Wall clock time and date at job start Mon Mar 30 2020 06:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86805 * 119.99913 * 2 1 4 4 H 1.48497 * 109.47458 * 270.00373 * 3 2 1 5 5 H 1.48499 * 109.47000 * 30.00510 * 3 2 1 6 6 H 1.48506 * 109.47033 * 150.00125 * 3 2 1 7 7 C 1.38652 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99646 * 0.02562 * 7 2 1 9 9 O 1.34826 * 120.00021 * 179.97438 * 7 2 1 10 10 C 1.35757 * 116.99903 * 185.05855 * 9 7 2 11 11 C 1.38881 * 120.06716 * 354.46974 * 10 9 7 12 12 C 1.38105 * 119.92718 * 180.02562 * 11 10 9 13 13 C 1.38299 * 120.06865 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.92842 * 179.97438 * 13 12 11 15 15 N 1.46900 * 109.47177 * 90.00611 * 14 13 12 16 16 O 1.46294 * 111.00431 * 179.97438 * 15 14 13 17 17 C 1.42900 * 114.00327 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.47232 * 179.97438 * 17 16 15 19 19 C 1.52997 * 117.49997 * 243.62413 * 18 17 16 20 20 C 1.53001 * 60.00398 * 252.51241 * 19 18 17 21 21 C 1.38298 * 120.13988 * 0.26055 * 13 12 11 22 22 C 1.38103 * 120.07051 * 359.44253 * 21 13 12 23 23 H 0.97000 * 120.00375 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.03429 * 359.97438 * 11 10 9 25 25 H 1.08000 * 119.96362 * 179.97438 * 12 11 10 26 26 H 1.08998 * 109.47386 * 330.00560 * 14 13 12 27 27 H 1.09003 * 109.47471 * 210.00847 * 14 13 12 28 28 H 1.00903 * 110.99671 * 303.95541 * 15 14 13 29 29 H 1.08999 * 109.47019 * 60.00229 * 17 16 15 30 30 H 1.08993 * 109.47588 * 300.00377 * 17 16 15 31 31 H 1.09004 * 115.54952 * 29.33362 * 18 17 16 32 32 H 1.09006 * 117.49913 * 0.02562 * 19 18 17 33 33 H 1.09003 * 117.49927 * 145.02271 * 19 18 17 34 34 H 1.08997 * 117.50008 * 252.51691 * 20 19 18 35 35 H 1.08997 * 117.50318 * 107.48556 * 20 19 18 36 36 H 1.08005 * 119.96279 * 179.70092 * 21 13 12 37 37 H 1.07990 * 120.03614 * 180.27774 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0466 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 1.4688 -2.1361 -0.0014 9 8 3.3571 -1.2007 -0.0011 10 6 3.9734 -2.4055 -0.1082 11 6 3.2234 -3.5743 -0.0954 12 6 3.8534 -4.7985 -0.2040 13 6 5.2297 -4.8612 -0.3250 14 6 5.9139 -6.1986 -0.4428 15 7 6.0180 -6.5723 -1.8597 16 8 6.6792 -7.8683 -2.0130 17 6 6.8139 -8.2952 -3.3700 18 6 7.5157 -9.6542 -3.4099 19 6 8.8800 -9.7248 -4.0988 20 6 7.6509 -10.3399 -4.7711 21 6 5.9798 -3.6993 -0.3322 22 6 5.3553 -2.4718 -0.2301 23 1 -0.4851 0.8400 0.0004 24 1 2.1488 -3.5260 0.0003 25 1 3.2708 -5.7078 -0.1937 26 1 5.3335 -6.9519 0.0899 27 1 6.9121 -6.1356 -0.0094 28 1 5.1104 -6.5747 -2.3006 29 1 7.4046 -7.5654 -3.9236 30 1 5.8265 -8.3824 -3.8233 31 1 7.3576 -10.2907 -2.5392 32 1 9.2778 -8.8030 -4.5233 33 1 9.6199 -10.4078 -3.6813 34 1 7.5820 -11.4274 -4.7957 35 1 7.2398 -9.8228 -5.6381 36 1 7.0548 -3.7518 -0.4220 37 1 5.9412 -1.5647 -0.2402 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688535618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:23 Heat of formation + Delta-G solvation = 5.101462 kcal Electronic energy + Delta-G solvation = -18341.993776 eV Core-core repulsion = 15280.134269 eV Total energy + Delta-G solvation = -3061.859507 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.94564 -39.02752 -38.61242 -37.04244 -34.63038 -33.98528 -31.85711 -30.34184 -27.75636 -27.10546 -25.07852 -23.70236 -23.24545 -22.03967 -21.49658 -19.85736 -19.15404 -18.32358 -16.92105 -16.73833 -16.43343 -16.21238 -15.87714 -15.68151 -15.56523 -15.10415 -14.79571 -14.56264 -14.33708 -14.09500 -13.92886 -13.30120 -13.04651 -12.62776 -12.52179 -12.40691 -12.38056 -12.07026 -11.96961 -11.85548 -11.35445 -11.30204 -10.92157 -10.75388 -9.84996 -9.69827 -9.06142 -8.51226 -6.24160 0.47731 0.54552 1.32013 1.35373 1.52093 1.69348 2.27560 2.75436 2.87444 3.03981 3.14160 3.75452 3.86502 3.95608 3.98835 4.02803 4.14597 4.31548 4.35552 4.44900 4.52568 4.55843 4.71391 4.75675 4.78630 4.82182 4.95989 5.02025 5.21376 5.22531 5.25024 5.33467 5.53570 5.55544 5.72486 5.78675 5.87677 6.19504 6.28019 6.82965 7.56241 8.60135 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.044522 B = 0.002899 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.756335 B = 9657.241082 C = 9765.457424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.010 3.990 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.400 4.400 8 H 0.083 0.917 9 O -0.242 6.242 10 C 0.126 3.874 11 C -0.237 4.237 12 C -0.060 4.060 13 C -0.156 4.156 14 C 0.114 3.886 15 N -0.507 5.507 16 O -0.269 6.269 17 C 0.090 3.910 18 C -0.168 4.168 19 C -0.176 4.176 20 C -0.161 4.161 21 C -0.042 4.042 22 C -0.192 4.192 23 H 0.285 0.715 24 H 0.111 0.889 25 H 0.135 0.865 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.339 0.661 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.153 0.847 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.481 -16.747 -6.436 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.477 4.477 8 H 0.100 0.900 9 O -0.150 6.150 10 C 0.077 3.923 11 C -0.256 4.256 12 C -0.079 4.079 13 C -0.157 4.157 14 C -0.014 4.014 15 N -0.178 5.178 16 O -0.278 6.278 17 C 0.013 3.987 18 C -0.188 4.188 19 C -0.213 4.213 20 C -0.198 4.198 21 C -0.061 4.061 22 C -0.211 4.211 23 H 0.095 0.905 24 H 0.128 0.872 25 H 0.153 0.847 26 H 0.071 0.929 27 H 0.114 0.886 28 H 0.155 0.845 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.171 0.829 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 16.040 -16.179 -6.344 23.649 hybrid contribution -1.477 0.231 0.255 1.517 sum 14.563 -15.948 -6.088 22.438 Atomic orbital electron populations 1.69723 1.06918 1.29661 1.49950 1.25287 0.95881 1.02202 0.95458 0.85219 0.78829 0.77390 0.79307 1.19056 1.19241 1.18631 1.20717 0.78056 0.96173 1.52711 0.89991 1.83524 1.21291 1.27470 1.82684 1.19725 0.93230 0.85102 0.94246 1.21250 1.00296 0.93013 1.11083 1.20941 0.94298 0.96393 0.96221 1.19296 0.92752 0.94365 1.09288 1.20720 1.01272 0.91993 0.87410 1.66827 1.26573 1.08227 1.16143 1.90691 1.77560 1.32707 1.26806 1.22024 0.99419 0.93859 0.83397 1.22097 1.01455 0.96971 0.98255 1.23167 0.91087 1.03551 1.03516 1.23084 1.01384 1.00958 0.94409 1.20937 1.00470 0.89863 0.94822 1.20534 0.90555 0.99785 1.10265 0.90528 0.87153 0.84683 0.92869 0.88587 0.84539 0.92559 0.92541 0.87565 0.88430 0.87777 0.87156 0.87940 0.82949 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.75 13.96 21.61 0.30 -54.45 16 2 C 0.01 0.59 5.49 84.83 0.47 1.06 16 3 Si 0.97 45.08 28.62 68.60 1.96 47.04 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.26 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.40 -23.38 9.95 67.92 0.68 -22.70 16 8 H 0.08 5.00 5.44 -2.91 -0.02 4.99 16 9 O -0.24 -13.02 8.59 -22.78 -0.20 -13.22 16 10 C 0.13 5.80 6.65 22.58 0.15 5.95 16 11 C -0.24 -10.14 9.17 22.39 0.21 -9.94 16 12 C -0.06 -1.99 9.69 22.25 0.22 -1.77 16 13 C -0.16 -4.54 5.40 -19.84 -0.11 -4.65 16 14 C 0.11 2.74 6.35 85.56 0.54 3.29 16 15 N -0.51 -12.30 7.32 -190.01 -1.39 -13.69 16 16 O -0.27 -6.56 11.28 -50.14 -0.57 -7.12 16 17 C 0.09 1.72 6.67 71.98 0.48 2.20 16 18 C -0.17 -2.67 6.06 -10.79 -0.07 -2.73 16 19 C -0.18 -2.30 10.18 30.59 0.31 -1.99 16 20 C -0.16 -1.87 10.25 30.60 0.31 -1.56 16 21 C -0.04 -1.28 9.69 22.25 0.22 -1.07 16 22 C -0.19 -7.17 9.99 22.39 0.22 -6.95 16 23 H 0.29 15.51 8.31 -92.71 -0.77 14.74 16 24 H 0.11 5.20 5.64 -2.91 -0.02 5.19 16 25 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 26 H 0.05 1.21 8.08 -2.39 -0.02 1.19 16 27 H 0.10 2.16 8.08 -2.39 -0.02 2.14 16 28 H 0.34 7.72 8.91 -89.69 -0.80 6.92 16 29 H 0.06 1.08 7.87 -2.39 -0.02 1.06 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.10 1.26 8.03 -2.38 -0.02 1.24 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 37 H 0.13 4.51 8.06 -2.92 -0.02 4.49 16 Total: -1.00 -64.71 321.87 4.02 -60.69 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.27 Total: 21.61 kcal Atomic # 6 Polarization: -44.48 SS G_CDS: 3.63 Total: -40.86 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: -1.09 Total: -68.15 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.76 Total: -20.34 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.96 Total: 47.04 kcal Total: -64.71 4.02 -60.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688535618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.794 kcal (2) G-P(sol) polarization free energy of solvation -64.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds