Wall clock time and date at job start Mon Mar 30 2020 07:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38254 * 119.88234 * 2 1 4 4 C 1.37975 * 120.23126 * 180.02562 * 3 2 1 5 5 C 1.39665 * 120.00085 * 359.97438 * 4 3 2 6 6 C 1.47738 * 120.11659 * 180.02562 * 5 4 3 7 7 O 1.21466 * 120.00450 * 180.02562 * 6 5 4 8 8 O 1.34714 * 119.99809 * 359.97438 * 6 5 4 9 9 C 1.45200 * 116.99769 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47094 * 30.01101 * 9 8 6 11 11 C 1.52998 * 109.47637 * 270.00269 * 9 8 6 12 12 C 1.53008 * 109.46613 * 150.00311 * 9 8 6 13 13 C 1.50698 * 109.47312 * 295.00100 * 12 9 8 14 14 H 1.08001 * 119.99741 * 0.02562 * 13 12 9 15 15 C 1.37875 * 120.00040 * 180.02562 * 13 12 9 16 16 N 1.31521 * 120.00023 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00038 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47323 * 90.00189 * 17 15 13 19 19 H 1.48503 * 109.47324 * 210.00206 * 17 15 13 20 20 H 1.48495 * 109.47223 * 330.00105 * 17 15 13 21 21 C 1.39510 * 119.77091 * 359.97438 * 5 4 3 22 22 C 1.38673 * 119.76717 * 359.73215 * 21 5 4 23 23 N 1.39707 * 120.00024 * 180.26818 * 22 21 5 24 24 H 1.09002 * 109.47152 * 90.00200 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00301 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00281 * 1 2 3 27 27 H 1.07999 * 119.88538 * 0.02562 * 3 2 1 28 28 H 1.07998 * 119.99719 * 180.02562 * 4 3 2 29 29 H 1.08996 * 109.47069 * 59.99901 * 11 9 8 30 30 H 1.08997 * 109.46999 * 180.02562 * 11 9 8 31 31 H 1.09003 * 109.46879 * 300.00569 * 11 9 8 32 32 H 1.08994 * 109.47333 * 55.00388 * 12 9 8 33 33 H 1.09005 * 109.46908 * 175.00449 * 12 9 8 34 34 H 0.96992 * 119.99985 * 179.97438 * 16 15 13 35 35 H 1.07994 * 120.11661 * 179.97438 * 21 5 4 36 36 H 0.96999 * 119.99748 * 180.27153 * 23 22 21 37 37 H 0.96994 * 120.00451 * 0.27368 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1987 0.0000 4 6 3.5756 1.2071 -0.0005 5 6 4.2813 0.0019 -0.0005 6 6 5.7586 0.0079 -0.0005 7 8 6.3703 -1.0415 -0.0010 8 8 6.4274 1.1773 -0.0011 9 6 7.8777 1.1072 -0.0004 10 1 8.1978 0.2005 -0.5137 11 6 8.3867 1.0835 1.4422 12 6 8.4476 2.3300 -0.7223 13 6 8.0470 2.2881 -2.1744 14 1 7.4457 1.4713 -2.5453 15 6 8.4481 3.2926 -3.0295 16 7 8.0981 3.2563 -4.2967 17 14 9.4876 4.7057 -2.3878 18 1 10.9261 4.3608 -2.5173 19 1 9.1992 5.9304 -3.1767 20 1 9.1637 4.9496 -0.9593 21 6 3.5863 -1.2078 0.0005 22 6 2.1995 -1.2051 0.0072 23 7 1.4987 -2.4136 0.0140 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.6521 2.1318 0.0004 28 1 4.1098 2.1457 -0.0001 29 1 7.9806 0.2124 1.9564 30 1 9.4754 1.0313 1.4425 31 1 8.0665 1.9903 1.9554 32 1 8.0562 3.2379 -0.2635 33 1 9.5349 2.3235 -0.6450 34 1 8.3800 3.9631 -4.8982 35 1 4.1263 -2.1430 0.0001 36 1 0.5287 -2.4117 0.0147 37 1 1.9819 -3.2545 0.0180 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:50 Heat of formation + Delta-G solvation = -96.485157 kcal Electronic energy + Delta-G solvation = -19355.047339 eV Core-core repulsion = 16288.782706 eV Total energy + Delta-G solvation = -3066.264633 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.61767 -40.26474 -37.85781 -35.69132 -35.28210 -33.76341 -33.37557 -29.91483 -29.86398 -28.48330 -25.26096 -24.14651 -23.26279 -22.12057 -21.30352 -19.21708 -18.92852 -18.21752 -17.64629 -16.91929 -16.61417 -16.43555 -15.89802 -15.17033 -14.98288 -14.85297 -14.67886 -14.53657 -14.35575 -14.03746 -13.54447 -13.28709 -13.19291 -13.08475 -12.63466 -12.54741 -12.50336 -12.15872 -11.98949 -11.69680 -11.65128 -11.55148 -11.40705 -11.13334 -10.77332 -9.83572 -8.48129 -8.28395 -6.34163 -0.28960 0.55347 1.38222 1.40828 1.52961 1.56425 1.78245 2.37613 2.83723 2.97811 3.06905 3.66052 3.85272 3.96556 4.01555 4.14884 4.25347 4.35565 4.38824 4.60621 4.73334 4.78729 4.84976 4.88045 4.91207 5.02846 5.08504 5.18075 5.24997 5.28310 5.43474 5.52969 5.58262 5.66368 5.82696 6.23103 6.50411 6.69646 6.78435 6.98125 7.28605 8.89276 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024040 B = 0.004761 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.430709 B = 5879.351241 C = 6430.627372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.130 4.130 3 C -0.085 4.085 4 C -0.126 4.126 5 C -0.105 4.105 6 C 0.498 3.502 7 O -0.547 6.547 8 O -0.341 6.341 9 C 0.096 3.904 10 H 0.052 0.948 11 C -0.157 4.157 12 C -0.008 4.008 13 C -0.530 4.530 14 H 0.016 0.984 15 C 0.004 3.996 16 N -0.953 5.953 17 Si 0.957 3.043 18 H -0.263 1.263 19 H -0.283 1.283 20 H -0.239 1.239 21 C -0.148 4.148 22 C 0.204 3.796 23 N -0.863 5.863 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.158 0.842 28 H 0.127 0.873 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.039 0.961 33 H 0.055 0.945 34 H 0.267 0.733 35 H 0.127 0.873 36 H 0.411 0.589 37 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.306 -5.797 13.305 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.135 4.135 3 C -0.104 4.104 4 C -0.146 4.146 5 C -0.107 4.107 6 C 0.346 3.654 7 O -0.440 6.440 8 O -0.256 6.256 9 C 0.041 3.959 10 H 0.071 0.929 11 C -0.214 4.214 12 C -0.045 4.045 13 C -0.568 4.568 14 H 0.034 0.966 15 C -0.192 4.192 16 N -0.593 5.593 17 Si 0.779 3.221 18 H -0.187 1.187 19 H -0.209 1.209 20 H -0.162 1.162 21 C -0.171 4.171 22 C 0.099 3.901 23 N -0.406 5.406 24 H 0.098 0.902 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.176 0.824 28 H 0.145 0.855 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.243 0.757 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -15.079 -5.971 13.156 20.883 hybrid contribution 0.784 -0.084 -0.605 0.994 sum -14.295 -6.055 12.551 19.963 Atomic orbital electron populations 1.20767 0.87993 1.04245 1.03343 1.20052 0.98081 0.90936 1.04387 1.21116 0.92474 0.98909 0.97879 1.21354 0.95488 0.96756 1.00992 1.18932 0.87641 0.95985 1.08128 1.21828 0.90173 0.81829 0.71597 1.90701 1.70936 1.33884 1.48482 1.86601 1.23513 1.32985 1.82533 1.22849 0.75078 1.00119 0.97824 0.92929 1.22177 1.02916 1.02781 0.93532 1.19720 0.96925 0.94145 0.93696 1.21247 1.32988 1.08383 0.94192 0.96579 1.26073 0.97293 1.01200 0.94674 1.70092 1.48057 1.35463 1.05713 0.85568 0.78978 0.77529 0.80023 1.18742 1.20922 1.16232 1.20604 0.93140 0.96892 1.06498 1.17385 0.89647 0.88140 0.94977 1.42411 1.09525 1.04066 1.84552 0.90173 0.89624 0.90280 0.82441 0.85510 0.92667 0.88793 0.90425 0.94303 0.92732 0.92415 0.85502 0.75650 0.76492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.57 71.24 0.68 -0.58 16 2 C -0.13 -2.68 5.90 -19.68 -0.12 -2.80 16 3 C -0.09 -2.04 9.67 22.21 0.21 -1.82 16 4 C -0.13 -4.01 9.61 22.55 0.22 -3.80 16 5 C -0.11 -3.83 5.87 -20.11 -0.12 -3.94 16 6 C 0.50 21.88 7.87 70.33 0.55 22.44 16 7 O -0.55 -25.81 15.60 19.95 0.31 -25.50 16 8 O -0.34 -15.64 8.89 -56.23 -0.50 -16.14 16 9 C 0.10 4.26 2.51 30.60 0.08 4.34 16 10 H 0.05 2.58 7.16 -2.39 -0.02 2.57 16 11 C -0.16 -5.25 9.55 71.98 0.69 -4.57 16 12 C -0.01 -0.38 3.76 29.85 0.11 -0.26 16 13 C -0.53 -32.13 9.44 25.60 0.24 -31.89 16 14 H 0.02 1.10 7.99 -2.91 -0.02 1.08 16 15 C 0.00 0.24 5.47 84.65 0.46 0.71 16 16 N -0.95 -61.53 13.96 21.45 0.30 -61.23 16 17 Si 0.96 44.19 27.47 68.60 1.88 46.07 16 18 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.24 -10.02 6.54 99.48 0.65 -9.37 16 21 C -0.15 -4.54 9.44 22.68 0.21 -4.33 16 22 C 0.20 4.71 6.73 38.17 0.26 4.97 16 23 N -0.86 -12.74 8.99 -51.45 -0.46 -13.20 16 24 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 26 H 0.08 0.65 6.51 -2.38 -0.02 0.63 16 27 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 28 H 0.13 4.26 7.60 -2.91 -0.02 4.23 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.04 1.81 7.20 -2.39 -0.02 1.79 16 33 H 0.05 2.42 7.57 -2.38 -0.02 2.40 16 34 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 35 H 0.13 3.91 7.65 -2.91 -0.02 3.89 16 36 H 0.41 3.83 6.80 -92.71 -0.63 3.20 16 37 H 0.41 5.13 8.84 -92.71 -0.82 4.31 16 Total: -1.00 -78.05 315.39 4.61 -73.44 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -0.41 Total: 18.10 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 3.49 Total: -21.55 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -0.16 Total: -74.43 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -0.19 Total: -41.63 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.07 kcal Total: -78.05 4.61 -73.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.043 kcal (2) G-P(sol) polarization free energy of solvation -78.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds