Wall clock time and date at job start Mon Mar 30 2020 07:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37766 * 120.03459 * 2 1 4 4 C 1.38593 * 120.35715 * 179.74419 * 3 2 1 5 5 C 1.37982 * 120.43620 * 0.23344 * 4 3 2 6 6 C 1.38916 * 120.07060 * 0.02562 * 5 4 3 7 7 N 1.38843 * 120.18069 * 180.02562 * 6 5 4 8 8 C 1.39752 * 120.04240 * 180.23184 * 2 1 3 9 9 C 1.47295 * 120.21596 * 359.97438 * 8 2 1 10 10 O 1.21521 * 119.99858 * 270.29723 * 9 8 2 11 11 O 1.34767 * 119.99836 * 90.29235 * 9 8 2 12 12 C 1.45202 * 116.99511 * 179.97438 * 11 9 8 13 13 H 1.08993 * 109.47038 * 30.00915 * 12 11 9 14 14 C 1.52996 * 109.47157 * 269.99940 * 12 11 9 15 15 C 1.52999 * 109.46680 * 150.00380 * 12 11 9 16 16 C 1.50700 * 109.47199 * 295.00085 * 15 12 11 17 17 H 1.08002 * 119.99890 * 0.02562 * 16 15 12 18 18 C 1.37882 * 120.00274 * 180.02562 * 16 15 12 19 19 N 1.31513 * 119.99861 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00180 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46757 * 89.99755 * 20 18 16 22 22 H 1.48494 * 109.46896 * 209.99940 * 20 18 16 23 23 H 1.48503 * 109.46981 * 330.00365 * 20 18 16 24 24 H 1.08999 * 109.47265 * 90.00259 * 1 2 3 25 25 H 1.09004 * 109.46578 * 209.99653 * 1 2 3 26 26 H 1.08995 * 109.47540 * 329.99485 * 1 2 3 27 27 H 1.08002 * 119.82440 * 0.02695 * 3 2 1 28 28 H 1.08001 * 119.77828 * 180.25892 * 4 3 2 29 29 H 1.08003 * 119.96377 * 180.02562 * 5 4 3 30 30 H 0.97000 * 119.99887 * 0.02562 * 7 6 5 31 31 H 0.97001 * 120.00190 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.47080 * 180.02562 * 14 12 11 33 33 H 1.09001 * 109.47780 * 300.00162 * 14 12 11 34 34 H 1.08999 * 109.46871 * 60.00851 * 14 12 11 35 35 H 1.08999 * 109.47240 * 54.99826 * 15 12 11 36 36 H 1.09000 * 109.47235 * 175.00031 * 15 12 11 37 37 H 0.96995 * 120.00133 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1927 0.0000 4 6 3.5824 1.2005 0.0053 5 6 4.2881 0.0148 0.0059 6 6 3.6111 -1.1982 0.0005 7 7 4.3188 -2.3927 0.0016 8 6 2.2066 -1.2098 -0.0049 9 6 1.4759 -2.4887 -0.0095 10 8 1.1702 -3.0175 1.0410 11 8 1.1464 -3.0722 -1.1787 12 6 0.4272 -4.3316 -1.1072 13 1 -0.1793 -4.3527 -0.2019 14 6 1.4274 -5.4890 -1.0783 15 6 -0.4793 -4.4714 -2.3318 16 6 -1.5415 -3.4030 -2.2951 17 1 -1.5671 -2.6949 -1.4800 18 6 -2.4806 -3.3296 -3.3020 19 7 -2.4496 -4.1922 -4.2942 20 14 -3.7977 -2.0057 -3.2561 21 1 -3.3078 -0.7955 -3.9636 22 1 -5.0260 -2.5063 -3.9237 23 1 -4.1060 -1.6630 -1.8444 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3632 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6542 2.1267 0.0004 28 1 4.1135 2.1409 0.0095 29 1 5.3680 0.0298 0.0105 30 1 5.2888 -2.3817 0.0064 31 1 3.8434 -3.2382 -0.0018 32 1 0.8875 -6.4345 -1.0250 33 1 2.0339 -5.4680 -1.9837 34 1 2.0731 -5.3895 -0.2058 35 1 0.1155 -4.3614 -3.2386 36 1 -0.9515 -5.4537 -2.3240 37 1 -3.1100 -4.1404 -5.0027 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695813256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:59 Heat of formation + Delta-G solvation = -80.905167 kcal Electronic energy + Delta-G solvation = -20027.668935 eV Core-core repulsion = 16962.079901 eV Total energy + Delta-G solvation = -3065.589034 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.34060 -38.74584 -36.07306 -35.00826 -33.38629 -32.33786 -31.46166 -29.14979 -27.47423 -26.87351 -24.23843 -23.13558 -21.34905 -20.89146 -19.73714 -17.64248 -17.14676 -16.61157 -16.39668 -16.07920 -15.12949 -14.67181 -14.35743 -14.15149 -13.72341 -13.37062 -13.10312 -12.99685 -12.45443 -12.31246 -12.13261 -11.92065 -11.68173 -11.46785 -11.42354 -11.16121 -10.84209 -10.74512 -10.52849 -10.35466 -10.04589 -9.86367 -9.36073 -9.06280 -8.66624 -8.39503 -7.57840 -6.02727 -4.04135 1.26484 1.62714 2.59720 3.31664 3.35697 3.37885 3.41385 3.75822 3.84864 4.44863 4.82933 4.95521 5.18114 5.34752 5.39424 5.42462 5.53135 5.66991 5.77242 5.86166 5.88399 5.94665 5.97833 6.14000 6.27709 6.37208 6.48464 6.53351 6.66700 6.70521 6.85255 7.09441 7.36301 7.49627 7.61550 7.66483 7.93309 8.30063 8.39212 8.98643 9.58972 11.08758 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019305 B = 0.006608 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.041861 B = 4236.060883 C = 5220.651211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.011 3.989 3 C -0.184 4.184 4 C -0.051 4.051 5 C -0.211 4.211 6 C 0.258 3.742 7 N -0.867 5.867 8 C -0.185 4.185 9 C 0.514 3.486 10 O -0.514 6.514 11 O -0.325 6.325 12 C 0.088 3.912 13 H 0.074 0.926 14 C -0.167 4.167 15 C 0.024 3.976 16 C -0.514 4.514 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.896 5.896 20 Si 0.890 3.110 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.401 0.599 31 H 0.399 0.601 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.029 0.971 36 H 0.040 0.960 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.990 7.221 7.622 16.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.010 3.990 3 C -0.204 4.204 4 C -0.070 4.070 5 C -0.234 4.234 6 C 0.151 3.849 7 N -0.405 5.405 8 C -0.191 4.191 9 C 0.357 3.643 10 O -0.404 6.404 11 O -0.240 6.240 12 C 0.034 3.966 13 H 0.092 0.908 14 C -0.224 4.224 15 C -0.012 4.012 16 C -0.552 4.552 17 H 0.073 0.927 18 C -0.142 4.142 19 N -0.535 5.535 20 Si 0.718 3.282 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.198 1.198 24 H 0.106 0.894 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.230 0.770 31 H 0.228 0.772 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.764 6.978 7.739 16.478 hybrid contribution -0.576 0.224 -0.049 0.621 sum 12.187 7.203 7.691 16.111 Atomic orbital electron populations 1.20988 0.90448 1.03189 1.03977 1.19685 0.96047 0.90948 0.92352 1.20673 0.94055 0.96989 1.08727 1.20945 0.93968 0.97287 0.94818 1.20421 0.99390 0.90638 1.12921 1.17516 0.89110 0.87161 0.91078 1.42345 1.09090 1.05469 1.83580 1.18512 0.91381 0.91615 1.17585 1.21023 0.76170 0.84248 0.82847 1.90801 1.51769 1.64455 1.33387 1.86820 1.67167 1.38014 1.32027 1.23229 0.91970 0.78085 1.03319 0.90756 1.22244 0.99907 0.99057 1.01235 1.19306 0.92977 0.98061 0.90905 1.21093 1.11860 1.14276 1.07980 0.92731 1.24965 0.97809 0.96052 0.95407 1.69943 1.36060 1.36112 1.11403 0.86616 0.81280 0.82076 0.78273 1.20509 1.21179 1.19772 0.89352 0.91178 0.90898 0.85693 0.85813 0.85769 0.77018 0.77199 0.90960 0.92045 0.93639 0.95232 0.94200 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.62 36.01 0.35 -1.73 16 2 C 0.01 0.17 5.91 -104.23 -0.62 -0.45 16 3 C -0.18 -2.39 9.67 -39.62 -0.38 -2.77 16 4 C -0.05 -0.58 10.03 -39.54 -0.40 -0.98 16 5 C -0.21 -2.50 9.88 -39.42 -0.39 -2.89 16 6 C 0.26 3.72 6.77 -83.60 -0.57 3.15 16 7 N -0.87 -10.38 8.99 32.55 0.29 -10.09 16 8 C -0.18 -3.21 5.77 -104.82 -0.60 -3.82 16 9 C 0.51 10.31 4.58 34.41 0.16 10.47 16 10 O -0.51 -11.17 16.36 -19.28 -0.32 -11.48 16 11 O -0.33 -7.11 9.65 -40.67 -0.39 -7.50 16 12 C 0.09 1.93 2.51 -26.73 -0.07 1.86 16 13 H 0.07 1.71 7.16 -51.93 -0.37 1.34 16 14 C -0.17 -2.95 9.55 37.16 0.35 -2.59 16 15 C 0.02 0.63 4.69 -27.88 -0.13 0.49 16 16 C -0.51 -14.54 8.89 -34.44 -0.31 -14.85 16 17 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 20 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 24 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 25 H 0.07 1.27 7.09 -51.93 -0.37 0.90 16 26 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 27 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 29 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 30 H 0.40 3.39 8.83 -40.82 -0.36 3.03 16 31 H 0.40 5.18 7.68 -40.82 -0.31 4.87 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 320.38 15.07 4.83 4.83 Total: -1.00 -32.41 320.38 -7.75 -40.16 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.18 Total: 5.82 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -2.70 Total: -12.52 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 1.03 Total: -35.97 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.71 Total: -18.98 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.41 -7.75 -40.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.745 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds