Wall clock time and date at job start Mon Mar 30 2020 07:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38005 * 120.00165 * 2 1 4 4 C 1.38214 * 120.23472 * 180.27872 * 3 2 1 5 5 C 1.39024 * 120.22913 * 359.76218 * 4 3 2 6 6 N 1.39715 * 120.00377 * 179.97438 * 5 4 3 7 7 C 1.38633 * 119.99541 * 359.97438 * 5 4 3 8 8 C 1.39544 * 119.77091 * 359.97438 * 7 5 4 9 9 C 1.47745 * 120.11611 * 180.02562 * 8 7 5 10 10 O 1.21464 * 119.99762 * 173.76835 * 9 8 7 11 11 O 1.34708 * 119.99774 * 353.77038 * 9 8 7 12 12 C 1.45201 * 116.99928 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46633 * 329.99722 * 12 11 9 14 14 C 1.52995 * 109.47257 * 89.99363 * 12 11 9 15 15 C 1.52998 * 109.47128 * 209.99812 * 12 11 9 16 16 C 1.50705 * 109.47223 * 65.00112 * 15 12 11 17 17 H 1.08004 * 119.99588 * 359.97438 * 16 15 12 18 18 C 1.37872 * 119.99968 * 180.02562 * 16 15 12 19 19 N 1.31517 * 120.00232 * 359.72461 * 18 16 15 20 20 Si 1.86801 * 119.99904 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47164 * 179.72602 * 20 18 16 22 22 H 1.48506 * 109.46907 * 299.72395 * 20 18 16 23 23 H 1.48498 * 109.47102 * 59.72284 * 20 18 16 24 24 H 1.08997 * 109.47022 * 263.63706 * 1 2 3 25 25 H 1.08998 * 109.46713 * 23.63536 * 1 2 3 26 26 H 1.08997 * 109.47233 * 143.63210 * 1 2 3 27 27 H 1.08009 * 119.88710 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.88555 * 179.74686 * 4 3 2 29 29 H 0.97003 * 119.99946 * 180.02562 * 6 5 4 30 30 H 0.96993 * 119.99696 * 0.02562 * 6 5 4 31 31 H 1.08004 * 120.11576 * 180.02562 * 7 5 4 32 32 H 1.09002 * 109.47005 * 60.00588 * 14 12 11 33 33 H 1.09000 * 109.47473 * 180.02562 * 14 12 11 34 34 H 1.09000 * 109.47514 * 300.00003 * 14 12 11 35 35 H 1.08998 * 109.46853 * 304.99678 * 15 12 11 36 36 H 1.09004 * 109.47044 * 184.99721 * 15 12 11 37 37 H 0.97000 * 119.99369 * 0.26898 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1951 0.0000 4 6 3.5793 1.2008 -0.0058 5 6 4.2841 0.0024 -0.0067 6 7 5.6812 0.0136 -0.0131 7 6 3.6005 -1.2037 -0.0012 8 6 2.2051 -1.2092 0.0057 9 6 1.4690 -2.4902 0.0122 10 8 0.2603 -2.4954 0.1324 11 8 2.1382 -3.6523 -0.1152 12 6 1.3502 -4.8718 -0.1010 13 1 0.4614 -4.7228 0.5122 14 6 0.9310 -5.2248 -1.5294 15 6 2.1866 -6.0126 0.4818 16 6 2.4959 -5.7210 1.9277 17 1 2.1326 -4.8124 2.3849 18 6 3.2435 -6.6134 2.6663 19 7 3.6822 -7.7218 2.1107 20 14 3.6275 -6.2514 4.4583 21 1 4.4340 -7.3617 5.0257 22 1 4.3944 -4.9833 4.5538 23 1 2.3592 -6.1215 5.2198 24 1 -0.3633 -0.1139 1.0213 25 1 -0.3633 0.9415 -0.4120 26 1 -0.3633 -0.8275 -0.6094 27 1 1.6553 2.1295 0.0004 28 1 4.1136 2.1393 -0.0099 29 1 6.1729 -0.8225 -0.0141 30 1 6.1593 0.8575 -0.0166 31 1 4.1461 -2.1358 -0.0015 32 1 1.8199 -5.3738 -2.1426 33 1 0.3391 -6.1400 -1.5187 34 1 0.3351 -4.4121 -1.9447 35 1 3.1176 -6.1033 -0.0778 36 1 1.6277 -6.9458 0.4110 37 1 3.4830 -7.9095 1.1802 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695812642.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:53 Heat of formation + Delta-G solvation = -99.579498 kcal Electronic energy + Delta-G solvation = -19704.824692 eV Core-core repulsion = 16638.425879 eV Total energy + Delta-G solvation = -3066.398814 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.73078 -40.09515 -37.99292 -35.87067 -35.70368 -33.57813 -32.12113 -31.56951 -29.06632 -27.11713 -25.56044 -25.03565 -23.34187 -21.95097 -21.47364 -19.25507 -19.01562 -18.03528 -17.55601 -17.08503 -16.54247 -16.06462 -15.68559 -15.43716 -15.29908 -14.79074 -14.64537 -14.53986 -14.46075 -13.65048 -13.52353 -13.47189 -13.19153 -13.05431 -12.83341 -12.68145 -12.56022 -12.32988 -11.98494 -11.72909 -11.54705 -11.32467 -11.06460 -10.69754 -10.59615 -10.02243 -8.72890 -8.41662 -6.42089 -0.26064 0.54046 1.47825 1.55453 1.58884 1.75870 1.76894 2.51598 2.83399 2.97300 3.11859 3.62757 3.88259 3.91693 4.07161 4.08110 4.21930 4.26232 4.40485 4.63155 4.65280 4.79601 4.84197 4.86057 4.91374 4.94513 5.07804 5.11714 5.17072 5.25179 5.38214 5.57343 5.68559 5.85988 5.89861 6.10373 6.52241 6.53289 6.78615 7.01328 7.35414 8.68784 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.006026 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.369108 B = 4645.083206 C = 5409.155780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.094 4.094 3 C -0.079 4.079 4 C -0.152 4.152 5 C 0.198 3.802 6 N -0.867 5.867 7 C -0.158 4.158 8 C -0.103 4.103 9 C 0.493 3.507 10 O -0.529 6.529 11 O -0.346 6.346 12 C 0.103 3.897 13 H 0.058 0.942 14 C -0.156 4.156 15 C 0.014 3.986 16 C -0.611 4.611 17 H 0.035 0.965 18 C -0.031 4.031 19 N -0.932 5.932 20 Si 1.111 2.889 21 H -0.275 1.275 22 H -0.272 1.272 23 H -0.273 1.273 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.166 0.834 28 H 0.164 0.836 29 H 0.403 0.597 30 H 0.412 0.588 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.005 0.995 36 H 0.024 0.976 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.981 20.083 -6.223 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.096 4.096 3 C -0.097 4.097 4 C -0.174 4.174 5 C 0.092 3.908 6 N -0.408 5.408 7 C -0.181 4.181 8 C -0.105 4.105 9 C 0.340 3.660 10 O -0.421 6.421 11 O -0.262 6.262 12 C 0.048 3.952 13 H 0.076 0.924 14 C -0.213 4.213 15 C -0.023 4.023 16 C -0.649 4.649 17 H 0.053 0.947 18 C -0.229 4.229 19 N -0.569 5.569 20 Si 0.932 3.068 21 H -0.200 1.200 22 H -0.198 1.198 23 H -0.198 1.198 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.081 0.919 27 H 0.184 0.816 28 H 0.181 0.819 29 H 0.232 0.768 30 H 0.243 0.757 31 H 0.136 0.864 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.024 0.976 36 H 0.042 0.958 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.377 19.435 -4.877 20.085 hybrid contribution -0.569 -0.267 -1.407 1.541 sum 0.808 19.168 -6.284 20.188 Atomic orbital electron populations 1.20906 0.90126 1.03174 1.02367 1.20009 0.97065 0.91308 1.01236 1.21095 0.93770 0.97193 0.97638 1.21216 0.94351 0.97038 1.04792 1.17742 0.85668 0.92875 0.94500 1.42412 1.01789 1.12081 1.84481 1.20874 0.92886 0.98106 1.06283 1.18873 0.93493 0.89545 1.08542 1.21867 0.86129 0.85628 0.72334 1.90689 1.15892 1.88072 1.47449 1.86617 1.42297 1.15115 1.82178 1.22739 0.93536 0.81329 0.97586 0.92401 1.22150 1.02071 1.02632 0.94487 1.19290 0.94770 0.92469 0.95730 1.22232 1.37385 1.07925 0.97340 0.94693 1.27271 0.93174 0.92649 1.09792 1.70921 1.45453 1.25668 1.14850 0.83017 0.77286 0.76377 0.70100 1.20031 1.19759 1.19795 0.92163 0.89325 0.91870 0.81642 0.81876 0.76780 0.75660 0.86356 0.91371 0.89577 0.92042 0.97623 0.95837 0.93270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.94 8.72 71.24 0.62 -2.32 16 2 C -0.09 -2.64 5.92 -19.58 -0.12 -2.76 16 3 C -0.08 -1.57 9.65 22.21 0.21 -1.35 16 4 C -0.15 -2.76 9.89 22.45 0.22 -2.54 16 5 C 0.20 4.57 6.75 38.17 0.26 4.83 16 6 N -0.87 -14.26 9.09 -51.44 -0.47 -14.73 16 7 C -0.16 -5.00 9.46 22.68 0.21 -4.79 16 8 C -0.10 -3.59 5.87 -20.11 -0.12 -3.71 16 9 C 0.49 20.90 7.80 70.34 0.55 21.45 16 10 O -0.53 -23.30 12.60 19.95 0.25 -23.05 16 11 O -0.35 -16.05 8.91 -56.18 -0.50 -16.55 16 12 C 0.10 4.78 2.51 30.59 0.08 4.86 16 13 H 0.06 2.87 7.16 -2.39 -0.02 2.85 16 14 C -0.16 -5.77 9.55 71.98 0.69 -5.08 16 15 C 0.01 0.77 4.00 29.85 0.12 0.89 16 16 C -0.61 -36.60 8.89 25.60 0.23 -36.37 16 17 H 0.03 2.13 7.74 -2.91 -0.02 2.11 16 18 C -0.03 -1.83 5.46 84.65 0.46 -1.37 16 19 N -0.93 -58.09 13.65 21.45 0.29 -57.80 16 20 Si 1.11 52.09 29.90 68.60 2.05 54.14 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.09 1.69 8.04 -2.39 -0.02 1.67 16 26 H 0.06 2.03 5.86 -2.39 -0.01 2.01 16 27 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 28 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 29 H 0.40 6.59 8.84 -92.71 -0.82 5.77 16 30 H 0.41 4.14 8.84 -92.71 -0.82 3.32 16 31 H 0.12 4.12 7.63 -2.91 -0.02 4.10 16 32 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.01 0.31 8.01 -2.39 -0.02 0.29 16 36 H 0.02 1.28 8.00 -2.38 -0.02 1.27 16 37 H 0.26 16.10 7.22 -92.71 -0.67 15.43 16 Total: -1.00 -73.83 315.96 4.60 -69.23 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -0.45 Total: 17.03 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: 3.42 Total: -28.27 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -0.17 Total: -72.52 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -0.25 Total: -39.60 kcal Atomic # 14 Polarization: 52.09 SS G_CDS: 2.05 Total: 54.14 kcal Total: -73.83 4.60 -69.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812642.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.353 kcal (2) G-P(sol) polarization free energy of solvation -73.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds