Wall clock time and date at job start Mon Mar 30 2020 07:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37766 * 120.03459 * 2 1 4 4 C 1.38593 * 120.35715 * 179.74419 * 3 2 1 5 5 C 1.37982 * 120.43620 * 0.23344 * 4 3 2 6 6 C 1.38916 * 120.07060 * 0.02562 * 5 4 3 7 7 N 1.38843 * 120.18069 * 180.02562 * 6 5 4 8 8 C 1.39752 * 120.04240 * 180.23184 * 2 1 3 9 9 C 1.47295 * 120.21596 * 359.97438 * 8 2 1 10 10 O 1.21521 * 119.99858 * 270.29723 * 9 8 2 11 11 O 1.34767 * 119.99836 * 90.29235 * 9 8 2 12 12 C 1.45202 * 116.99511 * 179.97438 * 11 9 8 13 13 H 1.08991 * 109.47556 * 330.00485 * 12 11 9 14 14 C 1.53005 * 109.46713 * 90.00609 * 12 11 9 15 15 C 1.53003 * 109.46687 * 210.00034 * 12 11 9 16 16 C 1.50703 * 109.47131 * 65.00741 * 15 12 11 17 17 H 1.07996 * 119.99513 * 359.97438 * 16 15 12 18 18 C 1.37870 * 119.99868 * 179.97438 * 16 15 12 19 19 N 1.31512 * 120.00295 * 0.02562 * 18 16 15 20 20 Si 1.86810 * 119.99864 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46793 * 60.00229 * 20 18 16 22 22 H 1.48502 * 109.46900 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46894 * 300.00291 * 20 18 16 24 24 H 1.08999 * 109.47265 * 90.00259 * 1 2 3 25 25 H 1.09004 * 109.46578 * 209.99653 * 1 2 3 26 26 H 1.08995 * 109.47540 * 329.99485 * 1 2 3 27 27 H 1.08002 * 119.82440 * 0.02695 * 3 2 1 28 28 H 1.08001 * 119.77828 * 180.25892 * 4 3 2 29 29 H 1.08003 * 119.96377 * 180.02562 * 5 4 3 30 30 H 0.97000 * 119.99887 * 0.02562 * 7 6 5 31 31 H 0.97001 * 120.00190 * 179.97438 * 7 6 5 32 32 H 1.08995 * 109.46902 * 299.99241 * 14 12 11 33 33 H 1.09000 * 109.47049 * 59.99924 * 14 12 11 34 34 H 1.09001 * 109.46790 * 179.97438 * 14 12 11 35 35 H 1.09004 * 109.46712 * 185.00433 * 15 12 11 36 36 H 1.08990 * 109.47456 * 305.00061 * 15 12 11 37 37 H 0.97006 * 119.99932 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1927 0.0000 4 6 3.5824 1.2005 0.0053 5 6 4.2881 0.0148 0.0059 6 6 3.6111 -1.1982 0.0005 7 7 4.3188 -2.3927 0.0016 8 6 2.2066 -1.2098 -0.0049 9 6 1.4759 -2.4887 -0.0095 10 8 1.1702 -3.0175 1.0410 11 8 1.1464 -3.0722 -1.1787 12 6 0.4272 -4.3316 -1.1072 13 1 0.7131 -4.8622 -0.1991 14 6 -1.0781 -4.0587 -1.0860 15 6 0.7735 -5.1865 -2.3279 16 6 2.2333 -5.5581 -2.2833 17 1 2.8522 -5.2180 -1.4663 18 6 2.7786 -6.3320 -3.2856 19 7 2.0249 -6.7457 -4.2808 20 14 4.5883 -6.7920 -3.2306 21 1 4.8659 -7.5619 -1.9916 22 1 4.9243 -7.6218 -4.4154 23 1 5.4133 -5.5573 -3.2416 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3632 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6542 2.1267 0.0004 28 1 4.1135 2.1409 0.0095 29 1 5.3680 0.0298 0.0105 30 1 5.2888 -2.3817 0.0064 31 1 3.8434 -3.2382 -0.0018 32 1 -1.3247 -3.4496 -0.2164 33 1 -1.3640 -3.5281 -1.9942 34 1 -1.6180 -5.0041 -1.0328 35 1 0.1675 -6.0926 -2.3205 36 1 0.5701 -4.6210 -3.2371 37 1 2.4087 -7.2899 -4.9861 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813252.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:57 Heat of formation + Delta-G solvation = -100.856644 kcal Electronic energy + Delta-G solvation = -20024.021718 eV Core-core repulsion = 16957.567523 eV Total energy + Delta-G solvation = -3066.454195 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.76055 -39.99429 -37.74666 -36.01760 -35.42537 -33.65639 -33.10565 -30.26981 -29.41863 -27.93075 -25.74473 -24.91075 -22.50764 -22.29487 -21.35778 -19.12392 -18.56473 -18.14116 -17.88763 -17.47176 -16.58562 -16.50484 -15.63821 -15.32237 -14.97166 -14.86550 -14.52726 -14.28695 -14.12292 -13.83386 -13.56797 -13.38740 -13.25322 -13.16558 -12.70532 -12.67689 -12.60926 -12.31195 -12.21254 -11.77285 -11.54274 -11.49045 -11.40386 -11.00783 -10.61035 -9.76222 -8.58124 -8.23657 -6.33476 0.19868 0.62654 1.06591 1.35809 1.38533 1.46098 1.88409 2.36983 2.78917 2.82696 3.10331 3.72614 3.81465 4.00098 4.04937 4.17070 4.35732 4.40087 4.45468 4.55730 4.67468 4.70842 4.78096 4.90334 4.92081 5.07113 5.15003 5.20436 5.31900 5.32918 5.51410 5.61683 5.67201 5.73151 5.92854 6.13921 6.33437 6.71296 6.74022 6.78079 7.33539 8.87870 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019201 B = 0.006635 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.891579 B = 4218.967541 C = 5217.056578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.013 4.013 3 C -0.183 4.183 4 C -0.040 4.040 5 C -0.210 4.210 6 C 0.244 3.756 7 N -0.866 5.866 8 C -0.230 4.230 9 C 0.521 3.479 10 O -0.540 6.540 11 O -0.341 6.341 12 C 0.092 3.908 13 H 0.059 0.941 14 C -0.157 4.157 15 C 0.030 3.970 16 C -0.534 4.534 17 H 0.049 0.951 18 C 0.007 3.993 19 N -0.928 5.928 20 Si 0.959 3.041 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.267 1.267 24 H 0.083 0.917 25 H 0.041 0.959 26 H 0.105 0.895 27 H 0.158 0.842 28 H 0.166 0.834 29 H 0.152 0.848 30 H 0.414 0.586 31 H 0.391 0.609 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.027 0.973 36 H 0.006 0.994 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 16.531 8.040 18.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.014 4.014 3 C -0.202 4.202 4 C -0.058 4.058 5 C -0.233 4.233 6 C 0.136 3.864 7 N -0.402 5.402 8 C -0.237 4.237 9 C 0.366 3.634 10 O -0.431 6.431 11 O -0.257 6.257 12 C 0.038 3.962 13 H 0.077 0.923 14 C -0.214 4.214 15 C -0.006 4.006 16 C -0.572 4.572 17 H 0.068 0.932 18 C -0.192 4.192 19 N -0.568 5.568 20 Si 0.783 3.217 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.192 1.192 24 H 0.101 0.899 25 H 0.060 0.940 26 H 0.123 0.877 27 H 0.175 0.825 28 H 0.184 0.816 29 H 0.170 0.830 30 H 0.245 0.755 31 H 0.218 0.782 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.045 0.955 36 H 0.025 0.975 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.088 16.242 8.158 18.295 hybrid contribution 0.813 -1.467 -0.180 1.687 sum 2.901 14.775 7.978 17.040 Atomic orbital electron populations 1.20960 0.90233 1.03417 1.03373 1.19903 0.96554 0.91058 0.93856 1.21042 0.94772 0.96915 1.07506 1.21476 0.93884 0.98389 0.92070 1.20870 1.01013 0.89839 1.11538 1.17932 0.88894 0.88422 0.91144 1.42494 1.10017 1.05125 1.82610 1.18667 0.92442 0.90768 1.21802 1.21576 0.75324 0.84802 0.81713 1.90759 1.53451 1.64990 1.33943 1.86804 1.67984 1.37331 1.33593 1.22972 0.91405 0.81389 1.00416 0.92291 1.22149 0.93551 1.03375 1.02368 1.19132 0.96483 0.93308 0.91717 1.21337 0.95717 1.31987 1.08137 0.93245 1.25839 1.02677 0.95761 0.94875 1.70051 1.37783 1.36880 1.12042 0.85597 0.79702 0.78522 0.77866 1.19307 1.20551 1.19222 0.89883 0.93951 0.87651 0.82471 0.81644 0.83024 0.75452 0.78202 0.92256 0.91316 0.89622 0.95486 0.97541 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.03 9.62 71.24 0.68 -2.35 16 2 C -0.01 -0.36 5.91 -19.61 -0.12 -0.48 16 3 C -0.18 -3.78 9.67 22.24 0.22 -3.56 16 4 C -0.04 -0.73 10.03 22.29 0.22 -0.51 16 5 C -0.21 -4.75 9.88 22.37 0.22 -4.53 16 6 C 0.24 7.53 6.77 38.73 0.26 7.80 16 7 N -0.87 -26.25 8.99 -50.92 -0.46 -26.70 16 8 C -0.23 -8.05 5.77 -19.99 -0.12 -8.17 16 9 C 0.52 21.62 4.58 70.20 0.32 21.95 16 10 O -0.54 -24.40 16.36 19.77 0.32 -24.08 16 11 O -0.34 -15.54 9.65 -56.78 -0.55 -16.09 16 12 C 0.09 4.22 2.51 30.60 0.08 4.29 16 13 H 0.06 2.82 7.16 -2.39 -0.02 2.81 16 14 C -0.16 -5.76 9.55 71.98 0.69 -5.07 16 15 C 0.03 1.63 4.69 29.85 0.14 1.77 16 16 C -0.53 -30.64 8.89 25.60 0.23 -30.42 16 17 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 18 C 0.01 0.39 5.46 84.65 0.46 0.85 16 19 N -0.93 -55.79 13.29 21.44 0.28 -55.50 16 20 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.04 1.23 7.09 -2.39 -0.02 1.21 16 26 H 0.10 1.83 8.08 -2.39 -0.02 1.81 16 27 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 28 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 29 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.41 9.56 8.83 -92.71 -0.82 8.74 16 31 H 0.39 14.01 7.68 -92.71 -0.71 13.30 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 Total: -1.00 -71.15 320.39 4.48 -66.67 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: -0.44 Total: 27.95 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 3.29 Total: -18.43 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -0.17 Total: -82.21 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -0.22 Total: -40.16 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -71.15 4.48 -66.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813252.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.186 kcal (2) G-P(sol) polarization free energy of solvation -71.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds