Wall clock time and date at job start Mon Mar 30 2020 07:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37646 * 120.02462 * 2 1 4 4 C 1.39865 * 119.79581 * 179.68231 * 3 2 1 5 5 C 1.47384 * 120.07138 * 180.30429 * 4 3 2 6 6 O 1.21516 * 120.00128 * 0.24440 * 5 4 3 7 7 O 1.34753 * 119.99675 * 180.25220 * 5 4 3 8 8 C 1.45209 * 116.99910 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.46688 * 329.99704 * 8 7 5 10 10 C 1.52996 * 109.46908 * 89.99769 * 8 7 5 11 11 C 1.53002 * 109.47041 * 209.99832 * 8 7 5 12 12 C 1.50701 * 109.46833 * 65.00349 * 11 8 7 13 13 H 1.07997 * 120.00555 * 359.97438 * 12 11 8 14 14 C 1.37885 * 119.99553 * 179.97438 * 12 11 8 15 15 N 1.31511 * 119.99714 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99705 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46978 * 60.00568 * 16 14 12 18 18 H 1.48502 * 109.46823 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47496 * 300.00030 * 16 14 12 20 20 C 1.39851 * 119.85454 * 0.55041 * 4 3 2 21 21 C 1.36579 * 120.04974 * 359.47102 * 20 4 3 22 22 C 1.39237 * 120.02998 * 179.97438 * 2 1 3 23 23 N 1.39012 * 119.92272 * 0.02562 * 22 2 1 24 24 H 1.09001 * 109.47033 * 270.01763 * 1 2 3 25 25 H 1.09001 * 109.47328 * 30.02259 * 1 2 3 26 26 H 1.09002 * 109.47172 * 150.01862 * 1 2 3 27 27 H 1.07992 * 120.10263 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.46916 * 180.02562 * 10 8 7 29 29 H 1.09000 * 109.47431 * 300.00301 * 10 8 7 30 30 H 1.08997 * 109.47499 * 60.00432 * 10 8 7 31 31 H 1.09000 * 109.46580 * 184.99434 * 11 8 7 32 32 H 1.08996 * 109.47145 * 304.99514 * 11 8 7 33 33 H 0.97000 * 119.99554 * 179.97438 * 15 14 12 34 34 H 1.08002 * 119.97817 * 179.75231 * 20 4 3 35 35 H 1.07997 * 119.89774 * 180.27361 * 21 20 4 36 36 H 0.97002 * 119.99705 * 180.02562 * 23 22 2 37 37 H 0.96995 * 119.99807 * 0.02562 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1918 0.0000 4 6 3.5943 1.1862 0.0067 5 6 4.3379 2.4587 0.0135 6 8 3.7358 3.5142 0.0178 7 8 5.6854 2.4516 0.0149 8 6 6.3514 3.7419 0.0211 9 1 5.7277 4.4751 -0.4902 10 6 6.5838 4.1888 1.4658 11 6 7.6962 3.6252 -0.6992 12 6 7.4611 3.3049 -2.1529 13 1 6.4535 3.1951 -2.5257 14 6 8.5327 3.1520 -3.0071 15 7 9.7597 3.2852 -2.5531 16 14 8.2414 2.7543 -4.8089 17 1 7.4382 3.8373 -5.4312 18 1 9.5466 2.6412 -5.5081 19 1 7.5079 1.4679 -4.9197 20 6 4.2857 -0.0295 0.0018 21 6 3.5962 -1.2084 0.0013 22 6 2.2038 -1.2055 0.0005 23 7 1.5077 -2.4088 0.0005 24 1 -0.3633 0.0003 1.0277 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6578 2.1282 0.0004 28 1 7.0833 5.1576 1.4705 29 1 5.6258 4.2719 1.9790 30 1 7.2075 3.4556 1.9771 31 1 8.2351 4.5691 -0.6177 32 1 8.2852 2.8299 -0.2425 33 1 10.5135 3.1773 -3.1539 34 1 5.3657 -0.0361 0.0029 35 1 4.1325 -2.1458 0.0019 36 1 1.9921 -3.2492 0.0013 37 1 0.5378 -2.4079 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695812760.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:52 Heat of formation + Delta-G solvation = -80.527385 kcal Electronic energy + Delta-G solvation = -19358.544308 eV Core-core repulsion = 16292.971656 eV Total energy + Delta-G solvation = -3065.572652 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.11460 -39.04102 -36.06678 -34.66152 -33.31974 -32.66691 -31.44326 -29.27374 -27.38343 -26.95932 -23.94871 -23.00655 -21.97701 -20.60672 -19.52745 -17.48636 -17.28783 -16.78679 -16.30470 -15.90509 -15.13458 -14.49728 -14.25713 -14.09528 -14.04402 -13.28133 -13.17709 -12.97879 -12.61628 -12.44199 -12.20198 -11.96958 -11.80843 -11.43679 -11.34115 -10.96070 -10.80260 -10.70288 -10.63290 -10.28206 -9.92091 -9.75106 -9.27625 -8.99105 -8.82655 -8.34683 -7.63121 -5.98165 -3.99243 1.11205 1.47257 3.05718 3.37256 3.40386 3.44735 3.48178 3.63536 4.03833 4.49446 4.78126 4.78928 5.11806 5.29760 5.39139 5.42719 5.45672 5.51901 5.59959 5.81037 5.85635 5.90954 6.05677 6.14516 6.26132 6.33491 6.47330 6.60921 6.65818 6.76773 6.82413 7.23509 7.28267 7.47839 7.56701 7.74767 7.98687 8.38419 8.55935 9.04043 9.63777 11.13196 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019675 B = 0.005105 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.804499 B = 5483.329612 C = 6221.688051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.187 4.187 3 C -0.008 4.008 4 C -0.176 4.176 5 C 0.507 3.493 6 O -0.530 6.530 7 O -0.332 6.332 8 C 0.093 3.907 9 H 0.074 0.926 10 C -0.166 4.166 11 C 0.024 3.976 12 C -0.514 4.514 13 H 0.054 0.946 14 C 0.059 3.941 15 N -0.897 5.897 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.012 4.012 21 C -0.210 4.210 22 C 0.244 3.756 23 N -0.870 5.870 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.134 0.866 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.029 0.971 33 H 0.261 0.739 34 H 0.142 0.858 35 H 0.126 0.874 36 H 0.399 0.601 37 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.920 -10.567 7.132 20.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.192 4.192 3 C -0.027 4.027 4 C -0.179 4.179 5 C 0.353 3.647 6 O -0.422 6.422 7 O -0.247 6.247 8 C 0.039 3.961 9 H 0.092 0.908 10 C -0.224 4.224 11 C -0.012 4.012 12 C -0.552 4.552 13 H 0.072 0.928 14 C -0.142 4.142 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.031 4.031 21 C -0.232 4.232 22 C 0.138 3.862 23 N -0.409 5.409 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.152 0.848 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.160 0.840 35 H 0.144 0.856 36 H 0.228 0.772 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -15.840 -10.218 7.078 20.135 hybrid contribution -0.183 -0.460 -1.073 1.181 sum -16.023 -10.678 6.005 20.169 Atomic orbital electron populations 1.20548 0.91004 1.02383 1.01839 1.19200 0.95856 0.91313 1.12803 1.20896 0.92209 0.97664 0.91903 1.19002 0.93008 0.91421 1.14451 1.21008 0.82320 0.88964 0.72411 1.90743 1.70146 1.33423 1.47850 1.86638 1.18552 1.37159 1.82365 1.23157 0.96140 0.81413 0.95398 0.90805 1.22226 1.01203 1.01804 0.97118 1.19302 0.88565 0.98477 0.94891 1.21096 0.92693 1.47868 0.93575 0.92792 1.24960 0.95112 0.95438 0.98710 1.69941 0.97913 1.50266 1.35505 0.86659 0.77247 0.79065 0.85096 1.20236 1.21266 1.20201 1.21065 1.01015 0.90592 0.90391 1.20308 0.91641 0.98980 1.12304 1.17817 0.91370 0.86094 0.90961 1.42507 1.09247 1.05324 1.83772 0.91697 0.91256 0.92405 0.84781 0.91209 0.93429 0.92156 0.94255 0.95237 0.92919 0.84031 0.85562 0.77248 0.77213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 9.57 36.00 0.34 -0.51 16 2 C -0.19 -2.22 5.89 -104.47 -0.62 -2.83 16 3 C -0.01 -0.11 9.24 -39.19 -0.36 -0.48 16 4 C -0.18 -3.00 5.88 -104.96 -0.62 -3.61 16 5 C 0.51 10.48 7.86 34.45 0.27 10.75 16 6 O -0.53 -11.81 15.60 -19.28 -0.30 -12.11 16 7 O -0.33 -7.38 8.88 -40.64 -0.36 -7.74 16 8 C 0.09 2.11 2.51 -26.73 -0.07 2.04 16 9 H 0.07 1.76 7.16 -51.93 -0.37 1.39 16 10 C -0.17 -3.11 9.55 37.16 0.35 -2.76 16 11 C 0.02 0.64 4.69 -27.88 -0.13 0.51 16 12 C -0.51 -14.89 8.89 -34.44 -0.31 -15.20 16 13 H 0.05 1.57 7.74 -52.49 -0.41 1.17 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 16 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C -0.01 -0.18 9.56 -39.58 -0.38 -0.56 16 21 C -0.21 -2.58 9.82 -39.81 -0.39 -2.97 16 22 C 0.24 2.71 6.73 -83.86 -0.56 2.15 16 23 N -0.87 -6.28 8.96 32.41 0.29 -5.99 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 26 H 0.06 0.38 6.54 -51.93 -0.34 0.04 16 27 H 0.13 1.92 7.64 -52.49 -0.40 1.51 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.14 2.20 7.60 -52.49 -0.40 1.80 16 35 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.40 2.14 8.83 -40.82 -0.36 1.78 16 37 H 0.40 2.18 6.80 -40.82 -0.28 1.90 16 LS Contribution 318.83 15.07 4.80 4.80 Total: -1.00 -33.24 318.83 -7.48 -40.72 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.07 Total: 1.22 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -2.56 Total: -11.85 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 1.03 Total: -32.19 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.66 Total: -19.85 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.24 -7.48 -40.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695812760.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.806 kcal (2) G-P(sol) polarization free energy of solvation -33.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds