Wall clock time and date at job start Mon Mar 30 2020 07:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38254 * 119.88234 * 2 1 4 4 C 1.37975 * 120.23126 * 180.02562 * 3 2 1 5 5 C 1.39665 * 120.00085 * 359.97438 * 4 3 2 6 6 C 1.47738 * 120.11659 * 180.02562 * 5 4 3 7 7 O 1.21466 * 120.00450 * 180.02562 * 6 5 4 8 8 O 1.34714 * 119.99809 * 359.97438 * 6 5 4 9 9 C 1.45200 * 116.99769 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47094 * 30.01101 * 9 8 6 11 11 C 1.52998 * 109.47637 * 270.00269 * 9 8 6 12 12 C 1.53008 * 109.46613 * 150.00311 * 9 8 6 13 13 C 1.50698 * 109.47312 * 295.00100 * 12 9 8 14 14 H 1.08001 * 119.99741 * 0.02562 * 13 12 9 15 15 C 1.37875 * 120.00040 * 180.02562 * 13 12 9 16 16 N 1.31521 * 120.00023 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00038 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47323 * 90.00189 * 17 15 13 19 19 H 1.48503 * 109.47324 * 210.00206 * 17 15 13 20 20 H 1.48495 * 109.47223 * 330.00105 * 17 15 13 21 21 C 1.39510 * 119.77091 * 359.97438 * 5 4 3 22 22 C 1.38673 * 119.76717 * 359.73215 * 21 5 4 23 23 N 1.39707 * 120.00024 * 180.26818 * 22 21 5 24 24 H 1.09002 * 109.47152 * 90.00200 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00301 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00281 * 1 2 3 27 27 H 1.07999 * 119.88538 * 0.02562 * 3 2 1 28 28 H 1.07998 * 119.99719 * 180.02562 * 4 3 2 29 29 H 1.08996 * 109.47069 * 59.99901 * 11 9 8 30 30 H 1.08997 * 109.46999 * 180.02562 * 11 9 8 31 31 H 1.09003 * 109.46879 * 300.00569 * 11 9 8 32 32 H 1.08994 * 109.47333 * 55.00388 * 12 9 8 33 33 H 1.09005 * 109.46908 * 175.00449 * 12 9 8 34 34 H 0.96992 * 119.99985 * 179.97438 * 16 15 13 35 35 H 1.07994 * 120.11661 * 179.97438 * 21 5 4 36 36 H 0.96999 * 119.99748 * 180.27153 * 23 22 21 37 37 H 0.96994 * 120.00451 * 0.27368 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1987 0.0000 4 6 3.5756 1.2071 -0.0005 5 6 4.2813 0.0019 -0.0005 6 6 5.7586 0.0079 -0.0005 7 8 6.3703 -1.0415 -0.0010 8 8 6.4274 1.1773 -0.0011 9 6 7.8777 1.1072 -0.0004 10 1 8.1978 0.2005 -0.5137 11 6 8.3867 1.0835 1.4422 12 6 8.4476 2.3300 -0.7223 13 6 8.0470 2.2881 -2.1744 14 1 7.4457 1.4713 -2.5453 15 6 8.4481 3.2926 -3.0295 16 7 8.0981 3.2563 -4.2967 17 14 9.4876 4.7057 -2.3878 18 1 10.9261 4.3608 -2.5173 19 1 9.1992 5.9304 -3.1767 20 1 9.1637 4.9496 -0.9593 21 6 3.5863 -1.2078 0.0005 22 6 2.1995 -1.2051 0.0072 23 7 1.4987 -2.4136 0.0140 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.6521 2.1318 0.0004 28 1 4.1098 2.1457 -0.0001 29 1 7.9806 0.2124 1.9564 30 1 9.4754 1.0313 1.4425 31 1 8.0665 1.9903 1.9554 32 1 8.0562 3.2379 -0.2635 33 1 9.5349 2.3235 -0.6450 34 1 8.3800 3.9631 -4.8982 35 1 4.1263 -2.1430 0.0001 36 1 0.5287 -2.4117 0.0147 37 1 1.9819 -3.2545 0.0180 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695812599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:50 Heat of formation + Delta-G solvation = -74.501843 kcal Electronic energy + Delta-G solvation = -19354.094071 eV Core-core repulsion = 16288.782706 eV Total energy + Delta-G solvation = -3065.311365 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.16140 -39.05327 -36.18995 -34.63402 -33.32721 -32.59003 -31.62583 -28.92715 -27.98284 -27.45917 -23.64616 -22.60318 -22.15331 -20.64606 -19.70581 -17.83535 -17.12452 -16.74467 -16.29558 -15.47265 -15.28055 -14.95167 -14.23008 -14.12728 -14.03321 -13.57899 -13.17789 -12.98370 -12.69372 -12.45888 -12.31656 -12.12141 -11.76606 -11.67803 -11.48913 -11.12694 -10.87939 -10.68264 -10.62298 -10.16648 -9.96322 -9.74254 -9.40317 -9.18590 -8.75438 -8.52866 -7.54780 -6.01512 -3.99768 0.92872 1.63128 2.98317 3.23632 3.32540 3.39395 3.42143 3.82291 4.01536 4.46045 4.79291 4.82006 5.11668 5.17540 5.33452 5.43450 5.47716 5.55400 5.60153 5.64580 5.72337 5.87027 5.90965 6.00917 6.19736 6.30304 6.43603 6.55486 6.58309 6.60988 6.80920 7.01703 7.05091 7.37581 7.39335 7.63367 7.75024 8.38826 8.54486 9.03074 9.58763 11.12048 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024040 B = 0.004761 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.430709 B = 5879.351241 C = 6430.627372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.139 4.139 3 C -0.088 4.088 4 C -0.109 4.109 5 C -0.074 4.074 6 C 0.505 3.495 7 O -0.519 6.519 8 O -0.327 6.327 9 C 0.101 3.899 10 H 0.080 0.920 11 C -0.169 4.169 12 C -0.013 4.013 13 C -0.516 4.516 14 H 0.071 0.929 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.878 3.122 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.264 1.264 21 C -0.133 4.133 22 C 0.199 3.801 23 N -0.880 5.880 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.129 0.871 28 H 0.140 0.860 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.029 0.971 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.133 0.867 36 H 0.397 0.603 37 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.961 -6.771 11.388 19.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.143 4.143 3 C -0.107 4.107 4 C -0.129 4.129 5 C -0.075 4.075 6 C 0.350 3.650 7 O -0.410 6.410 8 O -0.242 6.242 9 C 0.047 3.953 10 H 0.098 0.902 11 C -0.227 4.227 12 C -0.050 4.050 13 C -0.554 4.554 14 H 0.090 0.910 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.705 3.295 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.156 4.156 22 C 0.095 3.905 23 N -0.421 5.421 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.147 0.853 28 H 0.158 0.842 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.151 0.849 36 H 0.226 0.774 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -13.699 -6.904 11.218 19.005 hybrid contribution 0.546 0.346 0.072 0.650 sum -13.153 -6.559 11.291 18.534 Atomic orbital electron populations 1.20645 0.91267 1.02358 1.02122 1.19570 0.95846 0.91864 1.07070 1.20792 0.93770 0.97012 0.99119 1.21351 0.93984 0.97962 0.99566 1.18939 0.89665 0.94193 1.04731 1.21124 0.88713 0.82616 0.72563 1.90746 1.70094 1.33355 1.46825 1.86623 1.23402 1.31977 1.82210 1.22884 0.74682 1.02495 0.95240 0.90195 1.22264 1.01635 1.01768 0.96983 1.19771 0.95687 0.92673 0.96830 1.21010 1.33507 1.09729 0.91152 0.91040 1.24992 0.95824 0.97803 0.94707 1.69917 1.46257 1.33973 1.03869 0.86812 0.80885 0.82280 0.79522 1.20277 1.21287 1.18903 1.20592 0.91736 0.97975 1.05254 1.17320 0.90566 0.86420 0.96148 1.42442 1.08765 1.04915 1.86010 0.91305 0.91246 0.92261 0.85347 0.84192 0.93024 0.91087 0.92068 0.95226 0.94769 0.92735 0.84888 0.77385 0.77398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.57 36.01 0.34 -0.51 16 2 C -0.14 -1.60 5.90 -104.34 -0.62 -2.22 16 3 C -0.09 -1.11 9.67 -39.67 -0.38 -1.50 16 4 C -0.11 -1.68 9.61 -39.15 -0.38 -2.06 16 5 C -0.07 -1.27 5.87 -105.01 -0.62 -1.88 16 6 C 0.50 10.36 7.87 34.61 0.27 10.63 16 7 O -0.52 -11.44 15.60 -19.24 -0.30 -11.74 16 8 O -0.33 -7.11 8.89 -40.53 -0.36 -7.47 16 9 C 0.10 2.19 2.51 -26.73 -0.07 2.13 16 10 H 0.08 1.85 7.16 -51.93 -0.37 1.47 16 11 C -0.17 -2.93 9.55 37.16 0.35 -2.57 16 12 C -0.01 -0.30 3.76 -27.88 -0.10 -0.41 16 13 C -0.52 -15.02 9.44 -34.44 -0.33 -15.34 16 14 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -28.13 13.96 55.43 0.77 -27.35 16 17 Si 0.88 21.61 27.47 -169.99 -4.67 16.95 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 20 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 21 C -0.13 -1.98 9.44 -38.95 -0.37 -2.35 16 22 C 0.20 2.43 6.73 -83.83 -0.56 1.87 16 23 N -0.88 -7.55 8.99 32.39 0.29 -7.26 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 26 H 0.06 0.38 6.51 -51.93 -0.34 0.04 16 27 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.14 2.21 7.60 -52.49 -0.40 1.81 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 33 H 0.03 0.79 7.57 -51.93 -0.39 0.40 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.13 1.94 7.65 -52.49 -0.40 1.54 16 36 H 0.40 2.55 6.80 -40.82 -0.28 2.27 16 37 H 0.40 2.89 8.84 -40.82 -0.36 2.53 16 LS Contribution 315.39 15.07 4.75 4.75 Total: -1.00 -33.77 315.39 -7.09 -40.86 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.04 Total: 3.58 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -2.55 Total: -12.31 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 1.06 Total: -34.62 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.66 Total: -19.21 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.77 -7.09 -40.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.639 kcal (2) G-P(sol) polarization free energy of solvation -33.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds