Wall clock time and date at job start Mon Mar 30 2020 07:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37766 * 120.03459 * 2 1 4 4 C 1.38593 * 120.35715 * 179.74419 * 3 2 1 5 5 C 1.37982 * 120.43620 * 0.23344 * 4 3 2 6 6 C 1.38916 * 120.07060 * 0.02562 * 5 4 3 7 7 N 1.38843 * 120.18069 * 180.02562 * 6 5 4 8 8 C 1.39752 * 120.04240 * 180.23184 * 2 1 3 9 9 C 1.47295 * 120.21596 * 359.97438 * 8 2 1 10 10 O 1.21521 * 119.99858 * 270.29723 * 9 8 2 11 11 O 1.34767 * 119.99836 * 90.29235 * 9 8 2 12 12 C 1.45202 * 116.99511 * 179.97438 * 11 9 8 13 13 H 1.08993 * 109.47038 * 30.00915 * 12 11 9 14 14 C 1.52996 * 109.47157 * 269.99940 * 12 11 9 15 15 C 1.52999 * 109.46680 * 150.00380 * 12 11 9 16 16 C 1.50700 * 109.47199 * 295.00085 * 15 12 11 17 17 H 1.08002 * 119.99890 * 0.02562 * 16 15 12 18 18 C 1.37882 * 120.00274 * 180.02562 * 16 15 12 19 19 N 1.31513 * 119.99861 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00180 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46757 * 89.99755 * 20 18 16 22 22 H 1.48494 * 109.46896 * 209.99940 * 20 18 16 23 23 H 1.48503 * 109.46981 * 330.00365 * 20 18 16 24 24 H 1.08999 * 109.47265 * 90.00259 * 1 2 3 25 25 H 1.09004 * 109.46578 * 209.99653 * 1 2 3 26 26 H 1.08995 * 109.47540 * 329.99485 * 1 2 3 27 27 H 1.08002 * 119.82440 * 0.02695 * 3 2 1 28 28 H 1.08001 * 119.77828 * 180.25892 * 4 3 2 29 29 H 1.08003 * 119.96377 * 180.02562 * 5 4 3 30 30 H 0.97000 * 119.99887 * 0.02562 * 7 6 5 31 31 H 0.97001 * 120.00190 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.47080 * 180.02562 * 14 12 11 33 33 H 1.09001 * 109.47780 * 300.00162 * 14 12 11 34 34 H 1.08999 * 109.46871 * 60.00851 * 14 12 11 35 35 H 1.08999 * 109.47240 * 54.99826 * 15 12 11 36 36 H 1.09000 * 109.47235 * 175.00031 * 15 12 11 37 37 H 0.96995 * 120.00133 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1927 0.0000 4 6 3.5824 1.2005 0.0053 5 6 4.2881 0.0148 0.0059 6 6 3.6111 -1.1982 0.0005 7 7 4.3188 -2.3927 0.0016 8 6 2.2066 -1.2098 -0.0049 9 6 1.4759 -2.4887 -0.0095 10 8 1.1702 -3.0175 1.0410 11 8 1.1464 -3.0722 -1.1787 12 6 0.4272 -4.3316 -1.1072 13 1 -0.1793 -4.3527 -0.2019 14 6 1.4274 -5.4890 -1.0783 15 6 -0.4793 -4.4714 -2.3318 16 6 -1.5415 -3.4030 -2.2951 17 1 -1.5671 -2.6949 -1.4800 18 6 -2.4806 -3.3296 -3.3020 19 7 -2.4496 -4.1922 -4.2942 20 14 -3.7977 -2.0057 -3.2561 21 1 -3.3078 -0.7955 -3.9636 22 1 -5.0260 -2.5063 -3.9237 23 1 -4.1060 -1.6630 -1.8444 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3632 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6542 2.1267 0.0004 28 1 4.1135 2.1409 0.0095 29 1 5.3680 0.0298 0.0105 30 1 5.2888 -2.3817 0.0064 31 1 3.8434 -3.2382 -0.0018 32 1 0.8875 -6.4345 -1.0250 33 1 2.0339 -5.4680 -1.9837 34 1 2.0731 -5.3895 -0.2058 35 1 0.1155 -4.3614 -3.2386 36 1 -0.9515 -5.4537 -2.3240 37 1 -3.1100 -4.1404 -5.0027 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:59 Heat of formation + Delta-G solvation = -100.681581 kcal Electronic energy + Delta-G solvation = -20028.526505 eV Core-core repulsion = 16962.079901 eV Total energy + Delta-G solvation = -3066.446604 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.76916 -40.00203 -37.75242 -36.02473 -35.42385 -33.67450 -33.10180 -30.28343 -29.41503 -27.97621 -25.74161 -24.91923 -22.51949 -22.29867 -21.37464 -19.07726 -18.57484 -18.29261 -17.79744 -17.41440 -16.66054 -16.47395 -15.63665 -15.34982 -14.96578 -14.84846 -14.60660 -14.27162 -14.10017 -13.84371 -13.60280 -13.39136 -13.26519 -13.21551 -12.70889 -12.66309 -12.62983 -12.30794 -12.20811 -11.76757 -11.54685 -11.49449 -11.40161 -11.00521 -10.60782 -9.77183 -8.57417 -8.23699 -6.33083 0.18838 0.60894 1.05577 1.36728 1.37776 1.48731 1.88110 2.38190 2.79509 2.81890 3.10204 3.71896 3.78571 3.99449 4.03494 4.16078 4.35517 4.38773 4.43125 4.55204 4.63778 4.68799 4.75950 4.88331 4.91696 5.06704 5.12782 5.19314 5.30977 5.32647 5.51410 5.61925 5.68165 5.73070 5.90742 6.15090 6.33954 6.73422 6.76882 6.79772 7.34222 8.88003 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019305 B = 0.006608 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.041861 B = 4236.060883 C = 5220.651211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.016 4.016 3 C -0.184 4.184 4 C -0.040 4.040 5 C -0.204 4.204 6 C 0.250 3.750 7 N -0.861 5.861 8 C -0.229 4.229 9 C 0.520 3.480 10 O -0.540 6.540 11 O -0.341 6.341 12 C 0.092 3.908 13 H 0.056 0.944 14 C -0.157 4.157 15 C 0.030 3.970 16 C -0.534 4.534 17 H 0.046 0.954 18 C 0.008 3.992 19 N -0.927 5.927 20 Si 0.955 3.045 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.268 1.268 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.103 0.897 27 H 0.151 0.849 28 H 0.167 0.833 29 H 0.161 0.839 30 H 0.418 0.582 31 H 0.393 0.607 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.007 0.993 36 H 0.028 0.972 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.701 9.531 8.062 19.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.016 4.016 3 C -0.204 4.204 4 C -0.058 4.058 5 C -0.227 4.227 6 C 0.142 3.858 7 N -0.399 5.399 8 C -0.235 4.235 9 C 0.365 3.635 10 O -0.431 6.431 11 O -0.257 6.257 12 C 0.037 3.963 13 H 0.074 0.926 14 C -0.214 4.214 15 C -0.007 4.007 16 C -0.572 4.572 17 H 0.064 0.936 18 C -0.190 4.190 19 N -0.567 5.567 20 Si 0.779 3.221 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.192 1.192 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.122 0.878 27 H 0.168 0.832 28 H 0.185 0.815 29 H 0.178 0.822 30 H 0.250 0.750 31 H 0.220 0.780 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.026 0.974 36 H 0.046 0.954 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.510 9.285 8.185 19.072 hybrid contribution -1.033 -0.454 -0.176 1.142 sum 13.477 8.831 8.009 17.994 Atomic orbital electron populations 1.20934 0.91523 1.03026 1.02780 1.19826 0.95712 0.91867 0.94222 1.21008 0.95180 0.96561 1.07604 1.21477 0.93351 0.98902 0.92065 1.20902 1.01198 0.89585 1.10984 1.17779 0.88163 0.88869 0.91027 1.42348 1.09982 1.04632 1.82906 1.18637 0.92861 0.90352 1.21661 1.21585 0.75414 0.84750 0.81721 1.90759 1.52995 1.65437 1.33947 1.86800 1.67230 1.38090 1.33592 1.22972 0.92853 0.80101 1.00335 0.92562 1.22156 0.99205 0.97569 1.02469 1.19134 0.92962 0.96814 0.91757 1.21378 1.12983 1.14855 1.08014 0.93595 1.25812 1.00004 0.98303 0.94879 1.70047 1.37028 1.37644 1.12005 0.85591 0.78500 0.79360 0.78607 1.19474 1.20168 1.19198 0.91114 0.94508 0.87817 0.83168 0.81532 0.82182 0.75009 0.77969 0.89626 0.91181 0.91911 0.97426 0.95439 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 9.62 71.24 0.68 -3.48 16 2 C -0.02 -0.49 5.91 -19.61 -0.12 -0.61 16 3 C -0.18 -4.24 9.67 22.24 0.22 -4.02 16 4 C -0.04 -0.72 10.03 22.29 0.22 -0.50 16 5 C -0.20 -4.06 9.88 22.37 0.22 -3.84 16 6 C 0.25 6.79 6.77 38.73 0.26 7.06 16 7 N -0.86 -19.39 8.99 -50.92 -0.46 -19.84 16 8 C -0.23 -8.00 5.77 -19.99 -0.12 -8.12 16 9 C 0.52 21.68 4.58 70.20 0.32 22.00 16 10 O -0.54 -24.49 16.36 19.77 0.32 -24.17 16 11 O -0.34 -15.59 9.65 -56.78 -0.55 -16.14 16 12 C 0.09 4.20 2.51 30.59 0.08 4.27 16 13 H 0.06 2.74 7.16 -2.39 -0.02 2.72 16 14 C -0.16 -5.57 9.55 71.98 0.69 -4.88 16 15 C 0.03 1.63 4.69 29.85 0.14 1.77 16 16 C -0.53 -31.41 8.89 25.60 0.23 -31.19 16 17 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 18 C 0.01 0.49 5.46 84.66 0.46 0.95 16 19 N -0.93 -56.21 13.29 21.45 0.28 -55.92 16 20 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 24 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 25 H 0.04 1.41 7.09 -2.39 -0.02 1.40 16 26 H 0.10 2.62 8.08 -2.39 -0.02 2.60 16 27 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 28 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 29 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 30 H 0.42 6.10 8.83 -92.71 -0.82 5.28 16 31 H 0.39 10.03 7.68 -92.71 -0.71 9.32 16 32 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.03 1.52 8.14 -2.39 -0.02 1.51 16 37 H 0.27 15.09 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -73.03 320.38 4.48 -68.55 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -0.44 Total: 21.00 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 3.29 Total: -20.57 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -0.17 Total: -75.77 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -0.22 Total: -40.31 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -73.03 4.48 -68.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.127 kcal (2) G-P(sol) polarization free energy of solvation -73.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds