Wall clock time and date at job start Mon Mar 30 2020 07:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38627 * 119.81929 * 2 1 4 4 C 1.37947 * 120.43655 * 180.02562 * 3 2 1 5 5 C 1.38960 * 120.06725 * 359.71483 * 4 3 2 6 6 N 1.38834 * 120.18011 * 180.28360 * 5 4 3 7 7 C 1.40409 * 119.64320 * 0.57953 * 5 4 3 8 8 C 1.47285 * 120.21842 * 179.70055 * 7 5 4 9 9 O 1.21528 * 119.99724 * 353.83465 * 8 7 5 10 10 O 1.34763 * 120.00284 * 173.83277 * 8 7 5 11 11 C 1.45194 * 117.00522 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.46664 * 330.00141 * 11 10 8 13 13 C 1.53002 * 109.47170 * 89.99556 * 11 10 8 14 14 C 1.52997 * 109.47448 * 209.99913 * 11 10 8 15 15 C 1.50706 * 109.46791 * 64.99744 * 14 11 10 16 16 H 1.07998 * 120.00202 * 0.02562 * 15 14 11 17 17 C 1.37878 * 119.99667 * 179.97438 * 15 14 11 18 18 N 1.31517 * 120.00214 * 359.73019 * 17 15 14 19 19 Si 1.86797 * 120.00006 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47260 * 269.73107 * 19 17 15 21 21 H 1.48502 * 109.47005 * 29.73104 * 19 17 15 22 22 H 1.48502 * 109.47271 * 149.72898 * 19 17 15 23 23 C 1.37724 * 119.81854 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.46997 * 269.97757 * 1 2 3 25 25 H 1.08994 * 109.47433 * 29.97619 * 1 2 3 26 26 H 1.09003 * 109.47251 * 149.97869 * 1 2 3 27 27 H 1.07999 * 119.78535 * 0.02562 * 3 2 1 28 28 H 1.08005 * 119.96759 * 180.02562 * 4 3 2 29 29 H 0.97004 * 120.00028 * 185.80104 * 6 5 4 30 30 H 0.97003 * 120.00209 * 5.80052 * 6 5 4 31 31 H 1.08995 * 109.47565 * 300.00117 * 13 11 10 32 32 H 1.09003 * 109.46849 * 60.00698 * 13 11 10 33 33 H 1.09002 * 109.47195 * 180.02562 * 13 11 10 34 34 H 1.08994 * 109.47157 * 304.99622 * 14 11 10 35 35 H 1.09001 * 109.47257 * 184.99733 * 14 11 10 36 36 H 0.96996 * 119.99824 * 0.27304 * 18 17 15 37 37 H 1.08001 * 120.03836 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2027 0.0000 4 6 3.5757 1.2176 -0.0005 5 6 4.2848 0.0226 0.0049 6 7 5.6731 0.0348 0.0103 7 6 3.5898 -1.1974 -0.0014 8 6 4.3287 -2.4715 -0.0024 9 8 5.5392 -2.4718 -0.1108 10 8 3.6626 -3.6369 0.1170 11 6 4.4554 -4.8533 0.1088 12 1 5.3496 -4.7000 -0.4954 13 6 4.8620 -5.2067 1.5408 14 6 3.6293 -5.9966 -0.4838 15 6 3.3329 -5.7040 -1.9322 16 1 3.6978 -4.7939 -2.3848 17 6 2.5970 -6.5988 -2.6796 18 7 2.1581 -7.7102 -2.1301 19 14 2.2290 -6.2359 -4.4747 20 1 0.9497 -5.4888 -4.5765 21 1 3.3271 -5.4179 -5.0495 22 1 2.1178 -7.5125 -5.2251 23 6 2.1918 -1.1949 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3634 0.8901 -0.5134 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6499 2.1343 0.0004 28 1 4.1051 2.1590 -0.0001 29 1 6.1658 -0.7969 -0.0708 30 1 6.1504 0.8750 0.0952 31 1 5.4506 -4.3923 1.9629 32 1 3.9678 -5.3600 2.1450 33 1 5.4576 -6.1196 1.5346 34 1 2.6933 -6.0917 0.0666 35 1 4.1910 -6.9277 -0.4087 36 1 2.3488 -7.8984 -1.1979 37 1 1.6495 -2.1289 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695810351.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:49 Heat of formation + Delta-G solvation = -101.246123 kcal Electronic energy + Delta-G solvation = -19711.964737 eV Core-core repulsion = 16645.493653 eV Total energy + Delta-G solvation = -3066.471084 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.77361 -40.06967 -37.99919 -36.04954 -35.62644 -33.59445 -32.13009 -31.67224 -29.07495 -26.80291 -25.72204 -25.07477 -23.45028 -21.99192 -21.44710 -19.11721 -18.89342 -18.10001 -17.72118 -17.40085 -17.01745 -15.74501 -15.44494 -15.30446 -15.18197 -14.76421 -14.68935 -14.62408 -14.53924 -13.72969 -13.50579 -13.35848 -13.20298 -13.01689 -12.86907 -12.75630 -12.55190 -12.16041 -11.99420 -11.75297 -11.62550 -11.33164 -11.28404 -10.70455 -10.59316 -10.03791 -8.73046 -8.48856 -6.42329 -0.18817 0.58923 1.47823 1.53810 1.56680 1.75273 1.78508 2.51463 2.84422 2.94158 3.11809 3.64477 3.86658 3.88421 4.05093 4.06343 4.24504 4.36206 4.41307 4.53220 4.66655 4.78588 4.82352 4.93405 4.95698 5.02622 5.06104 5.12418 5.19601 5.26118 5.35834 5.54800 5.70360 5.88875 5.93447 6.10366 6.43424 6.52621 6.77001 6.95250 7.35219 8.68713 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.016988 B = 0.006022 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.834860 B = 4648.257796 C = 5401.137868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.168 4.168 3 C -0.023 4.023 4 C -0.208 4.208 5 C 0.269 3.731 6 N -0.854 5.854 7 C -0.244 4.244 8 C 0.508 3.492 9 O -0.552 6.552 10 O -0.344 6.344 11 C 0.103 3.897 12 H 0.058 0.942 13 C -0.156 4.156 14 C 0.014 3.986 15 C -0.611 4.611 16 H 0.034 0.966 17 C -0.031 4.031 18 N -0.932 5.932 19 Si 1.114 2.886 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.275 1.275 23 C -0.030 4.030 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.167 0.833 28 H 0.163 0.837 29 H 0.408 0.592 30 H 0.409 0.591 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.005 0.995 35 H 0.024 0.976 36 H 0.258 0.742 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.657 20.214 6.232 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.170 4.170 3 C -0.041 4.041 4 C -0.230 4.230 5 C 0.156 3.844 6 N -0.401 5.401 7 C -0.251 4.251 8 C 0.358 3.642 9 O -0.446 6.446 10 O -0.259 6.259 11 C 0.048 3.952 12 H 0.077 0.923 13 C -0.213 4.213 14 C -0.023 4.023 15 C -0.649 4.649 16 H 0.053 0.947 17 C -0.229 4.229 18 N -0.569 5.569 19 Si 0.935 3.065 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.200 1.200 23 C -0.049 4.049 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.073 0.927 27 H 0.184 0.816 28 H 0.181 0.819 29 H 0.247 0.753 30 H 0.240 0.760 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.024 0.976 35 H 0.042 0.958 36 H 0.068 0.932 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.284 19.494 4.878 20.097 hybrid contribution 1.497 -0.185 1.460 2.099 sum 1.781 19.309 6.338 20.400 Atomic orbital electron populations 1.20709 0.89214 1.03269 1.02845 1.19925 0.97667 0.92131 1.07241 1.21447 0.93322 0.98334 0.91046 1.20960 0.94866 0.95848 1.11327 1.17983 0.85174 0.92250 0.88949 1.43389 1.03150 1.14306 1.79248 1.18669 0.94514 0.88423 1.23471 1.21611 0.85809 0.85398 0.71377 1.90358 1.16220 1.87377 1.50665 1.86626 1.42021 1.15048 1.82247 1.22742 0.93475 0.81402 0.97539 0.92338 1.22150 1.02129 1.02604 0.94438 1.19297 0.94837 0.92473 0.95722 1.22244 1.37892 1.07677 0.97053 0.94740 1.27276 0.93109 0.92633 1.09878 1.70889 1.45514 1.25543 1.14961 0.82980 0.77176 0.76318 0.70035 1.19512 1.20305 1.20010 1.21194 0.91695 0.99304 0.92682 0.90629 0.89472 0.92736 0.81557 0.81949 0.75255 0.76013 0.92075 0.91399 0.89555 0.97625 0.95809 0.93231 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.91 10.00 71.24 0.71 -1.20 16 2 C -0.17 -3.98 5.87 -19.89 -0.12 -4.10 16 3 C -0.02 -0.42 9.67 22.29 0.22 -0.20 16 4 C -0.21 -4.10 9.88 22.37 0.22 -3.88 16 5 C 0.27 7.42 6.76 38.74 0.26 7.68 16 6 N -0.85 -21.21 8.93 -50.93 -0.45 -21.67 16 7 C -0.24 -8.51 5.89 -19.99 -0.12 -8.63 16 8 C 0.51 21.29 7.85 70.20 0.55 21.84 16 9 O -0.55 -23.46 12.91 19.74 0.25 -23.21 16 10 O -0.34 -15.93 8.91 -56.74 -0.51 -16.44 16 11 C 0.10 4.78 2.51 30.59 0.08 4.85 16 12 H 0.06 2.88 7.16 -2.39 -0.02 2.86 16 13 C -0.16 -5.73 9.55 71.98 0.69 -5.05 16 14 C 0.01 0.73 4.00 29.85 0.12 0.85 16 15 C -0.61 -36.64 8.89 25.60 0.23 -36.41 16 16 H 0.03 2.11 7.74 -2.91 -0.02 2.09 16 17 C -0.03 -1.84 5.46 84.65 0.46 -1.38 16 18 N -0.93 -58.19 13.65 21.45 0.29 -57.89 16 19 Si 1.11 52.35 29.90 68.60 2.05 54.40 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 C -0.03 -0.96 9.25 22.53 0.21 -0.75 16 24 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.09 1.16 8.08 -2.39 -0.02 1.14 16 26 H 0.05 1.14 8.08 -2.39 -0.02 1.12 16 27 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 28 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 29 H 0.41 12.28 5.34 -94.51 -0.51 11.77 16 30 H 0.41 6.80 8.84 -92.71 -0.82 5.98 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.01 0.31 8.01 -2.39 -0.02 0.29 16 35 H 0.02 1.30 8.00 -2.39 -0.02 1.28 16 36 H 0.26 16.15 7.22 -92.71 -0.67 15.48 16 37 H 0.12 4.13 7.62 -2.91 -0.02 4.11 16 Total: -1.00 -72.67 316.00 5.01 -67.65 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -0.14 Total: 23.53 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 3.51 Total: -26.37 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -0.16 Total: -79.56 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -0.25 Total: -39.65 kcal Atomic # 14 Polarization: 52.35 SS G_CDS: 2.05 Total: 54.40 kcal Total: -72.67 5.01 -67.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810351.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.591 kcal (2) G-P(sol) polarization free energy of solvation -72.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds