Wall clock time and date at job start Mon Mar 30 2020 07:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38255 * 119.88219 * 2 1 4 4 C 1.38991 * 120.22595 * 179.97438 * 3 2 1 5 5 N 1.39718 * 119.99602 * 180.02562 * 4 3 2 6 6 C 1.38661 * 119.99746 * 0.04345 * 4 3 2 7 7 C 1.39505 * 119.77134 * 359.97438 * 6 4 3 8 8 C 1.47745 * 120.11515 * 179.97438 * 7 6 4 9 9 O 1.21467 * 119.99987 * 180.02562 * 8 7 6 10 10 O 1.34712 * 119.99792 * 0.02562 * 8 7 6 11 11 C 1.45204 * 116.99991 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.46924 * 29.99594 * 11 10 8 13 13 C 1.53006 * 109.46650 * 270.00132 * 11 10 8 14 14 C 1.52991 * 109.47575 * 149.99959 * 11 10 8 15 15 C 1.50704 * 109.47129 * 295.00045 * 14 11 10 16 16 H 1.08007 * 119.99829 * 359.97438 * 15 14 11 17 17 C 1.37878 * 119.99982 * 179.97438 * 15 14 11 18 18 N 1.31520 * 119.99680 * 179.97438 * 17 15 14 19 19 Si 1.86791 * 120.00150 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47562 * 89.99690 * 19 17 15 21 21 H 1.48500 * 109.47062 * 210.00078 * 19 17 15 22 22 H 1.48499 * 109.47199 * 329.99770 * 19 17 15 23 23 C 1.37971 * 119.88179 * 180.02562 * 2 1 3 24 24 H 1.08992 * 109.47120 * 269.97699 * 1 2 3 25 25 H 1.09005 * 109.47010 * 29.97670 * 1 2 3 26 26 H 1.09003 * 109.47314 * 149.97527 * 1 2 3 27 27 H 1.07997 * 119.88507 * 0.02562 * 3 2 1 28 28 H 0.96999 * 119.99367 * 179.97438 * 5 4 3 29 29 H 0.96995 * 120.00532 * 359.97438 * 5 4 3 30 30 H 1.08006 * 120.11104 * 180.25764 * 6 4 3 31 31 H 1.09000 * 109.47017 * 299.99405 * 13 11 10 32 32 H 1.09000 * 109.47506 * 59.99991 * 13 11 10 33 33 H 1.09001 * 109.46548 * 180.02562 * 13 11 10 34 34 H 1.09001 * 109.47120 * 54.99781 * 14 11 10 35 35 H 1.08999 * 109.47738 * 174.99820 * 14 11 10 36 36 H 0.96997 * 119.99829 * 179.97438 * 18 17 15 37 37 H 1.07999 * 119.99884 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1987 0.0000 4 6 3.5857 1.2071 0.0005 5 7 4.2770 2.4213 0.0011 6 6 4.2862 0.0104 0.0002 7 6 3.5910 -1.1991 -0.0002 8 6 4.3297 -2.4787 -0.0012 9 8 3.7223 -3.5306 -0.0020 10 8 5.6768 -2.4787 -0.0012 11 6 6.3360 -3.7725 -0.0027 12 1 5.7079 -4.4996 -0.5174 13 6 6.5675 -4.2285 1.4393 14 6 7.6806 -3.6590 -0.7238 15 6 7.4458 -3.3295 -2.1755 16 1 6.4383 -3.2130 -2.5468 17 6 8.5173 -3.1766 -3.0297 18 7 8.3123 -2.8895 -4.2967 19 14 10.2598 -3.3786 -2.3878 20 1 10.6749 -4.7982 -2.5207 21 1 11.1798 -2.5181 -3.1742 22 1 10.3100 -2.9801 -0.9582 23 6 2.1944 -1.1963 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6521 2.1318 0.0004 28 1 5.2469 2.4271 0.0018 29 1 3.7870 3.2584 0.0007 30 1 5.3662 0.0147 0.0048 31 1 7.1956 -3.5014 1.9540 32 1 5.6095 -4.3094 1.9531 33 1 7.0627 -5.1995 1.4381 34 1 8.2743 -2.8693 -0.2634 35 1 8.2147 -4.6061 -0.6480 36 1 9.0661 -2.7815 -4.8976 37 1 1.6525 -2.1305 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695812091.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:46 Heat of formation + Delta-G solvation = -77.402123 kcal Electronic energy + Delta-G solvation = -19402.359561 eV Core-core repulsion = 16336.922430 eV Total energy + Delta-G solvation = -3065.437131 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.13931 -38.93592 -36.21002 -34.78799 -33.43733 -32.47244 -31.53478 -28.92873 -27.97132 -26.88663 -24.59349 -22.91089 -21.32949 -20.68389 -19.69270 -17.64223 -16.76536 -16.74158 -16.29044 -15.85981 -15.30649 -15.14831 -14.33930 -14.20840 -13.85882 -13.28246 -13.04769 -12.99021 -12.70164 -12.47694 -12.22087 -12.15581 -11.78284 -11.73733 -11.44821 -11.31064 -10.89793 -10.70063 -10.43501 -10.17692 -9.97586 -9.75967 -9.41620 -9.20153 -8.73180 -8.54723 -7.54389 -6.03294 -4.01557 0.96099 1.59832 2.99729 3.25739 3.31920 3.37569 3.40151 3.82174 4.01461 4.44110 4.77116 4.95673 5.20406 5.27814 5.33516 5.43689 5.50817 5.55585 5.60349 5.68544 5.75405 5.82616 5.91470 6.02043 6.24947 6.26699 6.42339 6.53744 6.58094 6.62764 6.79562 7.00527 7.03525 7.37763 7.44299 7.72364 7.73187 8.37969 8.52801 9.01408 9.56924 11.10234 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021058 B = 0.005137 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.367946 B = 5449.542069 C = 6011.339887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.056 4.056 3 C -0.173 4.173 4 C 0.205 3.795 5 N -0.879 5.879 6 C -0.140 4.140 7 C -0.064 4.064 8 C 0.504 3.496 9 O -0.516 6.516 10 O -0.328 6.328 11 C 0.101 3.899 12 H 0.080 0.920 13 C -0.169 4.169 14 C -0.012 4.012 15 C -0.516 4.516 16 H 0.072 0.928 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.878 3.122 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.117 4.117 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.122 0.878 28 H 0.401 0.599 29 H 0.396 0.604 30 H 0.140 0.860 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.029 0.971 35 H 0.035 0.965 36 H 0.263 0.737 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.774 9.254 11.407 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.057 4.057 3 C -0.195 4.195 4 C 0.101 3.899 5 N -0.418 5.418 6 C -0.162 4.162 7 C -0.066 4.066 8 C 0.349 3.651 9 O -0.407 6.407 10 O -0.244 6.244 11 C 0.047 3.953 12 H 0.099 0.901 13 C -0.227 4.227 14 C -0.049 4.049 15 C -0.554 4.554 16 H 0.090 0.910 17 C -0.133 4.133 18 N -0.540 5.540 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.189 1.189 23 C -0.137 4.137 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.140 0.860 28 H 0.230 0.770 29 H 0.224 0.776 30 H 0.158 0.842 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.821 8.916 11.234 17.966 hybrid contribution 1.248 0.151 0.072 1.259 sum -9.573 9.067 11.306 17.368 Atomic orbital electron populations 1.20775 0.90842 1.02899 1.02316 1.19492 0.95895 0.92041 0.98270 1.20591 0.91928 0.98056 1.08973 1.17618 0.91229 0.86495 0.94598 1.42420 1.09193 1.04627 1.85573 1.20976 1.00747 0.89964 1.04552 1.18952 0.93064 0.90647 1.03900 1.21130 0.82258 0.89060 0.72630 1.90753 1.69753 1.33535 1.46620 1.86620 1.18760 1.36745 1.82248 1.22883 0.95527 0.81648 0.95253 0.90149 1.22267 1.01624 1.01782 0.96983 1.19768 0.90749 0.97604 0.96829 1.21015 0.95221 1.47955 0.91200 0.91029 1.24995 0.99003 0.94635 0.94707 1.69919 1.31318 1.48866 1.03893 0.86815 0.84865 0.78350 0.79478 1.20230 1.21303 1.18944 1.20873 0.92070 0.98323 1.02459 0.91120 0.91564 0.91224 0.86029 0.77038 0.77578 0.84231 0.92128 0.92973 0.91071 0.95302 0.94752 0.92734 0.84982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.00 36.01 0.36 -0.64 16 2 C -0.06 -0.69 5.87 -104.71 -0.61 -1.31 16 3 C -0.17 -2.01 9.53 -39.30 -0.37 -2.38 16 4 C 0.20 2.61 6.75 -83.83 -0.57 2.05 16 5 N -0.88 -8.33 9.09 32.39 0.29 -8.04 16 6 C -0.14 -2.18 9.46 -38.95 -0.37 -2.55 16 7 C -0.06 -1.11 5.87 -105.01 -0.62 -1.72 16 8 C 0.50 10.36 7.87 34.62 0.27 10.64 16 9 O -0.52 -11.38 15.60 -19.24 -0.30 -11.68 16 10 O -0.33 -7.13 8.89 -40.53 -0.36 -7.49 16 11 C 0.10 2.19 2.51 -26.73 -0.07 2.12 16 12 H 0.08 1.85 7.16 -51.93 -0.37 1.48 16 13 C -0.17 -2.92 9.55 37.16 0.35 -2.57 16 14 C -0.01 -0.30 3.76 -27.89 -0.10 -0.40 16 15 C -0.52 -14.97 9.44 -34.44 -0.33 -15.29 16 16 H 0.07 2.30 7.99 -52.48 -0.42 1.88 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 19 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 23 C -0.12 -1.77 9.24 -39.15 -0.36 -2.13 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 26 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 27 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.40 3.50 8.84 -40.82 -0.36 3.14 16 29 H 0.40 2.74 8.84 -40.82 -0.36 2.38 16 30 H 0.14 2.23 7.61 -52.48 -0.40 1.83 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 35 H 0.03 0.79 7.57 -51.93 -0.39 0.40 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.13 1.96 7.64 -52.49 -0.40 1.56 16 LS Contribution 319.04 15.07 4.81 4.81 Total: -1.00 -33.60 319.04 -7.16 -40.76 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.20 Total: 4.35 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -2.51 Total: -12.30 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 1.07 Total: -35.31 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.66 Total: -19.17 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.60 -7.16 -40.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812091.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.638 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds