Wall clock time and date at job start Mon Mar 30 2020 07:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38255 * 119.88219 * 2 1 4 4 C 1.38991 * 120.22595 * 179.97438 * 3 2 1 5 5 N 1.39718 * 119.99602 * 180.02562 * 4 3 2 6 6 C 1.38661 * 119.99746 * 0.04345 * 4 3 2 7 7 C 1.39505 * 119.77134 * 359.97438 * 6 4 3 8 8 C 1.47745 * 120.11515 * 179.97438 * 7 6 4 9 9 O 1.21467 * 119.99987 * 180.02562 * 8 7 6 10 10 O 1.34712 * 119.99792 * 0.02562 * 8 7 6 11 11 C 1.45204 * 116.99991 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.46924 * 29.99594 * 11 10 8 13 13 C 1.53006 * 109.46650 * 270.00132 * 11 10 8 14 14 C 1.52991 * 109.47575 * 149.99959 * 11 10 8 15 15 C 1.50704 * 109.47129 * 295.00045 * 14 11 10 16 16 H 1.08007 * 119.99829 * 359.97438 * 15 14 11 17 17 C 1.37878 * 119.99982 * 179.97438 * 15 14 11 18 18 N 1.31520 * 119.99680 * 179.97438 * 17 15 14 19 19 Si 1.86791 * 120.00150 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47562 * 89.99690 * 19 17 15 21 21 H 1.48500 * 109.47062 * 210.00078 * 19 17 15 22 22 H 1.48499 * 109.47199 * 329.99770 * 19 17 15 23 23 C 1.37971 * 119.88179 * 180.02562 * 2 1 3 24 24 H 1.08992 * 109.47120 * 269.97699 * 1 2 3 25 25 H 1.09005 * 109.47010 * 29.97670 * 1 2 3 26 26 H 1.09003 * 109.47314 * 149.97527 * 1 2 3 27 27 H 1.07997 * 119.88507 * 0.02562 * 3 2 1 28 28 H 0.96999 * 119.99367 * 179.97438 * 5 4 3 29 29 H 0.96995 * 120.00532 * 359.97438 * 5 4 3 30 30 H 1.08006 * 120.11104 * 180.25764 * 6 4 3 31 31 H 1.09000 * 109.47017 * 299.99405 * 13 11 10 32 32 H 1.09000 * 109.47506 * 59.99991 * 13 11 10 33 33 H 1.09001 * 109.46548 * 180.02562 * 13 11 10 34 34 H 1.09001 * 109.47120 * 54.99781 * 14 11 10 35 35 H 1.08999 * 109.47738 * 174.99820 * 14 11 10 36 36 H 0.96997 * 119.99829 * 179.97438 * 18 17 15 37 37 H 1.07999 * 119.99884 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1987 0.0000 4 6 3.5857 1.2071 0.0005 5 7 4.2770 2.4213 0.0011 6 6 4.2862 0.0104 0.0002 7 6 3.5910 -1.1991 -0.0002 8 6 4.3297 -2.4787 -0.0012 9 8 3.7223 -3.5306 -0.0020 10 8 5.6768 -2.4787 -0.0012 11 6 6.3360 -3.7725 -0.0027 12 1 5.7079 -4.4996 -0.5174 13 6 6.5675 -4.2285 1.4393 14 6 7.6806 -3.6590 -0.7238 15 6 7.4458 -3.3295 -2.1755 16 1 6.4383 -3.2130 -2.5468 17 6 8.5173 -3.1766 -3.0297 18 7 8.3123 -2.8895 -4.2967 19 14 10.2598 -3.3786 -2.3878 20 1 10.6749 -4.7982 -2.5207 21 1 11.1798 -2.5181 -3.1742 22 1 10.3100 -2.9801 -0.9582 23 6 2.1944 -1.1963 -0.0005 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6521 2.1318 0.0004 28 1 5.2469 2.4271 0.0018 29 1 3.7870 3.2584 0.0007 30 1 5.3662 0.0147 0.0048 31 1 7.1956 -3.5014 1.9540 32 1 5.6095 -4.3094 1.9531 33 1 7.0627 -5.1995 1.4381 34 1 8.2743 -2.8693 -0.2634 35 1 8.2147 -4.6061 -0.6480 36 1 9.0661 -2.7815 -4.8976 37 1 1.6525 -2.1305 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812091.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:46 Heat of formation + Delta-G solvation = -99.318560 kcal Electronic energy + Delta-G solvation = -19403.309929 eV Core-core repulsion = 16336.922430 eV Total energy + Delta-G solvation = -3066.387499 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.62308 -40.15863 -37.87369 -35.74660 -35.40121 -33.94540 -33.16209 -29.94783 -29.81379 -27.81581 -26.00165 -24.77690 -22.38149 -22.23298 -21.33185 -19.07502 -18.88616 -18.02833 -17.47503 -16.97604 -16.92800 -16.56677 -16.08794 -15.33960 -14.96863 -14.78862 -14.61445 -14.40764 -14.06677 -14.04090 -13.55054 -13.41047 -13.23541 -13.01008 -12.66044 -12.56208 -12.52299 -12.38235 -12.00231 -11.70573 -11.57604 -11.48378 -11.40836 -11.14362 -10.78649 -9.79658 -8.51697 -8.29623 -6.35445 -0.27502 0.52417 1.37128 1.39407 1.51602 1.56938 1.78582 2.36255 2.83345 2.95120 3.05459 3.63509 3.86032 3.95828 4.12396 4.20197 4.30067 4.35490 4.43560 4.43922 4.70311 4.81355 4.87312 4.90085 4.90447 5.01897 5.13736 5.16216 5.21523 5.24323 5.40564 5.55569 5.59881 5.65713 5.81333 6.21866 6.52803 6.68377 6.77220 7.01531 7.27289 8.88022 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021058 B = 0.005137 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.367946 B = 5449.542069 C = 6011.339887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.049 4.049 3 C -0.162 4.162 4 C 0.209 3.791 5 N -0.864 5.864 6 C -0.162 4.162 7 C -0.092 4.092 8 C 0.498 3.502 9 O -0.543 6.543 10 O -0.342 6.342 11 C 0.095 3.905 12 H 0.053 0.947 13 C -0.157 4.157 14 C -0.007 4.007 15 C -0.530 4.530 16 H 0.016 0.984 17 C 0.004 3.996 18 N -0.953 5.953 19 Si 0.957 3.043 20 H -0.262 1.262 21 H -0.283 1.283 22 H -0.240 1.240 23 C -0.133 4.133 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.162 0.838 28 H 0.405 0.595 29 H 0.413 0.587 30 H 0.126 0.874 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.038 0.962 35 H 0.055 0.945 36 H 0.267 0.733 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.494 10.924 13.316 20.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.050 4.050 3 C -0.184 4.184 4 C 0.103 3.897 5 N -0.405 5.405 6 C -0.185 4.185 7 C -0.094 4.094 8 C 0.345 3.655 9 O -0.436 6.436 10 O -0.257 6.257 11 C 0.041 3.959 12 H 0.071 0.929 13 C -0.214 4.214 14 C -0.045 4.045 15 C -0.568 4.568 16 H 0.034 0.966 17 C -0.192 4.192 18 N -0.593 5.593 19 Si 0.779 3.221 20 H -0.187 1.187 21 H -0.209 1.209 22 H -0.163 1.163 23 C -0.154 4.154 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.087 0.913 27 H 0.179 0.821 28 H 0.234 0.766 29 H 0.244 0.756 30 H 0.144 0.856 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.551 10.619 13.164 19.934 hybrid contribution 1.015 -0.265 -0.602 1.209 sum -9.536 10.354 12.563 18.867 Atomic orbital electron populations 1.20867 0.88015 1.04039 1.03757 1.19902 0.97831 0.91076 0.96214 1.21031 0.91406 0.99349 1.06654 1.17692 0.91973 0.86481 0.93521 1.42400 1.09601 1.04225 1.84227 1.20904 1.00269 0.90779 1.06586 1.18962 0.93911 0.89585 1.06961 1.21837 0.81753 0.90256 0.71665 1.90709 1.69909 1.34760 1.48245 1.86599 1.19768 1.36830 1.82541 1.22853 0.93875 0.81327 0.97838 0.92889 1.22180 1.02471 1.03229 0.93537 1.19715 0.92489 0.98552 0.93700 1.21245 0.92986 1.48333 0.94230 0.96604 1.26074 1.04635 0.93858 0.94671 1.70095 1.33197 1.50268 1.05741 0.85567 0.77513 0.79018 0.79990 1.18730 1.20911 1.16262 1.20975 0.91184 0.99536 1.03668 0.89375 0.89260 0.91307 0.82094 0.76555 0.75649 0.85628 0.90481 0.92627 0.88767 0.94358 0.92723 0.92413 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 10.00 71.24 0.71 -0.94 16 2 C -0.05 -1.13 5.87 -19.92 -0.12 -1.25 16 3 C -0.16 -3.29 9.53 22.45 0.21 -3.08 16 4 C 0.21 5.06 6.75 38.17 0.26 5.32 16 5 N -0.86 -14.49 9.09 -51.45 -0.47 -14.96 16 6 C -0.16 -5.23 9.46 22.68 0.21 -5.02 16 7 C -0.09 -3.38 5.87 -20.11 -0.12 -3.50 16 8 C 0.50 21.89 7.87 70.34 0.55 22.45 16 9 O -0.54 -25.69 15.60 19.94 0.31 -25.38 16 10 O -0.34 -15.66 8.89 -56.22 -0.50 -16.16 16 11 C 0.10 4.24 2.51 30.59 0.08 4.32 16 12 H 0.05 2.60 7.16 -2.39 -0.02 2.58 16 13 C -0.16 -5.25 9.55 71.98 0.69 -4.56 16 14 C -0.01 -0.36 3.76 29.85 0.11 -0.25 16 15 C -0.53 -32.03 9.44 25.60 0.24 -31.79 16 16 H 0.02 1.08 7.99 -2.91 -0.02 1.06 16 17 C 0.00 0.25 5.47 84.65 0.46 0.71 16 18 N -0.95 -61.34 13.96 21.45 0.30 -61.04 16 19 Si 0.96 43.99 27.47 68.60 1.88 45.87 16 20 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.24 -9.98 6.54 99.48 0.65 -9.32 16 23 C -0.13 -4.12 9.24 22.55 0.21 -3.91 16 24 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.09 0.96 8.08 -2.38 -0.02 0.94 16 26 H 0.07 1.06 8.08 -2.39 -0.02 1.05 16 27 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 28 H 0.41 6.47 8.84 -92.71 -0.82 5.65 16 29 H 0.41 4.33 8.84 -92.71 -0.82 3.51 16 30 H 0.13 4.26 7.61 -2.91 -0.02 4.24 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.04 1.78 7.20 -2.39 -0.02 1.76 16 35 H 0.05 2.42 7.57 -2.39 -0.02 2.40 16 36 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 37 H 0.12 3.91 7.64 -2.91 -0.02 3.89 16 Total: -1.00 -77.71 319.04 4.43 -73.28 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.60 Total: 19.88 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 3.51 Total: -21.50 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -0.17 Total: -75.99 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -0.19 Total: -41.54 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.87 kcal Total: -77.71 4.43 -73.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812091.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.036 kcal (2) G-P(sol) polarization free energy of solvation -77.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds