Wall clock time and date at job start Mon Mar 30 2020 06:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86802 * 120.00032 * 2 1 4 4 H 1.48504 * 109.46804 * 270.00207 * 3 2 1 5 5 H 1.48505 * 109.46916 * 30.00113 * 3 2 1 6 6 H 1.48490 * 109.47059 * 150.00308 * 3 2 1 7 7 C 1.38652 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99817 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00286 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00307 * 185.05811 * 9 7 2 11 11 C 1.38904 * 120.06836 * 354.48539 * 10 9 7 12 12 C 1.38077 * 119.93083 * 179.97438 * 11 10 9 13 13 C 1.38319 * 120.06796 * 359.74411 * 12 11 10 14 14 C 1.38275 * 120.14113 * 0.51581 * 13 12 11 15 15 C 1.50698 * 119.96661 * 179.76291 * 14 13 12 16 16 N 1.46903 * 109.47212 * 269.72012 * 15 14 13 17 17 O 1.46297 * 110.99974 * 179.97438 * 16 15 14 18 18 C 1.42906 * 113.99718 * 180.02562 * 17 16 15 19 19 C 1.53006 * 109.46760 * 180.02562 * 18 17 16 20 20 C 1.52995 * 117.49681 * 243.62213 * 19 18 17 21 21 C 1.53000 * 117.49691 * 174.99901 * 19 18 17 22 22 C 1.38121 * 120.06570 * 359.48525 * 14 13 12 23 23 H 0.97001 * 120.00050 * 359.97438 * 1 2 3 24 24 H 1.08005 * 120.03058 * 0.02562 * 11 10 9 25 25 H 1.08006 * 119.96286 * 180.02562 * 12 11 10 26 26 H 1.08005 * 119.93053 * 180.27601 * 13 12 11 27 27 H 1.08997 * 109.47308 * 29.72274 * 15 14 13 28 28 H 1.09003 * 109.47279 * 149.71988 * 15 14 13 29 29 H 1.00900 * 110.99629 * 303.95833 * 16 15 14 30 30 H 1.09000 * 109.47222 * 299.99701 * 18 17 16 31 31 H 1.09000 * 109.47171 * 60.00374 * 18 17 16 32 32 H 1.09001 * 115.55152 * 29.33533 * 19 18 17 33 33 H 1.08995 * 117.50384 * 0.02562 * 20 19 18 34 34 H 1.09001 * 117.49887 * 145.02710 * 20 19 18 35 35 H 1.08998 * 117.50119 * 214.97873 * 21 19 18 36 36 H 1.09010 * 117.49718 * 0.02562 * 21 19 18 37 37 H 1.08004 * 120.03312 * 180.23431 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4402 0.6999 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4574 -3.4395 0.0925 12 6 4.2025 -4.5969 0.2012 13 6 3.5687 -5.8197 0.3282 14 6 2.1876 -5.8885 0.3361 15 6 1.5012 -7.2234 0.4693 16 7 1.2710 -7.7912 -0.8659 17 8 0.6052 -9.0907 -0.7754 18 6 0.3502 -9.7025 -2.0414 19 6 -0.3454 -11.0482 -1.8266 20 6 0.3986 -12.3075 -2.2753 21 6 -0.8105 -11.8094 -3.0696 22 6 1.4367 -4.7343 0.2278 23 1 -0.4850 0.8401 0.0004 24 1 3.9528 -2.4844 -0.0016 25 1 5.2813 -4.5468 0.1915 26 1 4.1537 -6.7232 0.4175 27 1 2.1305 -7.8995 1.0481 28 1 0.5460 -7.0917 0.9777 29 1 0.7439 -7.1538 -1.4438 30 1 -0.2919 -9.0528 -2.6361 31 1 1.2930 -9.8599 -2.5653 32 1 -0.9636 -11.1204 -0.9317 33 1 1.3837 -12.1775 -2.7231 34 1 0.2701 -13.2086 -1.6755 35 1 -1.7343 -12.3827 -2.9924 36 1 -0.6205 -11.3516 -4.0405 37 1 0.3580 -4.7883 0.2378 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688538378.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:08 Heat of formation + Delta-G solvation = 2.449965 kcal Electronic energy + Delta-G solvation = -18413.302996 eV Core-core repulsion = 15351.328512 eV Total energy + Delta-G solvation = -3061.974484 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.83908 -39.00601 -38.50848 -37.08369 -34.55282 -34.15721 -31.27729 -30.39166 -27.67991 -27.28407 -25.51653 -23.25246 -23.23226 -22.37648 -21.56005 -19.57024 -18.93175 -18.14358 -16.94762 -16.79646 -16.59752 -16.15021 -16.07509 -15.81829 -15.49552 -15.16867 -14.79887 -14.42651 -14.12119 -14.08065 -13.58142 -13.25470 -12.96453 -12.54069 -12.47521 -12.41104 -12.27202 -12.16525 -12.06901 -11.91696 -11.37239 -11.21396 -10.81648 -10.77553 -9.92824 -9.60088 -9.02577 -8.47658 -6.16273 0.37218 0.71127 1.35447 1.44012 1.52982 1.65638 2.17472 2.81475 2.87562 3.14618 3.43121 3.70980 3.82567 3.94060 4.01393 4.07037 4.26616 4.28617 4.36866 4.41924 4.51425 4.56118 4.69684 4.70447 4.76244 4.78902 5.00273 5.01336 5.11778 5.20002 5.24665 5.25392 5.45880 5.62784 5.70368 5.74723 6.01183 6.17394 6.20807 6.97214 7.77239 8.75621 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.034882 B = 0.003101 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.510198 B = 9028.489991 C = 9565.685822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.413 4.413 8 H 0.103 0.897 9 O -0.232 6.232 10 C 0.113 3.887 11 C -0.237 4.237 12 C -0.070 4.070 13 C -0.165 4.165 14 C -0.041 4.041 15 C 0.105 3.895 16 N -0.502 5.502 17 O -0.267 6.267 18 C 0.089 3.911 19 C -0.170 4.170 20 C -0.173 4.173 21 C -0.161 4.161 22 C -0.192 4.192 23 H 0.272 0.728 24 H 0.122 0.878 25 H 0.150 0.850 26 H 0.147 0.853 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.337 0.663 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.013 -18.654 -3.445 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.120 0.880 9 O -0.139 6.139 10 C 0.063 3.937 11 C -0.256 4.256 12 C -0.088 4.088 13 C -0.184 4.184 14 C -0.042 4.042 15 C -0.024 4.024 16 N -0.172 5.172 17 O -0.276 6.276 18 C 0.012 3.988 19 C -0.190 4.190 20 C -0.210 4.210 21 C -0.198 4.198 22 C -0.212 4.212 23 H 0.081 0.919 24 H 0.139 0.861 25 H 0.167 0.833 26 H 0.165 0.835 27 H 0.125 0.875 28 H 0.067 0.933 29 H 0.153 0.847 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.176 -18.872 -3.314 19.610 hybrid contribution -1.007 1.534 0.078 1.837 sum 3.168 -17.337 -3.236 17.919 Atomic orbital electron populations 1.70185 1.08064 1.28799 1.48973 1.26595 0.96841 1.02770 0.95866 0.84583 0.77829 0.74523 0.79264 1.18784 1.19704 1.17559 1.21834 0.92571 0.81368 1.53162 0.87952 1.83940 1.35913 1.12548 1.81521 1.19816 0.91645 0.87803 0.94425 1.21379 0.93037 1.00402 1.10796 1.21182 1.00478 0.91139 0.96034 1.20986 0.93164 0.98211 1.06025 1.19187 0.94034 0.91762 0.99228 1.20868 0.99728 0.91801 0.89998 1.66792 1.40317 0.96425 1.13630 1.90696 1.81629 1.26334 1.28897 1.22062 0.98772 0.92376 0.85597 1.22087 1.04658 0.91448 1.00794 1.23169 0.97102 0.97229 1.03493 1.23090 0.99400 1.02344 0.94998 1.20229 0.99369 0.90334 1.11221 0.91859 0.86070 0.83276 0.83493 0.87526 0.93338 0.84683 0.92766 0.92179 0.87681 0.88252 0.87683 0.87153 0.87909 0.87364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.61 13.67 21.61 0.30 -56.31 16 2 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 3 Si 1.02 42.61 29.55 68.60 2.03 44.64 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 7 C -0.41 -23.94 9.49 67.92 0.64 -23.29 16 8 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 9 O -0.23 -13.94 9.76 -22.71 -0.22 -14.16 16 10 C 0.11 5.59 6.65 22.58 0.15 5.74 16 11 C -0.24 -10.11 9.17 22.39 0.21 -9.91 16 12 C -0.07 -2.35 10.04 22.25 0.22 -2.12 16 13 C -0.16 -5.10 9.70 22.30 0.22 -4.88 16 14 C -0.04 -1.39 5.39 -19.88 -0.11 -1.50 16 15 C 0.10 2.96 6.35 85.56 0.54 3.50 16 16 N -0.50 -13.98 7.32 -190.00 -1.39 -15.37 16 17 O -0.27 -7.25 11.28 -50.15 -0.57 -7.81 16 18 C 0.09 1.90 6.67 71.98 0.48 2.38 16 19 C -0.17 -3.01 6.06 -10.79 -0.07 -3.08 16 20 C -0.17 -2.43 10.18 30.59 0.31 -2.12 16 21 C -0.16 -2.10 10.25 30.60 0.31 -1.79 16 22 C -0.19 -8.10 9.65 22.39 0.22 -7.88 16 23 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 24 H 0.12 5.23 5.64 -2.91 -0.02 5.22 16 25 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 26 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 27 H 0.11 2.69 8.08 -2.39 -0.02 2.67 16 28 H 0.05 1.39 8.08 -2.39 -0.02 1.37 16 29 H 0.34 9.35 8.91 -89.69 -0.80 8.55 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.24 7.88 -2.39 -0.02 1.22 16 32 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.10 1.35 8.03 -2.39 -0.02 1.33 16 34 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -69.07 323.00 4.02 -65.06 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 0.28 Total: 29.77 kcal Atomic # 6 Polarization: -49.41 SS G_CDS: 3.60 Total: -45.81 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -1.09 Total: -71.68 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.79 Total: -21.97 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -69.07 4.02 -65.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688538378.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.506 kcal (2) G-P(sol) polarization free energy of solvation -69.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds