Wall clock time and date at job start Mon Mar 30 2020 07:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38250 * 119.88503 * 2 1 4 4 C 1.38995 * 120.23259 * 180.02562 * 3 2 1 5 5 N 1.39708 * 119.99983 * 180.02562 * 4 3 2 6 6 C 1.38657 * 119.99628 * 0.02562 * 4 3 2 7 7 C 1.39508 * 119.77095 * 359.97438 * 6 4 3 8 8 C 1.47740 * 120.12003 * 180.02562 * 7 6 4 9 9 O 1.21465 * 120.00450 * 179.97438 * 8 7 6 10 10 O 1.34708 * 119.99909 * 359.97438 * 8 7 6 11 11 C 1.45194 * 117.00361 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46985 * 329.99434 * 11 10 8 13 13 C 1.53001 * 109.47328 * 89.99866 * 11 10 8 14 14 C 1.53007 * 109.47218 * 209.99848 * 11 10 8 15 15 C 1.50699 * 109.46981 * 64.99663 * 14 11 10 16 16 H 1.07994 * 120.00391 * 0.02562 * 15 14 11 17 17 C 1.37877 * 119.99659 * 180.02562 * 15 14 11 18 18 N 1.31508 * 120.00309 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99682 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47268 * 90.00136 * 19 17 15 21 21 H 1.48502 * 109.46985 * 209.99963 * 19 17 15 22 22 H 1.48498 * 109.47311 * 329.99828 * 19 17 15 23 23 C 1.37979 * 119.88443 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.46530 * 269.96774 * 1 2 3 25 25 H 1.08992 * 109.47341 * 29.96860 * 1 2 3 26 26 H 1.08995 * 109.46950 * 149.97360 * 1 2 3 27 27 H 1.08002 * 119.88392 * 0.02562 * 3 2 1 28 28 H 0.97004 * 119.99928 * 179.97438 * 5 4 3 29 29 H 0.96994 * 120.00575 * 359.97438 * 5 4 3 30 30 H 1.08002 * 120.11785 * 180.02562 * 6 4 3 31 31 H 1.08996 * 109.47005 * 60.00009 * 13 11 10 32 32 H 1.09004 * 109.46974 * 180.02562 * 13 11 10 33 33 H 1.09000 * 109.47023 * 299.99602 * 13 11 10 34 34 H 1.09004 * 109.47192 * 184.99756 * 14 11 10 35 35 H 1.09004 * 109.47053 * 304.99649 * 14 11 10 36 36 H 0.97006 * 120.00426 * 179.97438 * 18 17 15 37 37 H 1.08000 * 119.99477 * 0.25362 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1987 0.0000 4 6 3.5858 1.2071 -0.0005 5 7 4.2770 2.4212 0.0000 6 6 4.2862 0.0105 -0.0016 7 6 3.5911 -1.1991 -0.0016 8 6 4.3297 -2.4786 -0.0022 9 8 3.7224 -3.5305 -0.0017 10 8 5.6768 -2.4787 -0.0032 11 6 6.3359 -3.7724 -0.0043 12 1 5.7083 -4.5004 0.5098 13 6 6.5664 -4.2263 -1.4472 14 6 7.6812 -3.6600 0.7159 15 6 7.4476 -3.3328 2.1683 16 1 6.4404 -3.2170 2.5405 17 6 8.5197 -3.1812 3.0218 18 7 9.7461 -3.3227 2.5687 19 14 8.2301 -2.7762 4.8223 20 1 8.1077 -4.0357 5.5995 21 1 9.3734 -1.9834 5.3414 22 1 6.9790 -1.9877 4.9573 23 6 2.1945 -1.1963 -0.0005 24 1 -0.3632 -0.0006 1.0277 25 1 -0.3633 0.8902 -0.5133 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6521 2.1318 0.0004 28 1 5.2470 2.4271 0.0000 29 1 3.7870 3.2583 0.0004 30 1 5.3663 0.0147 -0.0016 31 1 7.1940 -3.4983 -1.9612 32 1 7.0608 -5.1977 -1.4479 33 1 5.6080 -4.3064 -1.9603 34 1 8.2152 -4.6071 0.6382 35 1 8.2745 -2.8696 0.2562 36 1 10.5005 -3.2157 3.1692 37 1 1.6525 -2.1305 -0.0051 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:44 Heat of formation + Delta-G solvation = -101.595738 kcal Electronic energy + Delta-G solvation = -19398.613458 eV Core-core repulsion = 16332.127214 eV Total energy + Delta-G solvation = -3066.486244 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.60381 -40.14528 -37.83799 -35.73866 -35.44919 -33.86401 -33.02729 -29.89152 -29.40803 -27.80405 -25.99769 -25.09830 -22.41525 -22.26290 -21.29952 -18.98629 -18.56732 -17.99088 -17.46032 -16.98145 -16.89705 -16.62906 -16.16189 -15.31304 -14.95028 -14.79083 -14.57017 -14.14769 -14.09043 -13.84044 -13.40475 -13.37627 -13.20366 -12.99561 -12.69202 -12.67040 -12.54736 -12.38533 -12.28802 -11.75871 -11.57162 -11.46968 -11.39878 -10.99759 -10.61224 -9.78907 -8.50957 -8.24092 -6.33601 -0.26381 0.53353 1.36227 1.36993 1.48602 1.58957 1.79592 2.37847 2.84669 2.95581 3.09503 3.64576 3.87029 4.02345 4.16213 4.22193 4.31280 4.38528 4.44661 4.45047 4.70114 4.82252 4.90724 4.91256 4.93970 5.09114 5.17936 5.24470 5.31598 5.33280 5.42528 5.61292 5.68487 5.74015 5.82338 6.15196 6.53558 6.75283 6.79603 7.01836 7.33816 8.87413 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017762 B = 0.005433 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.005235 B = 5152.199686 C = 5785.598793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.049 4.049 3 C -0.161 4.161 4 C 0.209 3.791 5 N -0.865 5.865 6 C -0.163 4.163 7 C -0.091 4.091 8 C 0.497 3.503 9 O -0.542 6.542 10 O -0.341 6.341 11 C 0.095 3.905 12 H 0.058 0.942 13 C -0.156 4.156 14 C 0.031 3.969 15 C -0.537 4.537 16 H 0.042 0.958 17 C 0.011 3.989 18 N -0.925 5.925 19 Si 0.957 3.043 20 H -0.271 1.271 21 H -0.274 1.274 22 H -0.272 1.272 23 C -0.132 4.132 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.161 0.839 28 H 0.405 0.595 29 H 0.413 0.587 30 H 0.125 0.875 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.029 0.971 35 H 0.011 0.989 36 H 0.266 0.734 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.715 12.449 -6.830 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.050 4.050 3 C -0.184 4.184 4 C 0.103 3.897 5 N -0.405 5.405 6 C -0.186 4.186 7 C -0.093 4.093 8 C 0.344 3.656 9 O -0.435 6.435 10 O -0.257 6.257 11 C 0.040 3.960 12 H 0.076 0.924 13 C -0.213 4.213 14 C -0.005 4.005 15 C -0.575 4.575 16 H 0.061 0.939 17 C -0.188 4.188 18 N -0.565 5.565 19 Si 0.782 3.218 20 H -0.196 1.196 21 H -0.199 1.199 22 H -0.197 1.197 23 C -0.152 4.152 24 H 0.101 0.899 25 H 0.109 0.891 26 H 0.090 0.910 27 H 0.178 0.822 28 H 0.234 0.766 29 H 0.243 0.757 30 H 0.143 0.857 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.029 0.971 36 H 0.075 0.925 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.664 12.117 -6.787 20.935 hybrid contribution 0.757 -0.143 0.963 1.234 sum -14.907 11.975 -5.824 19.988 Atomic orbital electron populations 1.20864 0.88051 1.04208 1.03571 1.19896 0.97791 0.91084 0.96226 1.21025 0.91371 0.99353 1.06657 1.17691 0.91968 0.86454 0.93554 1.42411 1.09605 1.04263 1.84219 1.20905 1.00240 0.90812 1.06644 1.18950 0.93880 0.89503 1.06953 1.21858 0.81726 0.90276 0.71755 1.90709 1.69895 1.34723 1.48194 1.86621 1.19786 1.36801 1.82481 1.22968 0.94212 0.81236 0.97538 0.92394 1.22143 1.02176 1.02758 0.94247 1.19134 0.90157 0.97023 0.94232 1.21375 0.92417 1.48444 0.95258 0.93937 1.25779 0.94750 0.94977 1.03282 1.70042 0.98703 1.50605 1.37172 0.85569 0.77927 0.78634 0.79696 1.19618 1.19883 1.19724 1.20977 0.91130 0.99532 1.03586 0.89910 0.89086 0.90999 0.82162 0.76578 0.75661 0.85741 0.91251 0.89524 0.92366 0.95323 0.97098 0.92468 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.01 71.24 0.71 -0.82 16 2 C -0.05 -1.07 5.87 -19.92 -0.12 -1.19 16 3 C -0.16 -3.12 9.53 22.45 0.21 -2.90 16 4 C 0.21 4.86 6.75 38.17 0.26 5.12 16 5 N -0.86 -13.90 9.09 -51.45 -0.47 -14.36 16 6 C -0.16 -5.10 9.46 22.68 0.21 -4.88 16 7 C -0.09 -3.22 5.87 -20.11 -0.12 -3.34 16 8 C 0.50 21.38 7.87 70.33 0.55 21.93 16 9 O -0.54 -25.01 15.60 19.95 0.31 -24.70 16 10 O -0.34 -15.78 8.89 -56.18 -0.50 -16.28 16 11 C 0.09 4.42 2.51 30.60 0.08 4.50 16 12 H 0.06 2.87 7.16 -2.39 -0.02 2.85 16 13 C -0.16 -5.83 9.55 71.98 0.69 -5.14 16 14 C 0.03 1.70 4.69 29.85 0.14 1.84 16 15 C -0.54 -31.85 8.89 25.60 0.23 -31.63 16 16 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16 17 C 0.01 0.62 5.46 84.66 0.46 1.08 16 18 N -0.93 -55.90 13.29 21.45 0.28 -55.62 16 19 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 23 C -0.13 -3.90 9.24 22.55 0.21 -3.69 16 24 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.09 0.84 8.08 -2.39 -0.02 0.82 16 26 H 0.07 0.98 8.08 -2.39 -0.02 0.97 16 27 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 28 H 0.41 6.28 8.84 -92.71 -0.82 5.46 16 29 H 0.41 4.05 8.84 -92.71 -0.82 3.23 16 30 H 0.12 4.17 7.61 -2.91 -0.02 4.15 16 31 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 33 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 37 H 0.13 3.76 7.64 -2.91 -0.02 3.74 16 Total: -1.00 -72.29 322.64 4.62 -67.67 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -0.55 Total: 14.89 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 3.52 Total: -19.11 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -0.18 Total: -69.98 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.19 Total: -40.98 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -72.29 4.62 -67.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.926 kcal (2) G-P(sol) polarization free energy of solvation -72.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds