -1.2007 12 6 4.5943 -4.7489 -0.7504 13 1 5.5470 -4.5475 -1.2403 14 6 4.8492 -5.2844 0.6599 15 6 3.8275 -5.7732 -1.5464 16 1 2.8569 -5.5268 -1.9509 17 6 4.3645 -7.0256 -1.7573 18 7 5.5462 -7.3258 -1.2642 19 14 3.4137 -8.2956 -2.7433 20 1 3.7686 -8.1739 -4.1801 21 1 3.7599 -9.6569 -2.2615 22 1 1.9566 -8.0656 -2.5722 23 6 2.1962 -1.1978 -0.0049 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.6538 2.1322 -0.0004 28 1 4.5067 2.8285 -1.0279 29 1 3.7337 3.2706 0.5134 30 1 5.2794 2.3878 0.5138 31 1 6.0307 0.0139 -0.8830 32 1 5.1235 -2.4878 0.4822 33 1 5.4290 -6.2055 0.5995 34 1 5.4040 -4.5433 1.2353 35 1 3.8966 -5.4859 1.1497 36 1 5.9238 -8.2070 -1.4123 37 1 1.6550 -2.1324 -0.0092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601845330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:29 Heat of formation + Delta-G solvation = -91.453523 kcal Electronic energy + Delta-G solvation = -19712.959009 eV Core-core repulsion = 16646.912564 eV Total energy + Delta-G solvation = -3066.046445 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.72569 -40.08431 -37.82540 -35.97516 -35.79174 -33.72539 -32.77627 -30.87094 -28.00232 -27.29730 -27.12306 -25.12283 -22.88452 -22.01601 -20.81486 -19.37481 -18.54305 -18.17244 -17.32019 -16.99360 -16.64070 -16.32844 -15.64253 -15.09996 -15.01887 -14.54310 -14.49000 -14.27807 -13.90491 -13.58078 -13.56217 -13.13667 -12.99771 -12.79739 -12.74933 -12.67442 -12.54718 -12.26473 -12.24292 -12.04108 -11.71920 -11.10269 -11.06680 -10.61600 -10.34073 -9.38260 -8.99313 -8.18449 -6.29534 0.20539 0.33066 1.39812 1.40620 1.52326 1.77196 2.17017 2.45010 2.63604 3.11386 3.29995 3.84931 3.91149 4.13823 4.36866 4.40295 4.44501 4.66385 4.69148 4.80008 4.82741 4.86748 4.87967 4.92868 4.95390 5.10438 5.22084 5.32146 5.41623 5.43678 5.59712 5.66111 5.70914 5.87569 5.99801 6.13705 6.56476 6.77564 6.78998 7.29105 7.41180 8.87521 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028484 B = 0.004955 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.761881 B = 5649.141629 C = 6315.736178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.079 4.079 3 C -0.126 4.126 4 C -0.091 4.091 5 C -0.104 4.104 6 C 0.059 3.941 7 O -0.494 6.494 8 C 0.113 3.887 9 N -0.667 5.667 10 C 0.522 3.478 11 O -0.559 6.559 12 C 0.029 3.971 13 H 0.046 0.954 14 C -0.122 4.122 15 C -0.531 4.531 16 H 0.050 0.950 17 C 0.021 3.979 18 N -0.910 5.910 19 Si 0.957 3.043 20 H -0.274 1.274 21 H -0.274 1.274 22 H -0.278 1.278 23 C -0.146 4.146 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.159 0.841 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.400 0.600 32 H 0.419 0.581 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.024 0.976 36 H 0.266 0.734 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 18.631 3.825 19.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.080 4.080 3 C -0.144 4.144 4 C -0.092 4.092 5 C -0.160 4.160 6 C 0.012 3.988 7 O -0.305 6.305 8 C 0.018 3.982 9 N -0.313 5.313 10 C 0.312 3.688 11 O -0.437 6.437 12 C 0.008 3.992 13 H 0.063 0.937 14 C -0.180 4.180 15 C -0.569 4.569 16 H 0.069 0.931 17 C -0.178 4.178 18 N -0.549 5.549 19 Si 0.783 3.217 20 H -0.200 1.200 21 H -0.199 1.199 22 H -0.203 1.203 23 C -0.167 4.167 24 H 0.093 0.907 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.176 0.824 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.258 0.742 32 H 0.257 0.743 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.884 18.450 4.043 19.107 hybrid contribution 0.187 -1.387 -0.867 1.646 sum -2.697 17.064 3.176 17.565 Atomic orbital electron populations 1.20811 0.89206 1.03604 1.02993 1.20121 0.97648 0.91992 0.98194 1.21114 0.92874 0.98127 1.02317 1.20346 0.94306 0.95112 0.99420 1.20706 1.00148 0.91807 1.03348 1.18058 0.83578 0.90268 1.06913 1.84738 1.14856 1.96163 1.34777 1.18535 0.92049 0.85791 1.01823 1.43633 1.26397 1.09095 1.52162 1.21865 0.86396 0.85330 0.75170 1.90509 1.22850 1.83328 1.46977 1.18813 0.95265 0.88451 0.96689 0.93668 1.21590 0.99782 1.02416 0.94225 1.21243 1.04359 0.97706 1.33578 0.93134 1.25600 0.95925 0.99715 0.96598 1.69947 1.17132 1.22210 1.45611 0.85563 0.78758 0.78363 0.79015 1.19950 1.19901 1.20337 1.21121 0.92644 0.99233 1.03705 0.90663 0.92292 0.88727 0.82388 0.89964 0.89552 0.91089 0.74225 0.74269 0.90625 0.93257 0.95684 0.92482 0.87074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.36 10.01 71.23 0.71 -1.65 16 2 C -0.08 -2.19 5.88 -19.87 -0.12 -2.31 16 3 C -0.13 -2.84 9.34 22.28 0.21 -2.63 16 4 C -0.09 -2.12 5.89 -19.79 -0.12 -2.24 16 5 C -0.10 -1.62 9.79 71.24 0.70 -0.93 16 6 C 0.06 1.68 6.69 22.60 0.15 1.84 16 7 O -0.49 -12.05 12.11 -93.24 -1.13 -13.18 16 8 C 0.11 4.00 6.32 38.19 0.24 4.25 16 9 N -0.67 -25.24 5.11 -303.13 -1.55 -26.78 16 10 C 0.52 24.58 7.00 87.66 0.61 25.19 16 11 O -0.56 -29.83 12.88 -3.07 -0.04 -29.87 16 12 C 0.03 1.47 2.64 -12.29 -0.03 1.44 16 13 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 14 C -0.12 -5.65 8.86 71.98 0.64 -5.01 16 15 C -0.53 -30.68 8.38 25.60 0.21 -30.47 16 16 H 0.05 3.12 6.75 -2.91 -0.02 3.10 16 17 C 0.02 1.18 5.30 84.66 0.45 1.62 16 18 N -0.91 -50.90 11.32 21.45 0.24 -50.66 16 19 Si 0.96 44.80 29.54 68.60 2.03 46.82 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 23 C -0.15 -5.30 8.35 22.38 0.19 -5.11 16 24 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.06 1.36 8.09 -2.39 -0.02 1.34 16 26 H 0.09 1.44 8.08 -2.38 -0.02 1.42 16 27 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 28 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.09 1.02 8.09 -2.39 -0.02 1.00 16 30 H 0.07 1.16 7.53 -2.39 -0.02 1.14 16 31 H 0.40 6.93 9.07 -74.05 -0.67 6.25 16 32 H 0.42 13.91 7.87 -92.71 -0.73 13.18 16 33 H 0.08 3.83 6.07 -2.38 -0.01 3.82 16 34 H 0.05 1.87 7.47 -2.39 -0.02 1.85 16 35 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.27 14.06 8.31 -92.70 -0.77 13.29 16 37 H 0.11 4.73 6.20 -2.91 -0.02 4.71 16 Total: -1.00 -68.97 310.88 3.10 -65.87 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.30 Total: 23.81 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 3.85 Total: -16.01 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -1.31 Total: -77.45 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -1.17 Total: -43.05 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -68.97 3.10 -65.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601845330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.582 kcal (2) G-P(sol) polarization free energy of solvation -68.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds