Wall clock time and date at job start Mon Mar 30 2020 06:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86805 * 119.99913 * 2 1 4 4 H 1.48497 * 109.47458 * 270.00373 * 3 2 1 5 5 H 1.48499 * 109.47000 * 30.00510 * 3 2 1 6 6 H 1.48506 * 109.47033 * 150.00125 * 3 2 1 7 7 C 1.38652 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99646 * 0.02562 * 7 2 1 9 9 O 1.34826 * 120.00021 * 179.97438 * 7 2 1 10 10 C 1.35757 * 116.99903 * 185.05855 * 9 7 2 11 11 C 1.38881 * 120.06716 * 354.46974 * 10 9 7 12 12 C 1.38105 * 119.92718 * 180.02562 * 11 10 9 13 13 C 1.38299 * 120.06865 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.92842 * 179.97438 * 13 12 11 15 15 N 1.46900 * 109.47177 * 90.00611 * 14 13 12 16 16 O 1.46294 * 111.00431 * 179.97438 * 15 14 13 17 17 C 1.42900 * 114.00327 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.47232 * 179.97438 * 17 16 15 19 19 C 1.52997 * 117.49997 * 243.62413 * 18 17 16 20 20 C 1.53001 * 60.00398 * 252.51241 * 19 18 17 21 21 C 1.38298 * 120.13988 * 0.26055 * 13 12 11 22 22 C 1.38103 * 120.07051 * 359.44253 * 21 13 12 23 23 H 0.97000 * 120.00375 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.03429 * 359.97438 * 11 10 9 25 25 H 1.08000 * 119.96362 * 179.97438 * 12 11 10 26 26 H 1.08998 * 109.47386 * 330.00560 * 14 13 12 27 27 H 1.09003 * 109.47471 * 210.00847 * 14 13 12 28 28 H 1.00903 * 110.99671 * 303.95541 * 15 14 13 29 29 H 1.08999 * 109.47019 * 60.00229 * 17 16 15 30 30 H 1.08993 * 109.47588 * 300.00377 * 17 16 15 31 31 H 1.09004 * 115.54952 * 29.33362 * 18 17 16 32 32 H 1.09006 * 117.49913 * 0.02562 * 19 18 17 33 33 H 1.09003 * 117.49927 * 145.02271 * 19 18 17 34 34 H 1.08997 * 117.50008 * 252.51691 * 20 19 18 35 35 H 1.08997 * 117.50318 * 107.48556 * 20 19 18 36 36 H 1.08005 * 119.96279 * 179.70092 * 21 13 12 37 37 H 1.07990 * 120.03614 * 180.27774 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0466 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 1.4688 -2.1361 -0.0014 9 8 3.3571 -1.2007 -0.0011 10 6 3.9734 -2.4055 -0.1082 11 6 3.2234 -3.5743 -0.0954 12 6 3.8534 -4.7985 -0.2040 13 6 5.2297 -4.8612 -0.3250 14 6 5.9139 -6.1986 -0.4428 15 7 6.0180 -6.5723 -1.8597 16 8 6.6792 -7.8683 -2.0130 17 6 6.8139 -8.2952 -3.3700 18 6 7.5157 -9.6542 -3.4099 19 6 8.8800 -9.7248 -4.0988 20 6 7.6509 -10.3399 -4.7711 21 6 5.9798 -3.6993 -0.3322 22 6 5.3553 -2.4718 -0.2301 23 1 -0.4851 0.8400 0.0004 24 1 2.1488 -3.5260 0.0003 25 1 3.2708 -5.7078 -0.1937 26 1 5.3335 -6.9519 0.0899 27 1 6.9121 -6.1356 -0.0094 28 1 5.1104 -6.5747 -2.3006 29 1 7.4046 -7.5654 -3.9236 30 1 5.8265 -8.3824 -3.8233 31 1 7.3576 -10.2907 -2.5392 32 1 9.2778 -8.8030 -4.5233 33 1 9.6199 -10.4078 -3.6813 34 1 7.5820 -11.4274 -4.7957 35 1 7.2398 -9.8228 -5.6381 36 1 7.0548 -3.7518 -0.4220 37 1 5.9412 -1.5647 -0.2402 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688535618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:23 Heat of formation + Delta-G solvation = 22.017571 kcal Electronic energy + Delta-G solvation = -18341.260238 eV Core-core repulsion = 15280.134269 eV Total energy + Delta-G solvation = -3061.125969 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.29576 -38.16294 -37.17231 -36.04161 -33.05988 -32.30860 -30.32446 -28.96835 -26.65623 -25.44065 -23.73251 -22.69150 -22.12450 -20.95581 -20.37321 -17.98410 -17.52829 -17.14579 -16.04709 -15.47942 -15.19280 -14.86575 -14.55149 -14.09455 -14.07856 -13.81595 -13.56020 -13.35317 -12.73650 -12.57876 -12.24305 -12.03475 -11.86694 -11.56634 -11.34890 -11.07677 -10.92068 -10.80575 -10.72550 -10.68700 -10.20327 -10.00849 -9.45006 -8.93772 -8.63534 -8.32767 -7.41938 -6.47250 -4.14078 1.94663 2.07352 2.75943 3.19147 3.22996 3.37234 3.49337 4.19337 4.37582 4.51422 4.58325 4.62634 4.79488 5.01077 5.05145 5.10778 5.30028 5.30839 5.34019 5.43147 5.51433 5.57209 5.60075 5.68997 5.78777 5.82861 5.97833 6.06893 6.26153 6.49197 6.61694 6.72638 6.95695 7.16979 7.20186 7.30080 7.53787 7.73571 7.97422 8.87626 9.48986 10.60081 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.044522 B = 0.002899 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.756335 B = 9657.241082 C = 9765.457424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.391 4.391 8 H 0.107 0.893 9 O -0.214 6.214 10 C 0.165 3.835 11 C -0.222 4.222 12 C -0.062 4.062 13 C -0.183 4.183 14 C 0.110 3.890 15 N -0.500 5.500 16 O -0.260 6.260 17 C 0.093 3.907 18 C -0.152 4.152 19 C -0.176 4.176 20 C -0.174 4.174 21 C -0.049 4.049 22 C -0.194 4.194 23 H 0.280 0.720 24 H 0.134 0.866 25 H 0.108 0.892 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.334 0.666 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.739 -15.171 -5.757 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.124 0.876 9 O -0.118 6.118 10 C 0.112 3.888 11 C -0.242 4.242 12 C -0.081 4.081 13 C -0.185 4.185 14 C -0.018 4.018 15 N -0.171 5.171 16 O -0.267 6.267 17 C 0.015 3.985 18 C -0.171 4.171 19 C -0.213 4.213 20 C -0.211 4.211 21 C -0.067 4.067 22 C -0.214 4.214 23 H 0.090 0.910 24 H 0.152 0.848 25 H 0.126 0.874 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.150 0.850 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.129 0.871 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.135 0.865 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.270 -14.564 -5.658 20.499 hybrid contribution -0.846 0.122 0.106 0.861 sum 12.425 -14.442 -5.553 19.844 Atomic orbital electron populations 1.69640 1.05603 1.28622 1.47597 1.24482 0.95042 0.98916 0.95530 0.86173 0.80342 0.81323 0.79033 1.19809 1.20723 1.18306 1.20780 0.76827 0.96686 1.52361 0.87561 1.83577 1.22696 1.25804 1.79770 1.19175 0.91756 0.85478 0.92347 1.21239 1.01166 0.91721 1.10033 1.20682 0.93314 0.96851 0.97283 1.18958 0.93344 0.93000 1.13175 1.20780 1.00785 0.93437 0.86775 1.66947 1.26203 1.07322 1.16657 1.90710 1.77637 1.33322 1.25024 1.21866 0.98808 0.93125 0.84666 1.22119 1.00205 0.97603 0.97205 1.23078 0.91169 1.03200 1.03830 1.22981 1.02438 1.00216 0.95454 1.20514 0.98651 0.90968 0.96616 1.20232 0.91917 0.97938 1.11278 0.90952 0.84820 0.87407 0.93970 0.89765 0.85016 0.92404 0.93198 0.87112 0.88448 0.88665 0.88449 0.88549 0.86526 0.86314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.01 13.96 55.48 0.77 -24.24 16 2 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 21.38 28.62 -169.99 -4.86 16.52 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.39 -10.85 9.95 30.89 0.31 -10.54 16 8 H 0.11 3.00 5.44 -52.48 -0.29 2.72 16 9 O -0.21 -5.55 8.59 0.04 0.00 -5.55 16 10 C 0.17 3.73 6.65 -39.11 -0.26 3.47 16 11 C -0.22 -4.66 9.17 -39.39 -0.36 -5.02 16 12 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 13 C -0.18 -2.97 5.40 -104.58 -0.56 -3.53 16 14 C 0.11 1.54 6.35 -4.98 -0.03 1.51 16 15 N -0.50 -6.88 7.32 -11.41 -0.08 -6.96 16 16 O -0.26 -3.52 11.28 -13.92 -0.16 -3.67 16 17 C 0.09 0.99 6.67 37.16 0.25 1.24 16 18 C -0.15 -1.37 6.06 -90.62 -0.55 -1.92 16 19 C -0.18 -1.36 10.18 -26.73 -0.27 -1.63 16 20 C -0.17 -1.23 10.25 -26.73 -0.27 -1.51 16 21 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 22 C -0.19 -3.77 9.99 -39.39 -0.39 -4.16 16 23 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.13 2.94 5.64 -52.49 -0.30 2.65 16 25 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 26 H 0.04 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 28 H 0.33 4.30 8.91 -39.29 -0.35 3.95 16 29 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.10 0.74 8.03 -51.93 -0.42 0.32 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 37 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 321.87 15.07 4.85 4.85 Total: -1.00 -29.02 321.87 -7.61 -36.63 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.11 Total: 5.51 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -3.01 Total: -23.08 kcal Atomic # 7 Polarization: -31.89 SS G_CDS: 0.69 Total: -31.20 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.16 Total: -9.23 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.86 Total: 16.52 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.02 -7.61 -36.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688535618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.646 kcal (2) G-P(sol) polarization free energy of solvation -29.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds