Wall clock time and date at job start Mon Mar 30 2020 07:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37990 * 119.96196 * 2 1 4 4 C 1.38585 * 120.43409 * 179.72227 * 3 2 1 5 5 C 1.37764 * 120.35999 * 0.25676 * 4 3 2 6 6 C 1.39763 * 119.92252 * 359.97438 * 5 4 3 7 7 C 1.47292 * 120.21820 * 179.97438 * 6 5 4 8 8 O 1.21521 * 120.00418 * 185.93063 * 7 6 5 9 9 O 1.34766 * 119.99864 * 5.93458 * 7 6 5 10 10 C 1.45196 * 117.00076 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47093 * 329.99061 * 10 9 7 12 12 C 1.53000 * 109.47613 * 89.99462 * 10 9 7 13 13 C 1.53011 * 109.46993 * 209.99618 * 10 9 7 14 14 C 1.50703 * 109.47030 * 64.99419 * 13 10 9 15 15 H 1.07997 * 119.99988 * 0.02562 * 14 13 10 16 16 C 1.37878 * 119.99820 * 179.97438 * 14 13 10 17 17 N 1.31508 * 119.99806 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 119.99950 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47099 * 89.99945 * 18 16 14 20 20 H 1.48499 * 109.47163 * 209.99563 * 18 16 14 21 21 H 1.48495 * 109.47472 * 329.99974 * 18 16 14 22 22 C 1.38914 * 119.96484 * 180.23274 * 2 1 3 23 23 N 1.38837 * 120.18231 * 0.02562 * 22 2 1 24 24 H 1.09002 * 109.46774 * 89.99824 * 1 2 3 25 25 H 1.09002 * 109.47020 * 209.99478 * 1 2 3 26 26 H 1.08993 * 109.47381 * 330.00112 * 1 2 3 27 27 H 1.08000 * 119.78397 * 0.02562 * 3 2 1 28 28 H 1.07996 * 119.82309 * 180.23745 * 4 3 2 29 29 H 1.08004 * 120.04086 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47154 * 179.97438 * 12 10 9 31 31 H 1.08999 * 109.46867 * 300.00398 * 12 10 9 32 32 H 1.09003 * 109.47062 * 59.99932 * 12 10 9 33 33 H 1.09001 * 109.46662 * 184.99611 * 13 10 9 34 34 H 1.08999 * 109.46735 * 304.99664 * 13 10 9 35 35 H 0.96998 * 120.00126 * 179.97438 * 17 16 14 36 36 H 0.97002 * 120.00196 * 204.25236 * 23 22 2 37 37 H 0.97002 * 120.00562 * 24.24955 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1962 1.1955 0.0000 4 6 3.5820 1.2069 0.0058 5 6 4.2881 0.0240 0.0063 6 6 3.6053 -1.1955 0.0015 7 6 4.3537 -2.4641 0.0014 8 8 3.7613 -3.5191 -0.1115 9 8 5.6955 -2.4549 0.1267 10 6 6.3672 -3.7421 0.1179 11 1 5.7032 -4.5013 0.5311 12 6 6.7364 -4.1150 -1.3193 13 6 7.6381 -3.6599 0.9660 14 6 7.2663 -3.4139 2.4056 15 1 6.2275 -3.3255 2.6874 16 6 8.2523 -3.3028 3.3629 17 7 7.9279 -3.0886 4.6192 18 14 10.0490 -3.4565 2.8754 19 1 10.5835 -2.1158 2.5257 20 1 10.8239 -4.0174 4.0112 21 1 10.1681 -4.3583 1.7017 22 6 2.2009 -1.2035 -0.0049 23 7 1.5098 -2.4076 -0.0103 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6521 2.1284 0.0004 28 1 4.1113 2.1482 0.0096 29 1 5.3680 0.0389 0.0112 30 1 7.2411 -5.0811 -1.3258 31 1 5.8311 -4.1735 -1.9235 32 1 7.4005 -3.3558 -1.7325 33 1 8.1882 -4.5977 0.8879 34 1 8.2622 -2.8416 0.6069 35 1 8.6215 -3.0108 5.2928 36 1 1.9325 -3.2110 0.3315 37 1 0.6042 -2.4456 -0.3558 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813455.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:01 Heat of formation + Delta-G solvation = -92.644636 kcal Electronic energy + Delta-G solvation = -19682.423160 eV Core-core repulsion = 16616.325065 eV Total energy + Delta-G solvation = -3066.098096 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.69071 -40.11129 -37.81236 -35.69126 -35.21295 -33.87504 -33.27309 -30.26312 -29.82062 -27.62539 -25.72826 -24.70713 -22.40307 -22.26184 -21.38286 -19.00204 -18.66577 -18.12285 -17.82450 -17.51316 -16.76080 -16.39337 -15.53293 -15.38301 -14.88258 -14.76837 -14.66058 -14.44074 -14.15383 -14.08712 -13.51405 -13.27552 -13.22868 -12.96948 -12.66014 -12.63708 -12.47567 -12.14164 -11.88695 -11.75916 -11.61190 -11.48955 -11.23203 -11.06268 -10.78190 -9.79946 -8.58108 -8.29673 -6.35232 -0.15833 0.58705 1.37210 1.39867 1.51163 1.59300 1.87504 2.36203 2.86745 2.97990 3.05661 3.73431 3.87046 3.96549 4.09357 4.15759 4.35612 4.38547 4.41684 4.60098 4.73098 4.79768 4.87708 4.88134 4.95327 5.01830 5.15227 5.20304 5.28538 5.31590 5.48002 5.57283 5.59216 5.66680 5.94659 6.21765 6.48211 6.68798 6.84860 6.92010 7.27542 8.87924 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024391 B = 0.005120 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.708570 B = 5467.485549 C = 5857.420250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.180 4.180 3 C -0.036 4.036 4 C -0.184 4.184 5 C -0.038 4.038 6 C -0.234 4.234 7 C 0.505 3.495 8 O -0.549 6.549 9 O -0.345 6.345 10 C 0.098 3.902 11 H 0.054 0.946 12 C -0.156 4.156 13 C -0.008 4.008 14 C -0.529 4.529 15 H 0.016 0.984 16 C 0.004 3.996 17 N -0.953 5.953 18 Si 0.957 3.043 19 H -0.265 1.265 20 H -0.284 1.284 21 H -0.238 1.238 22 C 0.262 3.738 23 N -0.857 5.857 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.165 0.835 28 H 0.152 0.848 29 H 0.126 0.874 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.035 0.965 35 H 0.267 0.733 36 H 0.404 0.596 37 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.627 7.932 -13.655 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.184 4.184 3 C -0.054 4.054 4 C -0.204 4.204 5 C -0.057 4.057 6 C -0.241 4.241 7 C 0.355 3.645 8 O -0.443 6.443 9 O -0.261 6.261 10 C 0.044 3.956 11 H 0.072 0.928 12 C -0.214 4.214 13 C -0.045 4.045 14 C -0.566 4.566 15 H 0.035 0.965 16 C -0.193 4.193 17 N -0.593 5.593 18 Si 0.779 3.221 19 H -0.190 1.190 20 H -0.209 1.209 21 H -0.161 1.161 22 C 0.152 3.848 23 N -0.402 5.402 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.182 0.818 28 H 0.170 0.830 29 H 0.144 0.856 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.239 0.761 37 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -11.665 7.596 -13.517 19.403 hybrid contribution 0.635 -0.805 0.599 1.188 sum -11.029 6.791 -12.918 18.293 Atomic orbital electron populations 1.20668 0.88241 1.03763 1.03149 1.19871 0.97898 0.90670 1.09965 1.21490 0.93830 0.98087 0.92030 1.21202 0.94814 0.97817 1.06574 1.21393 1.00469 0.91410 0.92457 1.18935 0.92299 0.91243 1.21592 1.21544 0.81557 0.89812 0.71614 1.90507 1.69613 1.34386 1.49808 1.86610 1.20304 1.36882 1.82288 1.22792 0.93649 0.81777 0.97391 0.92764 1.22168 1.02119 1.03463 0.93603 1.19724 0.93194 0.98519 0.93086 1.21233 0.93073 1.49464 0.92876 0.96532 1.26065 1.04913 0.93840 0.94435 1.70084 1.35444 1.51213 1.02559 0.85572 0.77793 0.79829 0.78926 1.18970 1.20943 1.16120 1.17749 0.88502 0.88285 0.90265 1.42883 1.18744 1.08745 1.69810 0.90092 0.91880 0.89451 0.81788 0.83027 0.85599 0.88995 0.92671 0.90632 0.92714 0.94677 0.92421 0.76087 0.76064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 9.43 71.24 0.67 -0.80 16 2 C -0.18 -4.02 5.89 -19.76 -0.12 -4.14 16 3 C -0.04 -0.71 9.68 22.29 0.22 -0.49 16 4 C -0.18 -4.35 10.02 22.24 0.22 -4.13 16 5 C -0.04 -1.22 9.61 22.53 0.22 -1.00 16 6 C -0.23 -8.41 5.89 -19.99 -0.12 -8.52 16 7 C 0.51 21.47 7.84 70.20 0.55 22.02 16 8 O -0.55 -23.89 13.07 19.77 0.26 -23.63 16 9 O -0.35 -15.64 8.91 -56.77 -0.51 -16.14 16 10 C 0.10 4.31 2.51 30.60 0.08 4.39 16 11 H 0.05 2.60 7.16 -2.39 -0.02 2.58 16 12 C -0.16 -5.19 9.55 71.98 0.69 -4.51 16 13 C -0.01 -0.39 3.76 29.85 0.11 -0.28 16 14 C -0.53 -31.87 9.44 25.60 0.24 -31.63 16 15 H 0.02 1.13 7.99 -2.91 -0.02 1.11 16 16 C 0.00 0.24 5.47 84.66 0.46 0.70 16 17 N -0.95 -61.39 13.96 21.45 0.30 -61.09 16 18 Si 0.96 44.22 27.47 68.60 1.88 46.11 16 19 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.24 -9.88 6.54 99.48 0.65 -9.23 16 22 C 0.26 7.80 6.74 38.73 0.26 8.06 16 23 N -0.86 -23.24 8.12 -50.93 -0.41 -23.66 16 24 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.92 6.99 -2.39 -0.02 0.91 16 26 H 0.09 0.95 8.08 -2.39 -0.02 0.93 16 27 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 28 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 29 H 0.13 4.14 7.62 -2.91 -0.02 4.12 16 30 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.05 2.46 7.20 -2.39 -0.02 2.44 16 34 H 0.03 1.62 7.57 -2.39 -0.02 1.60 16 35 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 36 H 0.40 12.99 6.09 -92.71 -0.56 12.42 16 37 H 0.41 8.03 7.50 -92.71 -0.70 7.34 16 Total: -1.00 -75.23 311.31 4.78 -70.45 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: -0.22 Total: 28.29 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 3.49 Total: -20.32 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -0.11 Total: -84.75 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -0.25 Total: -39.78 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.11 kcal Total: -75.23 4.78 -70.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813455.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.198 kcal (2) G-P(sol) polarization free energy of solvation -75.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds