Wall clock time and date at job start Mon Mar 30 2020 06:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86802 * 120.00032 * 2 1 4 4 H 1.48504 * 109.46804 * 270.00207 * 3 2 1 5 5 H 1.48505 * 109.46916 * 30.00113 * 3 2 1 6 6 H 1.48490 * 109.47059 * 150.00308 * 3 2 1 7 7 C 1.38652 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99817 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00286 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00307 * 185.05811 * 9 7 2 11 11 C 1.38904 * 120.06836 * 354.48539 * 10 9 7 12 12 C 1.38077 * 119.93083 * 179.97438 * 11 10 9 13 13 C 1.38319 * 120.06796 * 359.74411 * 12 11 10 14 14 C 1.38275 * 120.14113 * 0.51581 * 13 12 11 15 15 C 1.50698 * 119.96661 * 179.76291 * 14 13 12 16 16 N 1.46903 * 109.47212 * 269.72012 * 15 14 13 17 17 O 1.46297 * 110.99974 * 179.97438 * 16 15 14 18 18 C 1.42906 * 113.99718 * 180.02562 * 17 16 15 19 19 C 1.53006 * 109.46760 * 180.02562 * 18 17 16 20 20 C 1.52995 * 117.49681 * 243.62213 * 19 18 17 21 21 C 1.53000 * 117.49691 * 174.99901 * 19 18 17 22 22 C 1.38121 * 120.06570 * 359.48525 * 14 13 12 23 23 H 0.97001 * 120.00050 * 359.97438 * 1 2 3 24 24 H 1.08005 * 120.03058 * 0.02562 * 11 10 9 25 25 H 1.08006 * 119.96286 * 180.02562 * 12 11 10 26 26 H 1.08005 * 119.93053 * 180.27601 * 13 12 11 27 27 H 1.08997 * 109.47308 * 29.72274 * 15 14 13 28 28 H 1.09003 * 109.47279 * 149.71988 * 15 14 13 29 29 H 1.00900 * 110.99629 * 303.95833 * 16 15 14 30 30 H 1.09000 * 109.47222 * 299.99701 * 18 17 16 31 31 H 1.09000 * 109.47171 * 60.00374 * 18 17 16 32 32 H 1.09001 * 115.55152 * 29.33533 * 19 18 17 33 33 H 1.08995 * 117.50384 * 0.02562 * 20 19 18 34 34 H 1.09001 * 117.49887 * 145.02710 * 20 19 18 35 35 H 1.08998 * 117.50119 * 214.97873 * 21 19 18 36 36 H 1.09010 * 117.49718 * 0.02562 * 21 19 18 37 37 H 1.08004 * 120.03312 * 180.23431 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4402 0.6999 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4574 -3.4395 0.0925 12 6 4.2025 -4.5969 0.2012 13 6 3.5687 -5.8197 0.3282 14 6 2.1876 -5.8885 0.3361 15 6 1.5012 -7.2234 0.4693 16 7 1.2710 -7.7912 -0.8659 17 8 0.6052 -9.0907 -0.7754 18 6 0.3502 -9.7025 -2.0414 19 6 -0.3454 -11.0482 -1.8266 20 6 0.3986 -12.3075 -2.2753 21 6 -0.8105 -11.8094 -3.0696 22 6 1.4367 -4.7343 0.2278 23 1 -0.4850 0.8401 0.0004 24 1 3.9528 -2.4844 -0.0016 25 1 5.2813 -4.5468 0.1915 26 1 4.1537 -6.7232 0.4175 27 1 2.1305 -7.8995 1.0481 28 1 0.5460 -7.0917 0.9777 29 1 0.7439 -7.1538 -1.4438 30 1 -0.2919 -9.0528 -2.6361 31 1 1.2930 -9.8599 -2.5653 32 1 -0.9636 -11.1204 -0.9317 33 1 1.3837 -12.1775 -2.7231 34 1 0.2701 -13.2086 -1.6755 35 1 -1.7343 -12.3827 -2.9924 36 1 -0.6205 -11.3516 -4.0405 37 1 0.3580 -4.7883 0.2378 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688538378.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:08 Heat of formation + Delta-G solvation = 20.742995 kcal Electronic energy + Delta-G solvation = -18412.509751 eV Core-core repulsion = 15351.328512 eV Total energy + Delta-G solvation = -3061.181239 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.13724 -38.11303 -36.96149 -35.98532 -33.14314 -32.27759 -29.76686 -28.84617 -26.63895 -25.41765 -24.14018 -22.65079 -21.64144 -20.97410 -20.56404 -17.84549 -17.32520 -16.78112 -16.01075 -15.45832 -15.09162 -14.97380 -14.52028 -14.38139 -14.04193 -13.71674 -13.55778 -13.19280 -12.56614 -12.54785 -12.08482 -11.83576 -11.67703 -11.41016 -11.30090 -11.03007 -10.86955 -10.80084 -10.69526 -10.64134 -10.45492 -9.96827 -9.38712 -8.87307 -8.65920 -8.14926 -7.28533 -6.47448 -4.06982 1.89773 2.31514 2.80242 3.11533 3.12276 3.17024 3.53655 3.94283 4.45175 4.57156 4.62780 4.67095 4.98298 5.07092 5.13760 5.17148 5.34200 5.39313 5.43456 5.52481 5.59005 5.60943 5.71476 5.82734 5.85986 5.92098 6.01529 6.13896 6.27315 6.58589 6.62323 6.85457 7.02439 7.21206 7.32337 7.33107 7.38319 7.75304 7.97040 8.98193 9.67334 10.70590 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.034882 B = 0.003101 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.510198 B = 9028.489991 C = 9565.685822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.152 3.848 11 C -0.226 4.226 12 C -0.077 4.077 13 C -0.185 4.185 14 C -0.051 4.051 15 C 0.099 3.901 16 N -0.498 5.498 17 O -0.257 6.257 18 C 0.093 3.907 19 C -0.151 4.151 20 C -0.176 4.176 21 C -0.173 4.173 22 C -0.182 4.182 23 H 0.270 0.730 24 H 0.128 0.872 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.089 0.911 28 H 0.049 0.951 29 H 0.337 0.663 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.861 -16.637 -3.251 17.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.082 6.082 10 C 0.098 3.902 11 C -0.246 4.246 12 C -0.095 4.095 13 C -0.205 4.205 14 C -0.052 4.052 15 C -0.029 4.029 16 N -0.169 5.169 17 O -0.265 6.265 18 C 0.015 3.985 19 C -0.171 4.171 20 C -0.213 4.213 21 C -0.211 4.211 22 C -0.202 4.202 23 H 0.080 0.920 24 H 0.145 0.855 25 H 0.128 0.872 26 H 0.127 0.873 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.153 0.847 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.129 0.871 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.990 -16.799 -3.117 17.201 hybrid contribution -0.418 1.293 0.027 1.359 sum 1.572 -15.506 -3.091 15.889 Atomic orbital electron populations 1.70037 1.05972 1.27698 1.46105 1.25290 0.95846 0.98840 0.96521 0.85709 0.78926 0.80055 0.78729 1.19861 1.20242 1.19180 1.21324 0.91802 0.80780 1.52972 0.89050 1.83976 1.34258 1.11392 1.78565 1.19273 0.90267 0.87979 0.92643 1.21241 0.93820 0.99106 1.10387 1.20762 0.98600 0.92266 0.97882 1.20463 0.93292 0.97101 1.09604 1.18929 0.93540 0.91638 1.01088 1.20929 0.99569 0.92995 0.89418 1.66859 1.39861 0.95975 1.14191 1.90712 1.81686 1.26967 1.27089 1.21884 0.98402 0.91616 0.86617 1.22116 1.03531 0.91715 0.99724 1.23075 0.96791 0.97816 1.03626 1.22982 0.99001 1.03446 0.95639 1.20054 0.99195 0.90092 1.10854 0.92003 0.85464 0.87225 0.87265 0.89296 0.93280 0.84668 0.93075 0.92383 0.87062 0.88473 0.88679 0.88437 0.88545 0.86709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.19 13.67 55.48 0.76 -24.43 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.39 -10.88 9.49 30.89 0.29 -10.59 16 8 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 9 O -0.18 -5.04 9.76 0.06 0.00 -5.04 16 10 C 0.15 3.63 6.65 -39.11 -0.26 3.37 16 11 C -0.23 -4.86 9.17 -39.39 -0.36 -5.22 16 12 C -0.08 -1.40 10.04 -39.61 -0.40 -1.80 16 13 C -0.19 -3.22 9.70 -39.54 -0.38 -3.60 16 14 C -0.05 -0.91 5.39 -104.65 -0.56 -1.47 16 15 C 0.10 1.52 6.35 -4.98 -0.03 1.48 16 16 N -0.50 -7.39 7.32 -11.41 -0.08 -7.47 16 17 O -0.26 -3.69 11.28 -13.92 -0.16 -3.85 16 18 C 0.09 1.05 6.67 37.16 0.25 1.30 16 19 C -0.15 -1.46 6.06 -90.62 -0.55 -2.00 16 20 C -0.18 -1.43 10.18 -26.73 -0.27 -1.70 16 21 C -0.17 -1.32 10.25 -26.73 -0.27 -1.60 16 22 C -0.18 -3.78 9.65 -39.40 -0.38 -4.16 16 23 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 24 H 0.13 2.73 5.64 -52.48 -0.30 2.43 16 25 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 26 H 0.11 1.66 8.06 -52.48 -0.42 1.23 16 27 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 28 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 29 H 0.34 4.82 8.91 -39.29 -0.35 4.47 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.65 7.88 -51.93 -0.41 0.24 16 32 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.10 0.77 8.03 -51.93 -0.42 0.35 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.11 2.32 8.06 -52.48 -0.42 1.89 16 LS Contribution 323.00 15.07 4.87 4.87 Total: -1.00 -30.29 323.00 -7.77 -38.06 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -5.10 Total: 7.53 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: -3.03 Total: -25.01 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.68 Total: -31.91 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.16 Total: -8.89 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.29 -7.77 -38.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688538378.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.805 kcal (2) G-P(sol) polarization free energy of solvation -30.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds