Wall clock time and date at job start Mon Mar 30 2020 07:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38005 * 120.00165 * 2 1 4 4 C 1.38214 * 120.23472 * 180.27872 * 3 2 1 5 5 C 1.39024 * 120.22913 * 359.76218 * 4 3 2 6 6 N 1.39715 * 120.00377 * 179.97438 * 5 4 3 7 7 C 1.38633 * 119.99541 * 359.97438 * 5 4 3 8 8 C 1.39544 * 119.77091 * 359.97438 * 7 5 4 9 9 C 1.47745 * 120.11611 * 180.02562 * 8 7 5 10 10 O 1.21464 * 119.99762 * 173.76835 * 9 8 7 11 11 O 1.34708 * 119.99774 * 353.77038 * 9 8 7 12 12 C 1.45201 * 116.99928 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46633 * 329.99722 * 12 11 9 14 14 C 1.52995 * 109.47257 * 89.99363 * 12 11 9 15 15 C 1.52998 * 109.47128 * 209.99812 * 12 11 9 16 16 C 1.50705 * 109.47223 * 65.00112 * 15 12 11 17 17 H 1.08004 * 119.99588 * 359.97438 * 16 15 12 18 18 C 1.37872 * 119.99968 * 180.02562 * 16 15 12 19 19 N 1.31517 * 120.00232 * 359.72461 * 18 16 15 20 20 Si 1.86801 * 119.99904 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47164 * 179.72602 * 20 18 16 22 22 H 1.48506 * 109.46907 * 299.72395 * 20 18 16 23 23 H 1.48498 * 109.47102 * 59.72284 * 20 18 16 24 24 H 1.08997 * 109.47022 * 263.63706 * 1 2 3 25 25 H 1.08998 * 109.46713 * 23.63536 * 1 2 3 26 26 H 1.08997 * 109.47233 * 143.63210 * 1 2 3 27 27 H 1.08009 * 119.88710 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.88555 * 179.74686 * 4 3 2 29 29 H 0.97003 * 119.99946 * 180.02562 * 6 5 4 30 30 H 0.96993 * 119.99696 * 0.02562 * 6 5 4 31 31 H 1.08004 * 120.11576 * 180.02562 * 7 5 4 32 32 H 1.09002 * 109.47005 * 60.00588 * 14 12 11 33 33 H 1.09000 * 109.47473 * 180.02562 * 14 12 11 34 34 H 1.09000 * 109.47514 * 300.00003 * 14 12 11 35 35 H 1.08998 * 109.46853 * 304.99678 * 15 12 11 36 36 H 1.09004 * 109.47044 * 184.99721 * 15 12 11 37 37 H 0.97000 * 119.99369 * 0.26898 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1951 0.0000 4 6 3.5793 1.2008 -0.0058 5 6 4.2841 0.0024 -0.0067 6 7 5.6812 0.0136 -0.0131 7 6 3.6005 -1.2037 -0.0012 8 6 2.2051 -1.2092 0.0057 9 6 1.4690 -2.4902 0.0122 10 8 0.2603 -2.4954 0.1324 11 8 2.1382 -3.6523 -0.1152 12 6 1.3502 -4.8718 -0.1010 13 1 0.4614 -4.7228 0.5122 14 6 0.9310 -5.2248 -1.5294 15 6 2.1866 -6.0126 0.4818 16 6 2.4959 -5.7210 1.9277 17 1 2.1326 -4.8124 2.3849 18 6 3.2435 -6.6134 2.6663 19 7 3.6822 -7.7218 2.1107 20 14 3.6275 -6.2514 4.4583 21 1 4.4340 -7.3617 5.0257 22 1 4.3944 -4.9833 4.5538 23 1 2.3592 -6.1215 5.2198 24 1 -0.3633 -0.1139 1.0213 25 1 -0.3633 0.9415 -0.4120 26 1 -0.3633 -0.8275 -0.6094 27 1 1.6553 2.1295 0.0004 28 1 4.1136 2.1393 -0.0099 29 1 6.1729 -0.8225 -0.0141 30 1 6.1593 0.8575 -0.0166 31 1 4.1461 -2.1358 -0.0015 32 1 1.8199 -5.3738 -2.1426 33 1 0.3391 -6.1400 -1.5187 34 1 0.3351 -4.4121 -1.9447 35 1 3.1176 -6.1033 -0.0778 36 1 1.6277 -6.9458 0.4110 37 1 3.4830 -7.9095 1.1802 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695812642.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:53 Heat of formation + Delta-G solvation = -79.305274 kcal Electronic energy + Delta-G solvation = -19703.945536 eV Core-core repulsion = 16638.425879 eV Total energy + Delta-G solvation = -3065.519657 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.28993 -38.86823 -36.38305 -34.76327 -33.70513 -31.82187 -30.86124 -30.57518 -27.08857 -26.01422 -24.19953 -23.11022 -21.98128 -20.59921 -19.90867 -17.84662 -17.02335 -16.77135 -16.28929 -15.48198 -15.46359 -14.78023 -14.32523 -13.76864 -13.69189 -13.54214 -13.15068 -13.04496 -12.88273 -12.53476 -12.12445 -11.77622 -11.61876 -11.55261 -11.32474 -11.25578 -10.95708 -10.65498 -10.35868 -10.11038 -9.89825 -9.70591 -9.52824 -8.95571 -8.54950 -8.34510 -7.47286 -6.36675 -4.05007 0.92564 1.56568 2.97549 3.28444 3.45294 3.47020 3.65683 3.81554 3.95577 4.54981 4.79822 4.98451 5.11665 5.28214 5.40508 5.45145 5.61037 5.63336 5.73276 5.84947 5.88274 5.98482 5.99267 6.20364 6.25618 6.28200 6.40709 6.47950 6.62167 6.69294 6.77863 7.09321 7.19870 7.41774 7.46103 7.70456 8.14582 8.37959 8.45092 8.86862 9.64795 11.04080 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.006026 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.369108 B = 4645.083206 C = 5409.155780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.081 4.081 3 C -0.090 4.090 4 C -0.166 4.166 5 C 0.195 3.805 6 N -0.879 5.879 7 C -0.132 4.132 8 C -0.073 4.073 9 C 0.501 3.499 10 O -0.511 6.511 11 O -0.329 6.329 12 C 0.100 3.900 13 H 0.076 0.924 14 C -0.167 4.167 15 C 0.011 3.989 16 C -0.595 4.595 17 H 0.048 0.952 18 C 0.016 3.984 19 N -0.913 5.913 20 Si 1.067 2.933 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.288 1.288 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.089 0.911 27 H 0.127 0.873 28 H 0.122 0.878 29 H 0.401 0.599 30 H 0.396 0.604 31 H 0.140 0.860 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.020 0.980 36 H 0.030 0.970 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 16.991 -6.406 18.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.108 4.108 4 C -0.189 4.189 5 C 0.091 3.909 6 N -0.419 5.419 7 C -0.155 4.155 8 C -0.075 4.075 9 C 0.346 3.654 10 O -0.402 6.402 11 O -0.245 6.245 12 C 0.046 3.954 13 H 0.094 0.906 14 C -0.225 4.225 15 C -0.026 4.026 16 C -0.633 4.633 17 H 0.066 0.934 18 C -0.187 4.187 19 N -0.549 5.549 20 Si 0.895 3.105 21 H -0.207 1.207 22 H -0.214 1.214 23 H -0.214 1.214 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.107 0.893 27 H 0.145 0.855 28 H 0.140 0.860 29 H 0.230 0.770 30 H 0.224 0.776 31 H 0.158 0.842 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.038 0.962 36 H 0.048 0.952 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.681 16.322 -5.034 17.094 hybrid contribution -0.401 0.590 -1.311 1.493 sum 0.280 16.913 -6.346 18.066 Atomic orbital electron populations 1.20971 0.90312 1.02385 1.03298 1.19778 0.96674 0.91147 1.00706 1.20669 0.93281 0.97071 0.99818 1.20738 0.94381 0.96223 1.07581 1.17642 0.84425 0.93398 0.95448 1.42417 1.02883 1.10921 1.85703 1.20993 0.93262 0.97441 1.03823 1.18846 0.92822 0.90471 1.05358 1.21148 0.85920 0.85272 0.73015 1.90710 1.15207 1.87890 1.46428 1.86635 1.41724 1.14551 1.81590 1.22968 0.95168 0.81761 0.95489 0.90553 1.22248 1.01387 1.01567 0.97285 1.19415 0.95014 0.91174 0.97012 1.21939 1.37279 1.08381 0.95680 0.93381 1.25800 0.93751 0.93311 1.05836 1.70803 1.44279 1.24689 1.15176 0.83574 0.76513 0.75747 0.74676 1.20713 1.21431 1.21408 0.91153 0.92824 0.89282 0.85469 0.85971 0.77044 0.77587 0.84204 0.92184 0.91160 0.93149 0.96188 0.95201 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 8.72 36.01 0.31 -1.26 16 2 C -0.08 -1.19 5.92 -104.19 -0.62 -1.81 16 3 C -0.09 -1.07 9.65 -39.68 -0.38 -1.45 16 4 C -0.17 -1.87 9.89 -39.30 -0.39 -2.26 16 5 C 0.19 2.46 6.75 -83.83 -0.57 1.89 16 6 N -0.88 -8.33 9.09 32.39 0.29 -8.03 16 7 C -0.13 -2.07 9.46 -38.95 -0.37 -2.44 16 8 C -0.07 -1.26 5.87 -105.01 -0.62 -1.87 16 9 C 0.50 10.14 7.80 34.62 0.27 10.41 16 10 O -0.51 -10.76 12.60 -19.24 -0.24 -11.01 16 11 O -0.33 -7.26 8.91 -40.51 -0.36 -7.62 16 12 C 0.10 2.24 2.51 -26.73 -0.07 2.18 16 13 H 0.08 1.80 7.16 -51.93 -0.37 1.43 16 14 C -0.17 -3.06 9.55 37.15 0.35 -2.70 16 15 C 0.01 0.27 4.00 -27.88 -0.11 0.16 16 16 C -0.59 -17.24 8.89 -34.44 -0.31 -17.55 16 17 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 18 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 19 N -0.91 -27.94 13.65 55.43 0.76 -27.18 16 20 Si 1.07 25.84 29.90 -169.99 -5.08 20.76 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.05 0.58 8.04 -51.93 -0.42 0.17 16 26 H 0.09 1.41 5.86 -51.93 -0.30 1.10 16 27 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 28 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.40 3.57 8.84 -40.82 -0.36 3.21 16 30 H 0.40 2.71 8.84 -40.82 -0.36 2.35 16 31 H 0.14 2.29 7.63 -52.48 -0.40 1.89 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.02 0.53 8.01 -51.93 -0.42 0.12 16 36 H 0.03 0.78 8.00 -51.93 -0.42 0.37 16 37 H 0.27 8.10 7.22 -40.82 -0.29 7.80 16 LS Contribution 315.96 15.07 4.76 4.76 Total: -1.00 -32.88 315.96 -7.54 -40.42 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.08 Total: 4.22 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -2.58 Total: -16.31 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 1.05 Total: -35.21 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.60 Total: -18.63 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.08 Total: 20.76 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.88 -7.54 -40.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812642.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.890 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds