Wall clock time and date at job start Mon Mar 30 2020 06:53:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31550 * 1
3 3 Si 1.86805 * 119.99913 * 2 1
4 4 H 1.48497 * 109.47458 * 270.00373 * 3 2 1
5 5 H 1.48499 * 109.47000 * 30.00510 * 3 2 1
6 6 H 1.48506 * 109.47033 * 150.00125 * 3 2 1
7 7 C 1.38652 * 120.00325 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99646 * 0.02562 * 7 2 1
9 9 O 1.34826 * 120.00021 * 179.97438 * 7 2 1
10 10 C 1.35757 * 116.99903 * 185.05855 * 9 7 2
11 11 C 1.38881 * 120.06716 * 354.46974 * 10 9 7
12 12 C 1.38105 * 119.92718 * 180.02562 * 11 10 9
13 13 C 1.38299 * 120.06865 * 0.02562 * 12 11 10
14 14 C 1.50695 * 119.92842 * 179.97438 * 13 12 11
15 15 N 1.46900 * 109.47177 * 90.00611 * 14 13 12
16 16 O 1.46294 * 111.00431 * 179.97438 * 15 14 13
17 17 C 1.42900 * 114.00327 * 179.97438 * 16 15 14
18 18 C 1.52999 * 109.47232 * 179.97438 * 17 16 15
19 19 C 1.52997 * 117.49997 * 243.62413 * 18 17 16
20 20 C 1.53001 * 60.00398 * 252.51241 * 19 18 17
21 21 C 1.38298 * 120.13988 * 0.26055 * 13 12 11
22 22 C 1.38103 * 120.07051 * 359.44253 * 21 13 12
23 23 H 0.97000 * 120.00375 * 359.97438 * 1 2 3
24 24 H 1.07997 * 120.03429 * 359.97438 * 11 10 9
25 25 H 1.08000 * 119.96362 * 179.97438 * 12 11 10
26 26 H 1.08998 * 109.47386 * 330.00560 * 14 13 12
27 27 H 1.09003 * 109.47471 * 210.00847 * 14 13 12
28 28 H 1.00903 * 110.99671 * 303.95541 * 15 14 13
29 29 H 1.08999 * 109.47019 * 60.00229 * 17 16 15
30 30 H 1.08993 * 109.47588 * 300.00377 * 17 16 15
31 31 H 1.09004 * 115.54952 * 29.33362 * 18 17 16
32 32 H 1.09006 * 117.49913 * 0.02562 * 19 18 17
33 33 H 1.09003 * 117.49927 * 145.02271 * 19 18 17
34 34 H 1.08997 * 117.50008 * 252.51691 * 20 19 18
35 35 H 1.08997 * 117.50318 * 107.48556 * 20 19 18
36 36 H 1.08005 * 119.96279 * 179.70092 * 21 13 12
37 37 H 1.07990 * 120.03614 * 180.27774 * 22 21 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2495 1.6178 0.0000
4 1 2.4970 2.0466 -1.4000
5 1 1.4470 2.6526 0.7001
6 1 3.5471 1.4402 0.7000
7 6 2.0088 -1.2007 -0.0005
8 1 1.4688 -2.1361 -0.0014
9 8 3.3571 -1.2007 -0.0011
10 6 3.9734 -2.4055 -0.1082
11 6 3.2234 -3.5743 -0.0954
12 6 3.8534 -4.7985 -0.2040
13 6 5.2297 -4.8612 -0.3250
14 6 5.9139 -6.1986 -0.4428
15 7 6.0180 -6.5723 -1.8597
16 8 6.6792 -7.8683 -2.0130
17 6 6.8139 -8.2952 -3.3700
18 6 7.5157 -9.6542 -3.4099
19 6 8.8800 -9.7248 -4.0988
20 6 7.6509 -10.3399 -4.7711
21 6 5.9798 -3.6993 -0.3322
22 6 5.3553 -2.4718 -0.2301
23 1 -0.4851 0.8400 0.0004
24 1 2.1488 -3.5260 0.0003
25 1 3.2708 -5.7078 -0.1937
26 1 5.3335 -6.9519 0.0899
27 1 6.9121 -6.1356 -0.0094
28 1 5.1104 -6.5747 -2.3006
29 1 7.4046 -7.5654 -3.9236
30 1 5.8265 -8.3824 -3.8233
31 1 7.3576 -10.2907 -2.5392
32 1 9.2778 -8.8030 -4.5233
33 1 9.6199 -10.4078 -3.6813
34 1 7.5820 -11.4274 -4.7957
35 1 7.2398 -9.8228 -5.6381
36 1 7.0548 -3.7518 -0.4220
37 1 5.9412 -1.5647 -0.2402
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000688535618.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:53:23
Heat of formation + Delta-G solvation = 22.017571 kcal
Electronic energy + Delta-G solvation = -18341.260238 eV
Core-core repulsion = 15280.134269 eV
Total energy + Delta-G solvation = -3061.125969 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 263.131 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-39.29576 -38.16294 -37.17231 -36.04161 -33.05988 -32.30860 -30.32446 -28.96835
-26.65623 -25.44065 -23.73251 -22.69150 -22.12450 -20.95581 -20.37321 -17.98410
-17.52829 -17.14579 -16.04709 -15.47942 -15.19280 -14.86575 -14.55149 -14.09455
-14.07856 -13.81595 -13.56020 -13.35317 -12.73650 -12.57876 -12.24305 -12.03475
-11.86694 -11.56634 -11.34890 -11.07677 -10.92068 -10.80575 -10.72550 -10.68700
-10.20327 -10.00849 -9.45006 -8.93772 -8.63534 -8.32767 -7.41938 -6.47250
-4.14078 1.94663 2.07352 2.75943 3.19147 3.22996 3.37234 3.49337
4.19337 4.37582 4.51422 4.58325 4.62634 4.79488 5.01077 5.05145
5.10778 5.30028 5.30839 5.34019 5.43147 5.51433 5.57209 5.60075
5.68997 5.78777 5.82861 5.97833 6.06893 6.26153 6.49197 6.61694
6.72638 6.95695 7.16979 7.20186 7.30080 7.53787 7.73571 7.97422
8.87626 9.48986 10.60081
Molecular weight = 263.13amu
Principal moments of inertia in cm(-1)
A = 0.044522 B = 0.002899 C = 0.002867
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 628.756335 B = 9657.241082 C = 9765.457424
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.877 5.877
2 C 0.064 3.936
3 Si 0.906 3.094
4 H -0.273 1.273
5 H -0.282 1.282
6 H -0.259 1.259
7 C -0.391 4.391
8 H 0.107 0.893
9 O -0.214 6.214
10 C 0.165 3.835
11 C -0.222 4.222
12 C -0.062 4.062
13 C -0.183 4.183
14 C 0.110 3.890
15 N -0.500 5.500
16 O -0.260 6.260
17 C 0.093 3.907
18 C -0.152 4.152
19 C -0.176 4.176
20 C -0.174 4.174
21 C -0.049 4.049
22 C -0.194 4.194
23 H 0.280 0.720
24 H 0.134 0.866
25 H 0.108 0.892
26 H 0.042 0.958
27 H 0.084 0.916
28 H 0.334 0.666
29 H 0.058 0.942
30 H 0.050 0.950
31 H 0.111 0.889
32 H 0.097 0.903
33 H 0.095 0.905
34 H 0.097 0.903
35 H 0.096 0.904
36 H 0.117 0.883
37 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.739 -15.171 -5.757 20.630
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.515 5.515
2 C -0.140 4.140
3 Si 0.731 3.269
4 H -0.198 1.198
5 H -0.207 1.207
6 H -0.183 1.183
7 C -0.467 4.467
8 H 0.124 0.876
9 O -0.118 6.118
10 C 0.112 3.888
11 C -0.242 4.242
12 C -0.081 4.081
13 C -0.185 4.185
14 C -0.018 4.018
15 N -0.171 5.171
16 O -0.267 6.267
17 C 0.015 3.985
18 C -0.171 4.171
19 C -0.213 4.213
20 C -0.211 4.211
21 C -0.067 4.067
22 C -0.214 4.214
23 H 0.090 0.910
24 H 0.152 0.848
25 H 0.126 0.874
26 H 0.060 0.940
27 H 0.102 0.898
28 H 0.150 0.850
29 H 0.076 0.924
30 H 0.068 0.932
31 H 0.129 0.871
32 H 0.116 0.884
33 H 0.113 0.887
34 H 0.116 0.884
35 H 0.115 0.885
36 H 0.135 0.865
37 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges 13.270 -14.564 -5.658 20.499
hybrid contribution -0.846 0.122 0.106 0.861
sum 12.425 -14.442 -5.553 19.844
Atomic orbital electron populations
1.69640 1.05603 1.28622 1.47597 1.24482 0.95042 0.98916 0.95530
0.86173 0.80342 0.81323 0.79033 1.19809 1.20723 1.18306 1.20780
0.76827 0.96686 1.52361 0.87561 1.83577 1.22696 1.25804 1.79770
1.19175 0.91756 0.85478 0.92347 1.21239 1.01166 0.91721 1.10033
1.20682 0.93314 0.96851 0.97283 1.18958 0.93344 0.93000 1.13175
1.20780 1.00785 0.93437 0.86775 1.66947 1.26203 1.07322 1.16657
1.90710 1.77637 1.33322 1.25024 1.21866 0.98808 0.93125 0.84666
1.22119 1.00205 0.97603 0.97205 1.23078 0.91169 1.03200 1.03830
1.22981 1.02438 1.00216 0.95454 1.20514 0.98651 0.90968 0.96616
1.20232 0.91917 0.97938 1.11278 0.90952 0.84820 0.87407 0.93970
0.89765 0.85016 0.92404 0.93198 0.87112 0.88448 0.88665 0.88449
0.88549 0.86526 0.86314
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.01 13.96 55.48 0.77 -24.24 16
2 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16
3 Si 0.91 21.38 28.62 -169.99 -4.86 16.52 16
4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16
5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16
6 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16
7 C -0.39 -10.85 9.95 30.89 0.31 -10.54 16
8 H 0.11 3.00 5.44 -52.48 -0.29 2.72 16
9 O -0.21 -5.55 8.59 0.04 0.00 -5.55 16
10 C 0.17 3.73 6.65 -39.11 -0.26 3.47 16
11 C -0.22 -4.66 9.17 -39.39 -0.36 -5.02 16
12 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16
13 C -0.18 -2.97 5.40 -104.58 -0.56 -3.53 16
14 C 0.11 1.54 6.35 -4.98 -0.03 1.51 16
15 N -0.50 -6.88 7.32 -11.41 -0.08 -6.96 16
16 O -0.26 -3.52 11.28 -13.92 -0.16 -3.67 16
17 C 0.09 0.99 6.67 37.16 0.25 1.24 16
18 C -0.15 -1.37 6.06 -90.62 -0.55 -1.92 16
19 C -0.18 -1.36 10.18 -26.73 -0.27 -1.63 16
20 C -0.17 -1.23 10.25 -26.73 -0.27 -1.51 16
21 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16
22 C -0.19 -3.77 9.99 -39.39 -0.39 -4.16 16
23 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16
24 H 0.13 2.94 5.64 -52.49 -0.30 2.65 16
25 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16
26 H 0.04 0.56 8.08 -51.93 -0.42 0.14 16
27 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16
28 H 0.33 4.30 8.91 -39.29 -0.35 3.95 16
29 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16
30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
31 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16
32 H 0.10 0.74 8.03 -51.93 -0.42 0.32 16
33 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16
34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16
35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16
36 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16
37 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16
LS Contribution 321.87 15.07 4.85 4.85
Total: -1.00 -29.02 321.87 -7.61 -36.63
By element:
Atomic # 1 Polarization: 10.62 SS G_CDS: -5.11 Total: 5.51 kcal
Atomic # 6 Polarization: -20.06 SS G_CDS: -3.01 Total: -23.08 kcal
Atomic # 7 Polarization: -31.89 SS G_CDS: 0.69 Total: -31.20 kcal
Atomic # 8 Polarization: -9.07 SS G_CDS: -0.16 Total: -9.23 kcal
Atomic # 14 Polarization: 21.38 SS G_CDS: -4.86 Total: 16.52 kcal
Total LS contribution 4.85 Total: 4.85 kcal
Total: -29.02 -7.61 -36.63 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000688535618.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.646 kcal
(2) G-P(sol) polarization free energy of solvation -29.021 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.625 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.018 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds