Wall clock time and date at job start Mon Mar 30 2020 07:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38663 * 120.11531 * 2 1 4 4 N 1.39713 * 120.00099 * 0.02562 * 3 2 1 5 5 C 1.38990 * 120.00082 * 180.02562 * 3 2 1 6 6 C 1.38260 * 120.22563 * 359.97438 * 5 3 2 7 7 C 1.37970 * 120.23180 * 359.76629 * 6 5 3 8 8 C 1.39508 * 120.11808 * 180.02562 * 2 1 3 9 9 C 1.47749 * 120.11191 * 359.97438 * 8 2 1 10 10 O 1.21469 * 119.99743 * 354.09392 * 9 8 2 11 11 O 1.34712 * 120.00009 * 174.10136 * 9 8 2 12 12 C 1.45191 * 117.00055 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47563 * 29.99282 * 12 11 9 14 14 C 1.53001 * 109.46933 * 269.99627 * 12 11 9 15 15 C 1.52997 * 109.47219 * 149.99929 * 12 11 9 16 16 C 1.50703 * 109.46886 * 294.99820 * 15 12 11 17 17 H 1.08001 * 120.00180 * 359.97438 * 16 15 12 18 18 C 1.37881 * 119.99881 * 180.02562 * 16 15 12 19 19 N 1.31509 * 119.99954 * 359.72577 * 18 16 15 20 20 Si 1.86803 * 119.99974 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47227 * 179.72588 * 20 18 16 22 22 H 1.48505 * 109.46866 * 299.72536 * 20 18 16 23 23 H 1.48497 * 109.46852 * 59.72408 * 20 18 16 24 24 H 1.09003 * 109.46644 * 263.47410 * 1 2 3 25 25 H 1.08993 * 109.47325 * 23.47340 * 1 2 3 26 26 H 1.08992 * 109.47028 * 143.47759 * 1 2 3 27 27 H 0.96999 * 119.99828 * 0.02562 * 4 3 2 28 28 H 0.97001 * 119.99907 * 179.97438 * 4 3 2 29 29 H 1.07998 * 119.89018 * 180.02562 * 5 3 2 30 30 H 1.07998 * 119.88033 * 180.02562 * 6 5 3 31 31 H 1.08007 * 119.99755 * 180.27327 * 7 6 5 32 32 H 1.09004 * 109.47404 * 60.00118 * 14 12 11 33 33 H 1.09000 * 109.47394 * 179.97438 * 14 12 11 34 34 H 1.08998 * 109.47331 * 299.99800 * 14 12 11 35 35 H 1.09003 * 109.47374 * 174.99866 * 15 12 11 36 36 H 1.08998 * 109.47363 * 54.99564 * 15 12 11 37 37 H 0.97002 * 120.00205 * 0.27673 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2028 1.1995 0.0000 4 7 1.5067 2.4108 0.0005 5 6 3.5927 1.1967 -0.0005 6 6 4.2863 0.0007 -0.0005 7 6 3.6036 -1.1983 0.0049 8 6 2.2071 -1.2067 -0.0005 9 6 1.4735 -2.4892 -0.0005 10 8 0.2637 -2.4969 0.1082 11 8 2.1463 -3.6501 -0.1210 12 6 1.3609 -4.8711 -0.1125 13 1 0.3738 -4.6712 -0.5295 14 6 1.2149 -5.3737 1.3252 15 6 2.0647 -5.9361 -0.9560 16 6 2.0991 -5.4942 -2.3963 17 1 1.6623 -4.5485 -2.6817 18 6 2.6874 -6.2976 -3.3500 19 7 3.2231 -7.4471 -3.0019 20 14 2.7295 -5.7502 -5.1356 21 1 3.4180 -6.7809 -5.9532 22 1 1.3411 -5.5712 -5.6313 23 1 3.4627 -4.4632 -5.2415 24 1 -0.3633 -0.1168 1.0211 25 1 -0.3633 0.9425 -0.4093 26 1 -0.3633 -0.8258 -0.6116 27 1 0.5367 2.4128 0.0013 28 1 1.9934 3.2499 0.0009 29 1 4.1328 2.1319 -0.0001 30 1 5.3663 0.0050 -0.0005 31 1 4.1493 -2.1304 0.0093 32 1 0.7134 -4.6150 1.9262 33 1 0.6248 -6.2901 1.3316 34 1 2.2019 -5.5737 1.7422 35 1 1.5223 -6.8784 -0.8779 36 1 3.0835 -6.0721 -0.5932 37 1 3.2009 -7.7315 -2.0748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695813343.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:57 Heat of formation + Delta-G solvation = -75.534456 kcal Electronic energy + Delta-G solvation = -19709.347392 eV Core-core repulsion = 16643.991249 eV Total energy + Delta-G solvation = -3065.356142 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.34035 -38.95538 -36.26746 -34.71368 -33.63333 -32.33431 -31.50044 -29.15051 -27.07500 -26.89323 -24.15439 -23.03394 -21.49182 -20.87887 -19.89832 -17.86041 -17.11483 -16.78186 -16.40355 -15.63061 -15.38072 -14.99045 -14.13026 -13.93867 -13.69268 -13.43363 -13.14400 -13.07407 -12.86505 -12.25032 -12.23596 -11.89031 -11.67531 -11.54412 -11.29671 -11.13163 -10.90188 -10.67465 -10.62329 -10.09554 -9.94629 -9.74934 -9.47351 -8.79986 -8.52877 -8.32275 -7.55379 -6.34497 -4.02804 0.91457 1.57308 2.96431 3.23874 3.47215 3.49299 3.67721 3.79269 3.96029 4.57198 4.83916 4.89227 5.10826 5.20122 5.43156 5.45559 5.62431 5.64073 5.71947 5.76316 5.81302 5.86114 5.96466 6.19369 6.26222 6.31414 6.49089 6.53352 6.59713 6.63914 6.78201 7.09181 7.21291 7.34665 7.47310 7.61199 8.16364 8.37751 8.47006 8.88950 9.66957 11.06329 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019791 B = 0.005507 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.464867 B = 5083.075816 C = 5644.710979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C 0.197 3.803 4 N -0.880 5.880 5 C -0.167 4.167 6 C -0.093 4.093 7 C -0.111 4.111 8 C -0.076 4.076 9 C 0.502 3.498 10 O -0.514 6.514 11 O -0.327 6.327 12 C 0.101 3.899 13 H 0.076 0.924 14 C -0.168 4.168 15 C 0.010 3.990 16 C -0.595 4.595 17 H 0.048 0.952 18 C 0.017 3.983 19 N -0.913 5.913 20 Si 1.067 2.933 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.287 1.287 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.096 0.904 27 H 0.398 0.602 28 H 0.396 0.604 29 H 0.122 0.878 30 H 0.128 0.872 31 H 0.138 0.862 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.030 0.970 36 H 0.021 0.979 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.111 17.704 8.031 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.104 4.104 3 C 0.094 3.906 4 N -0.422 5.422 5 C -0.190 4.190 6 C -0.112 4.112 7 C -0.131 4.131 8 C -0.077 4.077 9 C 0.348 3.652 10 O -0.405 6.405 11 O -0.243 6.243 12 C 0.046 3.954 13 H 0.094 0.906 14 C -0.225 4.225 15 C -0.026 4.026 16 C -0.633 4.633 17 H 0.066 0.934 18 C -0.187 4.187 19 N -0.549 5.549 20 Si 0.895 3.105 21 H -0.207 1.207 22 H -0.215 1.215 23 H -0.214 1.214 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.114 0.886 27 H 0.228 0.772 28 H 0.224 0.776 29 H 0.140 0.860 30 H 0.146 0.854 31 H 0.156 0.844 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.039 0.961 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.938 17.152 6.544 18.382 hybrid contribution -0.744 0.803 1.553 1.901 sum -1.682 17.956 8.098 19.769 Atomic orbital electron populations 1.20909 0.90293 1.02418 1.03259 1.19413 0.96443 0.90207 1.04340 1.17358 0.91126 0.85966 0.96181 1.42476 1.09058 1.04628 1.85990 1.20749 0.91822 0.98787 1.07636 1.20851 0.99893 0.91468 0.98953 1.21330 0.92737 0.99181 0.99856 1.18857 0.93583 0.89905 1.05401 1.21139 0.85884 0.85352 0.72875 1.90699 1.15186 1.87996 1.46663 1.86640 1.41520 1.14539 1.81582 1.22972 0.95708 0.81452 0.95231 0.90595 1.22250 1.02063 1.01270 0.96915 1.19417 0.95898 0.92052 0.95265 1.21930 1.41725 1.07054 0.92570 0.93409 1.25797 0.93329 0.94134 1.05403 1.70797 1.42546 1.20820 1.20785 0.83574 0.76440 0.75616 0.74875 1.20718 1.21466 1.21369 0.91172 0.93215 0.88554 0.77191 0.77562 0.85961 0.85366 0.84380 0.93178 0.91173 0.92129 0.95221 0.96114 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 8.44 36.01 0.30 -1.24 16 2 C -0.10 -1.47 5.93 -103.99 -0.62 -2.09 16 3 C 0.20 2.39 6.73 -83.83 -0.56 1.83 16 4 N -0.88 -7.50 8.99 32.39 0.29 -7.21 16 5 C -0.17 -1.89 9.89 -39.29 -0.39 -2.27 16 6 C -0.09 -1.15 10.02 -39.67 -0.40 -1.55 16 7 C -0.11 -1.71 9.61 -39.15 -0.38 -2.08 16 8 C -0.08 -1.30 5.87 -105.01 -0.62 -1.91 16 9 C 0.50 10.13 7.81 34.62 0.27 10.40 16 10 O -0.51 -10.75 12.59 -19.24 -0.24 -10.99 16 11 O -0.33 -7.23 8.91 -40.52 -0.36 -7.59 16 12 C 0.10 2.25 2.51 -26.73 -0.07 2.18 16 13 H 0.08 1.78 7.16 -51.93 -0.37 1.41 16 14 C -0.17 -3.06 9.55 37.16 0.35 -2.71 16 15 C 0.01 0.27 4.00 -27.88 -0.11 0.16 16 16 C -0.59 -17.30 8.89 -34.44 -0.31 -17.61 16 17 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 18 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 19 N -0.91 -28.05 13.65 55.43 0.76 -27.30 16 20 Si 1.07 25.95 29.90 -169.99 -5.08 20.87 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.53 6.23 -51.93 -0.32 0.20 16 26 H 0.10 1.58 5.84 -51.93 -0.30 1.28 16 27 H 0.40 3.01 6.69 -40.82 -0.27 2.73 16 28 H 0.40 2.40 8.84 -40.82 -0.36 2.04 16 29 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 30 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.14 2.17 7.62 -52.48 -0.40 1.77 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.03 0.78 8.01 -51.93 -0.42 0.36 16 36 H 0.02 0.56 8.00 -51.93 -0.42 0.14 16 37 H 0.27 8.13 7.22 -40.82 -0.29 7.83 16 LS Contribution 312.12 15.07 4.70 4.70 Total: -1.00 -33.05 312.12 -7.45 -40.49 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -4.90 Total: 3.52 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -2.61 Total: -16.49 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 1.05 Total: -34.51 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.60 Total: -18.58 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.08 Total: 20.87 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.05 -7.45 -40.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813343.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.043 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds