Wall clock time and date at job start Mon Mar 30 2020 07:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37990 * 119.96196 * 2 1 4 4 C 1.38585 * 120.43409 * 179.72227 * 3 2 1 5 5 C 1.37764 * 120.35999 * 0.25676 * 4 3 2 6 6 C 1.39763 * 119.92252 * 359.97438 * 5 4 3 7 7 C 1.47292 * 120.21820 * 179.97438 * 6 5 4 8 8 O 1.21521 * 120.00418 * 185.93063 * 7 6 5 9 9 O 1.34766 * 119.99864 * 5.93458 * 7 6 5 10 10 C 1.45196 * 117.00076 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47093 * 329.99061 * 10 9 7 12 12 C 1.53000 * 109.47613 * 89.99462 * 10 9 7 13 13 C 1.53011 * 109.46993 * 209.99618 * 10 9 7 14 14 C 1.50703 * 109.47030 * 64.99419 * 13 10 9 15 15 H 1.07997 * 119.99988 * 0.02562 * 14 13 10 16 16 C 1.37878 * 119.99820 * 179.97438 * 14 13 10 17 17 N 1.31508 * 119.99806 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 119.99950 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47099 * 89.99945 * 18 16 14 20 20 H 1.48499 * 109.47163 * 209.99563 * 18 16 14 21 21 H 1.48495 * 109.47472 * 329.99974 * 18 16 14 22 22 C 1.38914 * 119.96484 * 180.23274 * 2 1 3 23 23 N 1.38837 * 120.18231 * 0.02562 * 22 2 1 24 24 H 1.09002 * 109.46774 * 89.99824 * 1 2 3 25 25 H 1.09002 * 109.47020 * 209.99478 * 1 2 3 26 26 H 1.08993 * 109.47381 * 330.00112 * 1 2 3 27 27 H 1.08000 * 119.78397 * 0.02562 * 3 2 1 28 28 H 1.07996 * 119.82309 * 180.23745 * 4 3 2 29 29 H 1.08004 * 120.04086 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47154 * 179.97438 * 12 10 9 31 31 H 1.08999 * 109.46867 * 300.00398 * 12 10 9 32 32 H 1.09003 * 109.47062 * 59.99932 * 12 10 9 33 33 H 1.09001 * 109.46662 * 184.99611 * 13 10 9 34 34 H 1.08999 * 109.46735 * 304.99664 * 13 10 9 35 35 H 0.96998 * 120.00126 * 179.97438 * 17 16 14 36 36 H 0.97002 * 120.00196 * 204.25236 * 23 22 2 37 37 H 0.97002 * 120.00562 * 24.24955 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1962 1.1955 0.0000 4 6 3.5820 1.2069 0.0058 5 6 4.2881 0.0240 0.0063 6 6 3.6053 -1.1955 0.0015 7 6 4.3537 -2.4641 0.0014 8 8 3.7613 -3.5191 -0.1115 9 8 5.6955 -2.4549 0.1267 10 6 6.3672 -3.7421 0.1179 11 1 5.7032 -4.5013 0.5311 12 6 6.7364 -4.1150 -1.3193 13 6 7.6381 -3.6599 0.9660 14 6 7.2663 -3.4139 2.4056 15 1 6.2275 -3.3255 2.6874 16 6 8.2523 -3.3028 3.3629 17 7 7.9279 -3.0886 4.6192 18 14 10.0490 -3.4565 2.8754 19 1 10.5835 -2.1158 2.5257 20 1 10.8239 -4.0174 4.0112 21 1 10.1681 -4.3583 1.7017 22 6 2.2009 -1.2035 -0.0049 23 7 1.5098 -2.4076 -0.0103 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6521 2.1284 0.0004 28 1 4.1113 2.1482 0.0096 29 1 5.3680 0.0389 0.0112 30 1 7.2411 -5.0811 -1.3258 31 1 5.8311 -4.1735 -1.9235 32 1 7.4005 -3.3558 -1.7325 33 1 8.1882 -4.5977 0.8879 34 1 8.2622 -2.8416 0.6069 35 1 8.6215 -3.0108 5.2928 36 1 1.9325 -3.2110 0.3315 37 1 0.6042 -2.4456 -0.3558 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695813455.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:01 Heat of formation + Delta-G solvation = -72.069748 kcal Electronic energy + Delta-G solvation = -19681.530966 eV Core-core repulsion = 16616.325065 eV Total energy + Delta-G solvation = -3065.205901 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.30722 -38.85502 -36.24897 -34.48009 -33.35566 -32.55993 -31.61817 -29.15061 -27.97362 -26.72003 -24.33515 -22.90603 -21.26079 -20.82761 -19.75569 -17.34479 -16.93842 -16.76551 -16.65578 -16.11402 -15.21325 -14.52122 -14.38880 -14.16585 -13.76624 -13.54571 -13.04713 -12.99638 -12.67310 -12.40719 -12.25827 -12.01505 -11.79607 -11.74851 -11.55153 -11.16705 -10.90523 -10.63703 -10.48014 -10.07555 -9.90560 -9.78731 -9.41334 -9.21536 -8.72619 -8.54465 -7.51398 -6.03461 -4.01787 1.01824 1.64532 2.96845 3.30438 3.33053 3.38636 3.39668 4.00371 4.04607 4.44236 4.82271 4.92327 5.12432 5.26317 5.31483 5.43206 5.50885 5.58745 5.61666 5.64521 5.72211 5.85585 5.92058 6.13481 6.23370 6.33443 6.42509 6.47416 6.57502 6.62885 6.88599 7.00712 7.05273 7.34575 7.58625 7.72892 7.98672 8.38980 8.52320 9.00670 9.56834 11.10094 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024391 B = 0.005120 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.708570 B = 5467.485549 C = 5857.420250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.182 4.182 3 C -0.046 4.046 4 C -0.189 4.189 5 C -0.017 4.017 6 C -0.198 4.198 7 C 0.516 3.484 8 O -0.532 6.532 9 O -0.328 6.328 10 C 0.102 3.898 11 H 0.080 0.920 12 C -0.169 4.169 13 C -0.012 4.012 14 C -0.516 4.516 15 H 0.071 0.929 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.879 3.121 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.266 1.266 22 C 0.276 3.724 23 N -0.860 5.860 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.139 0.861 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.038 0.962 34 H 0.025 0.975 35 H 0.263 0.737 36 H 0.414 0.586 37 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.685 6.525 -11.832 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.186 4.186 3 C -0.064 4.064 4 C -0.209 4.209 5 C -0.035 4.035 6 C -0.204 4.204 7 C 0.364 3.636 8 O -0.425 6.425 9 O -0.243 6.243 10 C 0.048 3.952 11 H 0.098 0.902 12 C -0.226 4.226 13 C -0.050 4.050 14 C -0.554 4.554 15 H 0.089 0.911 16 C -0.133 4.133 17 N -0.540 5.540 18 Si 0.706 3.294 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.191 1.191 22 C 0.166 3.834 23 N -0.406 5.406 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.141 0.859 28 H 0.143 0.857 29 H 0.157 0.843 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.252 0.748 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -11.683 6.185 -11.662 17.628 hybrid contribution 0.839 -0.443 -0.035 0.950 sum -10.844 5.742 -11.697 16.952 Atomic orbital electron populations 1.20573 0.91000 1.02683 1.01680 1.19400 0.95940 0.91571 1.11737 1.20985 0.94227 0.96737 0.94495 1.20860 0.93919 0.98017 1.08112 1.21353 1.00737 0.90669 0.90790 1.18813 0.91182 0.92086 1.18306 1.20898 0.82121 0.88597 0.72004 1.90539 1.69662 1.33580 1.48728 1.86637 1.19056 1.36901 1.81703 1.22871 0.95186 0.82101 0.95048 0.90229 1.22263 1.01447 1.01991 0.96924 1.19781 0.91591 0.97659 0.95923 1.20996 0.95363 1.49312 0.89737 0.91100 1.24992 0.98945 0.94575 0.94818 1.69910 1.33372 1.49748 1.00956 0.86794 0.85425 0.78835 0.78309 1.20153 1.21348 1.19061 1.17460 0.89119 0.86873 0.89909 1.42936 1.18134 1.09432 1.70071 0.91892 0.91935 0.91480 0.85922 0.85689 0.84333 0.91138 0.93048 0.92122 0.94371 0.95707 0.92711 0.74818 0.77842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 9.43 36.01 0.34 -0.57 16 2 C -0.18 -2.23 5.89 -104.46 -0.62 -2.85 16 3 C -0.05 -0.52 9.68 -39.54 -0.38 -0.91 16 4 C -0.19 -2.39 10.02 -39.63 -0.40 -2.79 16 5 C -0.02 -0.26 9.61 -39.19 -0.38 -0.64 16 6 C -0.20 -3.40 5.89 -104.82 -0.62 -4.02 16 7 C 0.52 10.33 7.84 34.41 0.27 10.60 16 8 O -0.53 -10.91 13.07 -19.28 -0.25 -11.16 16 9 O -0.33 -7.05 8.91 -40.67 -0.36 -7.42 16 10 C 0.10 2.18 2.51 -26.73 -0.07 2.12 16 11 H 0.08 1.80 7.16 -51.93 -0.37 1.43 16 12 C -0.17 -2.90 9.55 37.16 0.35 -2.54 16 13 C -0.01 -0.30 3.76 -27.88 -0.10 -0.40 16 14 C -0.52 -14.94 9.44 -34.44 -0.33 -15.27 16 15 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 18 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 22 C 0.28 4.10 6.74 -83.61 -0.56 3.54 16 23 N -0.86 -11.50 8.12 32.55 0.26 -11.24 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.53 6.99 -51.93 -0.36 0.17 16 26 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 27 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.14 2.14 7.62 -52.48 -0.40 1.74 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.89 7.20 -51.93 -0.37 0.52 16 34 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 35 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.41 6.33 6.09 -40.82 -0.25 6.09 16 37 H 0.39 3.97 7.50 -40.82 -0.31 3.67 16 LS Contribution 311.31 15.07 4.69 4.69 Total: -1.00 -32.62 311.31 -7.14 -39.76 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.00 Total: 7.54 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -2.58 Total: -11.84 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 1.04 Total: -38.51 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.61 Total: -18.57 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.62 -7.14 -39.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813455.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.309 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds