Wall clock time and date at job start Mon Mar 30 2020 06:53:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31550 * 1
3 3 Si 1.86805 * 119.99913 * 2 1
4 4 H 1.48497 * 109.47458 * 270.00373 * 3 2 1
5 5 H 1.48499 * 109.47000 * 30.00510 * 3 2 1
6 6 H 1.48506 * 109.47033 * 150.00125 * 3 2 1
7 7 C 1.38652 * 120.00325 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99646 * 0.02562 * 7 2 1
9 9 O 1.34826 * 120.00021 * 179.97438 * 7 2 1
10 10 C 1.35757 * 116.99903 * 185.05855 * 9 7 2
11 11 C 1.38881 * 120.06716 * 354.46974 * 10 9 7
12 12 C 1.38105 * 119.92718 * 180.02562 * 11 10 9
13 13 C 1.38299 * 120.06865 * 0.02562 * 12 11 10
14 14 C 1.50695 * 119.92842 * 179.97438 * 13 12 11
15 15 N 1.46900 * 109.47177 * 90.00611 * 14 13 12
16 16 O 1.46294 * 111.00431 * 179.97438 * 15 14 13
17 17 C 1.42900 * 114.00327 * 179.97438 * 16 15 14
18 18 C 1.52999 * 109.47232 * 179.97438 * 17 16 15
19 19 C 1.52997 * 117.49997 * 243.62413 * 18 17 16
20 20 C 1.53001 * 60.00398 * 252.51241 * 19 18 17
21 21 C 1.38298 * 120.13988 * 0.26055 * 13 12 11
22 22 C 1.38103 * 120.07051 * 359.44253 * 21 13 12
23 23 H 0.97000 * 120.00375 * 359.97438 * 1 2 3
24 24 H 1.07997 * 120.03429 * 359.97438 * 11 10 9
25 25 H 1.08000 * 119.96362 * 179.97438 * 12 11 10
26 26 H 1.08998 * 109.47386 * 330.00560 * 14 13 12
27 27 H 1.09003 * 109.47471 * 210.00847 * 14 13 12
28 28 H 1.00903 * 110.99671 * 303.95541 * 15 14 13
29 29 H 1.08999 * 109.47019 * 60.00229 * 17 16 15
30 30 H 1.08993 * 109.47588 * 300.00377 * 17 16 15
31 31 H 1.09004 * 115.54952 * 29.33362 * 18 17 16
32 32 H 1.09006 * 117.49913 * 0.02562 * 19 18 17
33 33 H 1.09003 * 117.49927 * 145.02271 * 19 18 17
34 34 H 1.08997 * 117.50008 * 252.51691 * 20 19 18
35 35 H 1.08997 * 117.50318 * 107.48556 * 20 19 18
36 36 H 1.08005 * 119.96279 * 179.70092 * 21 13 12
37 37 H 1.07990 * 120.03614 * 180.27774 * 22 21 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2495 1.6178 0.0000
4 1 2.4970 2.0466 -1.4000
5 1 1.4470 2.6526 0.7001
6 1 3.5471 1.4402 0.7000
7 6 2.0088 -1.2007 -0.0005
8 1 1.4688 -2.1361 -0.0014
9 8 3.3571 -1.2007 -0.0011
10 6 3.9734 -2.4055 -0.1082
11 6 3.2234 -3.5743 -0.0954
12 6 3.8534 -4.7985 -0.2040
13 6 5.2297 -4.8612 -0.3250
14 6 5.9139 -6.1986 -0.4428
15 7 6.0180 -6.5723 -1.8597
16 8 6.6792 -7.8683 -2.0130
17 6 6.8139 -8.2952 -3.3700
18 6 7.5157 -9.6542 -3.4099
19 6 8.8800 -9.7248 -4.0988
20 6 7.6509 -10.3399 -4.7711
21 6 5.9798 -3.6993 -0.3322
22 6 5.3553 -2.4718 -0.2301
23 1 -0.4851 0.8400 0.0004
24 1 2.1488 -3.5260 0.0003
25 1 3.2708 -5.7078 -0.1937
26 1 5.3335 -6.9519 0.0899
27 1 6.9121 -6.1356 -0.0094
28 1 5.1104 -6.5747 -2.3006
29 1 7.4046 -7.5654 -3.9236
30 1 5.8265 -8.3824 -3.8233
31 1 7.3576 -10.2907 -2.5392
32 1 9.2778 -8.8030 -4.5233
33 1 9.6199 -10.4078 -3.6813
34 1 7.5820 -11.4274 -4.7957
35 1 7.2398 -9.8228 -5.6381
36 1 7.0548 -3.7518 -0.4220
37 1 5.9412 -1.5647 -0.2402
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000688535618.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:53:23
Heat of formation + Delta-G solvation = 5.101462 kcal
Electronic energy + Delta-G solvation = -18341.993776 eV
Core-core repulsion = 15280.134269 eV
Total energy + Delta-G solvation = -3061.859507 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 263.131 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.94564 -39.02752 -38.61242 -37.04244 -34.63038 -33.98528 -31.85711 -30.34184
-27.75636 -27.10546 -25.07852 -23.70236 -23.24545 -22.03967 -21.49658 -19.85736
-19.15404 -18.32358 -16.92105 -16.73833 -16.43343 -16.21238 -15.87714 -15.68151
-15.56523 -15.10415 -14.79571 -14.56264 -14.33708 -14.09500 -13.92886 -13.30120
-13.04651 -12.62776 -12.52179 -12.40691 -12.38056 -12.07026 -11.96961 -11.85548
-11.35445 -11.30204 -10.92157 -10.75388 -9.84996 -9.69827 -9.06142 -8.51226
-6.24160 0.47731 0.54552 1.32013 1.35373 1.52093 1.69348 2.27560
2.75436 2.87444 3.03981 3.14160 3.75452 3.86502 3.95608 3.98835
4.02803 4.14597 4.31548 4.35552 4.44900 4.52568 4.55843 4.71391
4.75675 4.78630 4.82182 4.95989 5.02025 5.21376 5.22531 5.25024
5.33467 5.53570 5.55544 5.72486 5.78675 5.87677 6.19504 6.28019
6.82965 7.56241 8.60135
Molecular weight = 263.13amu
Principal moments of inertia in cm(-1)
A = 0.044522 B = 0.002899 C = 0.002867
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 628.756335 B = 9657.241082 C = 9765.457424
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.922 5.922
2 C 0.010 3.990
3 Si 0.970 3.030
4 H -0.266 1.266
5 H -0.268 1.268
6 H -0.262 1.262
7 C -0.400 4.400
8 H 0.083 0.917
9 O -0.242 6.242
10 C 0.126 3.874
11 C -0.237 4.237
12 C -0.060 4.060
13 C -0.156 4.156
14 C 0.114 3.886
15 N -0.507 5.507
16 O -0.269 6.269
17 C 0.090 3.910
18 C -0.168 4.168
19 C -0.176 4.176
20 C -0.161 4.161
21 C -0.042 4.042
22 C -0.192 4.192
23 H 0.285 0.715
24 H 0.111 0.889
25 H 0.135 0.865
26 H 0.053 0.947
27 H 0.096 0.904
28 H 0.339 0.661
29 H 0.056 0.944
30 H 0.056 0.944
31 H 0.106 0.894
32 H 0.097 0.903
33 H 0.104 0.896
34 H 0.110 0.890
35 H 0.102 0.898
36 H 0.153 0.847
37 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.481 -16.747 -6.436 23.697
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.563 5.563
2 C -0.188 4.188
3 Si 0.793 3.207
4 H -0.191 1.191
5 H -0.192 1.192
6 H -0.186 1.186
7 C -0.477 4.477
8 H 0.100 0.900
9 O -0.150 6.150
10 C 0.077 3.923
11 C -0.256 4.256
12 C -0.079 4.079
13 C -0.157 4.157
14 C -0.014 4.014
15 N -0.178 5.178
16 O -0.278 6.278
17 C 0.013 3.987
18 C -0.188 4.188
19 C -0.213 4.213
20 C -0.198 4.198
21 C -0.061 4.061
22 C -0.211 4.211
23 H 0.095 0.905
24 H 0.128 0.872
25 H 0.153 0.847
26 H 0.071 0.929
27 H 0.114 0.886
28 H 0.155 0.845
29 H 0.074 0.926
30 H 0.075 0.925
31 H 0.124 0.876
32 H 0.116 0.884
33 H 0.122 0.878
34 H 0.128 0.872
35 H 0.121 0.879
36 H 0.171 0.829
37 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 16.040 -16.179 -6.344 23.649
hybrid contribution -1.477 0.231 0.255 1.517
sum 14.563 -15.948 -6.088 22.438
Atomic orbital electron populations
1.69723 1.06918 1.29661 1.49950 1.25287 0.95881 1.02202 0.95458
0.85219 0.78829 0.77390 0.79307 1.19056 1.19241 1.18631 1.20717
0.78056 0.96173 1.52711 0.89991 1.83524 1.21291 1.27470 1.82684
1.19725 0.93230 0.85102 0.94246 1.21250 1.00296 0.93013 1.11083
1.20941 0.94298 0.96393 0.96221 1.19296 0.92752 0.94365 1.09288
1.20720 1.01272 0.91993 0.87410 1.66827 1.26573 1.08227 1.16143
1.90691 1.77560 1.32707 1.26806 1.22024 0.99419 0.93859 0.83397
1.22097 1.01455 0.96971 0.98255 1.23167 0.91087 1.03551 1.03516
1.23084 1.01384 1.00958 0.94409 1.20937 1.00470 0.89863 0.94822
1.20534 0.90555 0.99785 1.10265 0.90528 0.87153 0.84683 0.92869
0.88587 0.84539 0.92559 0.92541 0.87565 0.88430 0.87777 0.87156
0.87940 0.82949 0.85065
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -54.75 13.96 21.61 0.30 -54.45 16
2 C 0.01 0.59 5.49 84.83 0.47 1.06 16
3 Si 0.97 45.08 28.62 68.60 1.96 47.04 16
4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16
5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16
6 H -0.26 -12.13 7.11 99.48 0.71 -11.43 16
7 C -0.40 -23.38 9.95 67.92 0.68 -22.70 16
8 H 0.08 5.00 5.44 -2.91 -0.02 4.99 16
9 O -0.24 -13.02 8.59 -22.78 -0.20 -13.22 16
10 C 0.13 5.80 6.65 22.58 0.15 5.95 16
11 C -0.24 -10.14 9.17 22.39 0.21 -9.94 16
12 C -0.06 -1.99 9.69 22.25 0.22 -1.77 16
13 C -0.16 -4.54 5.40 -19.84 -0.11 -4.65 16
14 C 0.11 2.74 6.35 85.56 0.54 3.29 16
15 N -0.51 -12.30 7.32 -190.01 -1.39 -13.69 16
16 O -0.27 -6.56 11.28 -50.14 -0.57 -7.12 16
17 C 0.09 1.72 6.67 71.98 0.48 2.20 16
18 C -0.17 -2.67 6.06 -10.79 -0.07 -2.73 16
19 C -0.18 -2.30 10.18 30.59 0.31 -1.99 16
20 C -0.16 -1.87 10.25 30.60 0.31 -1.56 16
21 C -0.04 -1.28 9.69 22.25 0.22 -1.07 16
22 C -0.19 -7.17 9.99 22.39 0.22 -6.95 16
23 H 0.29 15.51 8.31 -92.71 -0.77 14.74 16
24 H 0.11 5.20 5.64 -2.91 -0.02 5.19 16
25 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16
26 H 0.05 1.21 8.08 -2.39 -0.02 1.19 16
27 H 0.10 2.16 8.08 -2.39 -0.02 2.14 16
28 H 0.34 7.72 8.91 -89.69 -0.80 6.92 16
29 H 0.06 1.08 7.87 -2.39 -0.02 1.06 16
30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
31 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16
32 H 0.10 1.26 8.03 -2.38 -0.02 1.24 16
33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16
34 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16
35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16
36 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16
37 H 0.13 4.51 8.06 -2.92 -0.02 4.49 16
Total: -1.00 -64.71 321.87 4.02 -60.69
By element:
Atomic # 1 Polarization: 21.33 SS G_CDS: 0.27 Total: 21.61 kcal
Atomic # 6 Polarization: -44.48 SS G_CDS: 3.63 Total: -40.86 kcal
Atomic # 7 Polarization: -67.06 SS G_CDS: -1.09 Total: -68.15 kcal
Atomic # 8 Polarization: -19.58 SS G_CDS: -0.76 Total: -20.34 kcal
Atomic # 14 Polarization: 45.08 SS G_CDS: 1.96 Total: 47.04 kcal
Total: -64.71 4.02 -60.69 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000688535618.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.794 kcal
(2) G-P(sol) polarization free energy of solvation -64.709 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.085 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.692 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.101 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds