Wall clock time and date at job start Mon Mar 30 2020 07:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37766 * 120.03459 * 2 1 4 4 C 1.38593 * 120.35715 * 179.74419 * 3 2 1 5 5 C 1.37982 * 120.43620 * 0.23344 * 4 3 2 6 6 C 1.38916 * 120.07060 * 0.02562 * 5 4 3 7 7 N 1.38843 * 120.18069 * 180.02562 * 6 5 4 8 8 C 1.39752 * 120.04240 * 180.23184 * 2 1 3 9 9 C 1.47295 * 120.21596 * 359.97438 * 8 2 1 10 10 O 1.21521 * 119.99858 * 270.29723 * 9 8 2 11 11 O 1.34767 * 119.99836 * 90.29235 * 9 8 2 12 12 C 1.45202 * 116.99511 * 179.97438 * 11 9 8 13 13 H 1.08991 * 109.47556 * 330.00485 * 12 11 9 14 14 C 1.53005 * 109.46713 * 90.00609 * 12 11 9 15 15 C 1.53003 * 109.46687 * 210.00034 * 12 11 9 16 16 C 1.50703 * 109.47131 * 65.00741 * 15 12 11 17 17 H 1.07996 * 119.99513 * 359.97438 * 16 15 12 18 18 C 1.37870 * 119.99868 * 179.97438 * 16 15 12 19 19 N 1.31512 * 120.00295 * 0.02562 * 18 16 15 20 20 Si 1.86810 * 119.99864 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46793 * 60.00229 * 20 18 16 22 22 H 1.48502 * 109.46900 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46894 * 300.00291 * 20 18 16 24 24 H 1.08999 * 109.47265 * 90.00259 * 1 2 3 25 25 H 1.09004 * 109.46578 * 209.99653 * 1 2 3 26 26 H 1.08995 * 109.47540 * 329.99485 * 1 2 3 27 27 H 1.08002 * 119.82440 * 0.02695 * 3 2 1 28 28 H 1.08001 * 119.77828 * 180.25892 * 4 3 2 29 29 H 1.08003 * 119.96377 * 180.02562 * 5 4 3 30 30 H 0.97000 * 119.99887 * 0.02562 * 7 6 5 31 31 H 0.97001 * 120.00190 * 179.97438 * 7 6 5 32 32 H 1.08995 * 109.46902 * 299.99241 * 14 12 11 33 33 H 1.09000 * 109.47049 * 59.99924 * 14 12 11 34 34 H 1.09001 * 109.46790 * 179.97438 * 14 12 11 35 35 H 1.09004 * 109.46712 * 185.00433 * 15 12 11 36 36 H 1.08990 * 109.47456 * 305.00061 * 15 12 11 37 37 H 0.97006 * 119.99932 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1927 0.0000 4 6 3.5824 1.2005 0.0053 5 6 4.2881 0.0148 0.0059 6 6 3.6111 -1.1982 0.0005 7 7 4.3188 -2.3927 0.0016 8 6 2.2066 -1.2098 -0.0049 9 6 1.4759 -2.4887 -0.0095 10 8 1.1702 -3.0175 1.0410 11 8 1.1464 -3.0722 -1.1787 12 6 0.4272 -4.3316 -1.1072 13 1 0.7131 -4.8622 -0.1991 14 6 -1.0781 -4.0587 -1.0860 15 6 0.7735 -5.1865 -2.3279 16 6 2.2333 -5.5581 -2.2833 17 1 2.8522 -5.2180 -1.4663 18 6 2.7786 -6.3320 -3.2856 19 7 2.0249 -6.7457 -4.2808 20 14 4.5883 -6.7920 -3.2306 21 1 4.8659 -7.5619 -1.9916 22 1 4.9243 -7.6218 -4.4154 23 1 5.4133 -5.5573 -3.2416 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3632 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6542 2.1267 0.0004 28 1 4.1135 2.1409 0.0095 29 1 5.3680 0.0298 0.0105 30 1 5.2888 -2.3817 0.0064 31 1 3.8434 -3.2382 -0.0018 32 1 -1.3247 -3.4496 -0.2164 33 1 -1.3640 -3.5281 -1.9942 34 1 -1.6180 -5.0041 -1.0328 35 1 0.1675 -6.0926 -2.3205 36 1 0.5701 -4.6210 -3.2371 37 1 2.4087 -7.2899 -4.9861 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695813252.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:57 Heat of formation + Delta-G solvation = -81.705250 kcal Electronic energy + Delta-G solvation = -20023.191251 eV Core-core repulsion = 16957.567523 eV Total energy + Delta-G solvation = -3065.623728 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.32741 -38.73070 -36.06820 -34.94000 -33.40906 -32.35642 -31.48074 -29.10966 -27.48565 -26.92966 -24.23811 -23.14388 -21.33706 -20.89028 -19.72485 -17.67128 -16.98741 -16.57925 -16.38569 -16.14696 -15.03158 -14.71339 -14.37451 -14.11116 -13.82689 -13.43488 -13.07544 -12.98298 -12.56237 -12.33710 -12.19016 -11.91085 -11.75711 -11.45386 -11.41519 -11.22375 -10.86069 -10.79525 -10.48873 -10.39241 -10.03885 -9.87623 -9.39521 -9.09010 -8.68799 -8.43183 -7.49374 -6.06313 -4.08231 1.26657 1.65627 2.60459 3.28051 3.33007 3.34026 3.36366 3.85479 3.91460 4.39933 4.81355 4.92417 5.18196 5.31408 5.34441 5.40985 5.50610 5.66600 5.71396 5.77382 5.81298 5.86353 6.00852 6.09798 6.22706 6.31310 6.47828 6.56402 6.62753 6.71550 6.87241 7.09569 7.46471 7.50274 7.64299 7.78218 7.89409 8.27422 8.38303 8.93425 9.54467 11.05031 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019201 B = 0.006635 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.891579 B = 4218.967541 C = 5217.056578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.003 3.997 3 C -0.189 4.189 4 C -0.050 4.050 5 C -0.211 4.211 6 C 0.267 3.733 7 N -0.861 5.861 8 C -0.188 4.188 9 C 0.514 3.486 10 O -0.515 6.515 11 O -0.325 6.325 12 C 0.088 3.912 13 H 0.073 0.927 14 C -0.167 4.167 15 C 0.024 3.976 16 C -0.515 4.515 17 H 0.051 0.949 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.402 0.598 31 H 0.405 0.595 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.030 0.970 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.848 14.067 7.562 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.002 3.998 3 C -0.209 4.209 4 C -0.069 4.069 5 C -0.233 4.233 6 C 0.158 3.842 7 N -0.397 5.397 8 C -0.194 4.194 9 C 0.357 3.643 10 O -0.404 6.404 11 O -0.240 6.240 12 C 0.034 3.966 13 H 0.091 0.909 14 C -0.224 4.224 15 C -0.012 4.012 16 C -0.553 4.553 17 H 0.069 0.931 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.231 0.769 31 H 0.235 0.765 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.725 13.750 7.669 15.761 hybrid contribution 1.234 -0.793 -0.042 1.467 sum 1.959 12.957 7.628 15.163 Atomic orbital electron populations 1.20925 0.90993 1.03090 1.03117 1.19569 0.95657 0.91020 0.93556 1.20600 0.94070 0.96778 1.09438 1.20930 0.93969 0.97249 0.94780 1.20466 0.99548 0.90636 1.12693 1.17570 0.89215 0.87262 0.90178 1.42482 1.09342 1.05743 1.82182 1.18483 0.91504 0.91455 1.17977 1.21034 0.76144 0.84283 0.82833 1.90800 1.52277 1.63978 1.33388 1.86823 1.67546 1.37634 1.32046 1.23227 0.88970 0.81251 1.03130 0.90864 1.22229 0.96442 1.02245 1.01488 1.19306 0.97407 0.93468 0.91066 1.20998 0.94563 1.31758 1.07974 0.93109 1.24962 0.97866 0.95980 0.95391 1.69930 1.35724 1.36279 1.11366 0.86671 0.85454 0.78484 0.77504 1.20253 1.21168 1.20233 0.90134 0.91497 0.90829 0.85857 0.85854 0.85691 0.76943 0.76498 0.93432 0.92020 0.91075 0.94167 0.95169 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 9.62 36.01 0.35 -1.25 16 2 C 0.00 0.04 5.91 -104.23 -0.62 -0.57 16 3 C -0.19 -2.30 9.67 -39.62 -0.38 -2.68 16 4 C -0.05 -0.58 10.03 -39.54 -0.40 -0.97 16 5 C -0.21 -2.69 9.88 -39.42 -0.39 -3.07 16 6 C 0.27 4.20 6.77 -83.60 -0.57 3.63 16 7 N -0.86 -12.99 8.99 32.55 0.29 -12.70 16 8 C -0.19 -3.27 5.77 -104.82 -0.60 -3.88 16 9 C 0.51 10.32 4.58 34.41 0.16 10.48 16 10 O -0.51 -11.17 16.36 -19.28 -0.32 -11.49 16 11 O -0.33 -7.13 9.65 -40.67 -0.39 -7.52 16 12 C 0.09 1.94 2.51 -26.73 -0.07 1.87 16 13 H 0.07 1.67 7.16 -51.93 -0.37 1.30 16 14 C -0.17 -3.01 9.55 37.16 0.35 -2.66 16 15 C 0.02 0.62 4.69 -27.88 -0.13 0.49 16 16 C -0.51 -14.35 8.89 -34.44 -0.31 -14.66 16 17 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 20 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.07 0.97 7.09 -51.93 -0.37 0.60 16 26 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 27 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 28 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.40 4.74 8.83 -40.82 -0.36 4.38 16 31 H 0.41 6.99 7.68 -40.82 -0.31 6.67 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 320.39 15.07 4.83 4.83 Total: -1.00 -31.94 320.39 -7.75 -39.69 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -5.18 Total: 8.16 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -2.70 Total: -11.70 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 1.03 Total: -38.33 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.71 Total: -19.01 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.94 -7.75 -39.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813252.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.019 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds