Wall clock time and date at job start Mon Mar 30 2020 07:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38663 * 120.11531 * 2 1 4 4 N 1.39713 * 120.00099 * 0.02562 * 3 2 1 5 5 C 1.38990 * 120.00082 * 180.02562 * 3 2 1 6 6 C 1.38260 * 120.22563 * 359.97438 * 5 3 2 7 7 C 1.37970 * 120.23180 * 359.76629 * 6 5 3 8 8 C 1.39508 * 120.11808 * 180.02562 * 2 1 3 9 9 C 1.47749 * 120.11191 * 359.97438 * 8 2 1 10 10 O 1.21469 * 119.99743 * 354.09392 * 9 8 2 11 11 O 1.34712 * 120.00009 * 174.10136 * 9 8 2 12 12 C 1.45191 * 117.00055 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47563 * 29.99282 * 12 11 9 14 14 C 1.53001 * 109.46933 * 269.99627 * 12 11 9 15 15 C 1.52997 * 109.47219 * 149.99929 * 12 11 9 16 16 C 1.50703 * 109.46886 * 294.99820 * 15 12 11 17 17 H 1.08001 * 120.00180 * 359.97438 * 16 15 12 18 18 C 1.37881 * 119.99881 * 180.02562 * 16 15 12 19 19 N 1.31509 * 119.99954 * 359.72577 * 18 16 15 20 20 Si 1.86803 * 119.99974 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47227 * 179.72588 * 20 18 16 22 22 H 1.48505 * 109.46866 * 299.72536 * 20 18 16 23 23 H 1.48497 * 109.46852 * 59.72408 * 20 18 16 24 24 H 1.09003 * 109.46644 * 263.47410 * 1 2 3 25 25 H 1.08993 * 109.47325 * 23.47340 * 1 2 3 26 26 H 1.08992 * 109.47028 * 143.47759 * 1 2 3 27 27 H 0.96999 * 119.99828 * 0.02562 * 4 3 2 28 28 H 0.97001 * 119.99907 * 179.97438 * 4 3 2 29 29 H 1.07998 * 119.89018 * 180.02562 * 5 3 2 30 30 H 1.07998 * 119.88033 * 180.02562 * 6 5 3 31 31 H 1.08007 * 119.99755 * 180.27327 * 7 6 5 32 32 H 1.09004 * 109.47404 * 60.00118 * 14 12 11 33 33 H 1.09000 * 109.47394 * 179.97438 * 14 12 11 34 34 H 1.08998 * 109.47331 * 299.99800 * 14 12 11 35 35 H 1.09003 * 109.47374 * 174.99866 * 15 12 11 36 36 H 1.08998 * 109.47363 * 54.99564 * 15 12 11 37 37 H 0.97002 * 120.00205 * 0.27673 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2028 1.1995 0.0000 4 7 1.5067 2.4108 0.0005 5 6 3.5927 1.1967 -0.0005 6 6 4.2863 0.0007 -0.0005 7 6 3.6036 -1.1983 0.0049 8 6 2.2071 -1.2067 -0.0005 9 6 1.4735 -2.4892 -0.0005 10 8 0.2637 -2.4969 0.1082 11 8 2.1463 -3.6501 -0.1210 12 6 1.3609 -4.8711 -0.1125 13 1 0.3738 -4.6712 -0.5295 14 6 1.2149 -5.3737 1.3252 15 6 2.0647 -5.9361 -0.9560 16 6 2.0991 -5.4942 -2.3963 17 1 1.6623 -4.5485 -2.6817 18 6 2.6874 -6.2976 -3.3500 19 7 3.2231 -7.4471 -3.0019 20 14 2.7295 -5.7502 -5.1356 21 1 3.4180 -6.7809 -5.9532 22 1 1.3411 -5.5712 -5.6313 23 1 3.4627 -4.4632 -5.2415 24 1 -0.3633 -0.1168 1.0211 25 1 -0.3633 0.9425 -0.4093 26 1 -0.3633 -0.8258 -0.6116 27 1 0.5367 2.4128 0.0013 28 1 1.9934 3.2499 0.0009 29 1 4.1328 2.1319 -0.0001 30 1 5.3663 0.0050 -0.0005 31 1 4.1493 -2.1304 0.0093 32 1 0.7134 -4.6150 1.9262 33 1 0.6248 -6.2901 1.3316 34 1 2.2019 -5.5737 1.7422 35 1 1.5223 -6.8784 -0.8779 36 1 3.0835 -6.0721 -0.5932 37 1 3.2009 -7.7315 -2.0748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813343.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:57 Heat of formation + Delta-G solvation = -95.853831 kcal Electronic energy + Delta-G solvation = -19710.228506 eV Core-core repulsion = 16643.991249 eV Total energy + Delta-G solvation = -3066.237257 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.75262 -40.19349 -37.91894 -35.87133 -35.51405 -33.52701 -33.26119 -30.19141 -29.05243 -27.93982 -25.58933 -24.98668 -22.87911 -22.05219 -21.54575 -19.22633 -18.99609 -18.01429 -17.80658 -17.06317 -16.54415 -16.24602 -15.68404 -15.42202 -15.18098 -14.87317 -14.72863 -14.59318 -14.23214 -13.63719 -13.47321 -13.35985 -13.23558 -13.17560 -12.77575 -12.76901 -12.53567 -12.14206 -11.96939 -11.72418 -11.64259 -11.57964 -11.06594 -10.67889 -10.57765 -9.87004 -8.71181 -8.45297 -6.40354 -0.26398 0.54099 1.49329 1.56292 1.57921 1.76177 1.77936 2.53354 2.84199 2.98640 3.13728 3.63208 3.85956 3.90000 4.04212 4.09355 4.10887 4.26860 4.47271 4.60535 4.66942 4.73915 4.76695 4.77392 4.82016 4.95833 5.08822 5.12221 5.20347 5.25618 5.49570 5.51200 5.66661 5.84373 5.91198 6.12048 6.52022 6.53994 6.78540 7.00455 7.37153 8.70612 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019791 B = 0.005507 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.464867 B = 5083.075816 C = 5644.710979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.118 4.118 3 C 0.204 3.796 4 N -0.863 5.863 5 C -0.155 4.155 6 C -0.086 4.086 7 C -0.133 4.133 8 C -0.106 4.106 9 C 0.494 3.506 10 O -0.530 6.530 11 O -0.344 6.344 12 C 0.103 3.897 13 H 0.058 0.942 14 C -0.156 4.156 15 C 0.014 3.986 16 C -0.611 4.611 17 H 0.035 0.965 18 C -0.031 4.031 19 N -0.932 5.932 20 Si 1.111 2.889 21 H -0.276 1.276 22 H -0.272 1.272 23 H -0.273 1.273 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.404 0.596 28 H 0.413 0.587 29 H 0.163 0.837 30 H 0.158 0.842 31 H 0.122 0.878 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.006 0.994 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.519 20.762 7.919 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.123 4.123 3 C 0.098 3.902 4 N -0.405 5.405 5 C -0.178 4.178 6 C -0.104 4.104 7 C -0.153 4.153 8 C -0.107 4.107 9 C 0.342 3.658 10 O -0.423 6.423 11 O -0.260 6.260 12 C 0.048 3.952 13 H 0.076 0.924 14 C -0.213 4.213 15 C -0.023 4.023 16 C -0.649 4.649 17 H 0.053 0.947 18 C -0.229 4.229 19 N -0.569 5.569 20 Si 0.932 3.068 21 H -0.201 1.201 22 H -0.197 1.197 23 H -0.198 1.198 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.235 0.765 28 H 0.244 0.756 29 H 0.181 0.819 30 H 0.176 0.824 31 H 0.140 0.860 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.024 0.976 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.364 20.252 6.461 21.261 hybrid contribution -0.922 -0.019 1.627 1.871 sum -1.287 20.233 8.088 21.828 Atomic orbital electron populations 1.20814 0.90088 1.02743 1.02721 1.19551 0.96844 0.90510 1.05381 1.17447 0.91750 0.86104 0.94868 1.42443 1.09537 1.04084 1.84470 1.21200 0.91520 0.99930 1.05128 1.21179 1.01380 0.90560 0.97311 1.21334 0.92178 1.00117 1.01677 1.18879 0.94358 0.88927 1.08572 1.21843 0.86087 0.85687 0.72225 1.90679 1.15843 1.88152 1.47636 1.86618 1.42018 1.15124 1.82267 1.22740 0.94054 0.81254 0.97106 0.92401 1.22151 1.03038 1.02066 0.94088 1.19293 0.95300 0.93062 0.94646 1.22230 1.41628 1.06611 0.94419 0.94689 1.27270 0.92392 0.93604 1.09604 1.70915 1.43925 1.21811 1.20287 0.83016 0.77559 0.75930 0.70258 1.20065 1.19735 1.19800 0.91286 0.90029 0.91851 0.76455 0.75629 0.81948 0.82415 0.86020 0.92106 0.89600 0.91279 0.95832 0.97565 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.90 8.44 71.24 0.60 -2.30 16 2 C -0.12 -3.39 5.93 -19.45 -0.12 -3.51 16 3 C 0.20 4.33 6.73 38.17 0.26 4.59 16 4 N -0.86 -11.25 8.99 -51.45 -0.46 -11.71 16 5 C -0.16 -2.88 9.89 22.46 0.22 -2.65 16 6 C -0.09 -1.90 10.02 22.21 0.22 -1.68 16 7 C -0.13 -4.09 9.61 22.55 0.22 -3.87 16 8 C -0.11 -3.69 5.87 -20.11 -0.12 -3.81 16 9 C 0.49 20.88 7.81 70.34 0.55 21.43 16 10 O -0.53 -23.26 12.59 19.94 0.25 -23.01 16 11 O -0.34 -15.95 8.91 -56.22 -0.50 -16.45 16 12 C 0.10 4.79 2.51 30.59 0.08 4.87 16 13 H 0.06 2.86 7.16 -2.39 -0.02 2.84 16 14 C -0.16 -5.76 9.55 71.98 0.69 -5.07 16 15 C 0.01 0.75 4.00 29.85 0.12 0.87 16 16 C -0.61 -36.67 8.89 25.60 0.23 -36.44 16 17 H 0.03 2.14 7.74 -2.91 -0.02 2.12 16 18 C -0.03 -1.83 5.46 84.66 0.46 -1.37 16 19 N -0.93 -58.29 13.65 21.45 0.29 -58.00 16 20 Si 1.11 52.25 29.90 68.60 2.05 54.30 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 24 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.08 1.58 6.23 -2.39 -0.01 1.57 16 26 H 0.06 2.15 5.84 -2.39 -0.01 2.14 16 27 H 0.40 4.60 6.69 -92.71 -0.62 3.98 16 28 H 0.41 3.00 8.84 -92.71 -0.82 2.18 16 29 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 30 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 31 H 0.12 4.03 7.62 -2.91 -0.02 4.00 16 32 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.02 1.29 8.01 -2.39 -0.02 1.27 16 36 H 0.01 0.34 8.00 -2.39 -0.02 0.32 16 37 H 0.26 16.15 7.22 -92.71 -0.67 15.48 16 Total: -1.00 -74.02 312.12 4.80 -69.22 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -0.24 Total: 14.61 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: 3.41 Total: -28.95 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -0.17 Total: -69.71 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -0.25 Total: -39.46 kcal Atomic # 14 Polarization: 52.25 SS G_CDS: 2.05 Total: 54.30 kcal Total: -74.02 4.80 -69.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813343.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.634 kcal (2) G-P(sol) polarization free energy of solvation -74.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds