Wall clock time and date at job start Mon Mar 30 2020 07:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35912 * 116.99853 * 2 1 4 4 C 1.38746 * 120.47495 * 0.02562 * 3 2 1 5 5 N 1.31817 * 120.68155 * 179.97438 * 4 3 2 6 6 C 1.31870 * 121.77904 * 0.02562 * 5 4 3 7 7 C 1.38212 * 120.89267 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.39134 * 180.02562 * 7 6 5 9 9 H 1.08998 * 110.26869 * 157.90699 * 8 7 6 10 10 C 1.54944 * 110.30849 * 279.99980 * 8 7 6 11 11 C 1.55309 * 100.94101 * 155.35933 * 10 8 7 12 12 C 1.54384 * 102.24949 * 325.86750 * 11 10 8 13 13 C 1.53006 * 109.82696 * 140.87090 * 12 11 10 14 14 C 1.50696 * 109.82751 * 261.74707 * 12 11 10 15 15 H 1.08000 * 120.00381 * 359.82380 * 14 12 11 16 16 C 1.37878 * 120.00126 * 179.81486 * 14 12 11 17 17 N 1.31513 * 120.00584 * 180.02562 * 16 14 12 18 18 Si 1.86805 * 119.99833 * 0.02562 * 16 14 12 19 19 H 1.48501 * 109.47034 * 89.99699 * 18 16 14 20 20 H 1.48497 * 109.47279 * 209.99905 * 18 16 14 21 21 H 1.48501 * 109.47237 * 329.99977 * 18 16 14 22 22 O 1.43231 * 107.59269 * 21.35421 * 12 11 10 23 23 C 1.38577 * 119.21909 * 0.29346 * 7 6 5 24 24 H 1.09007 * 109.47526 * 59.99597 * 1 2 3 25 25 H 1.08997 * 109.47506 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47338 * 299.99795 * 1 2 3 27 27 H 1.07997 * 119.66414 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.55739 * 180.02562 * 6 5 4 29 29 H 1.09001 * 111.12569 * 37.44068 * 10 8 7 30 30 H 1.08997 * 111.12563 * 273.27743 * 10 8 7 31 31 H 1.08995 * 110.84832 * 207.67453 * 11 10 8 32 32 H 1.08996 * 111.01826 * 84.13347 * 11 10 8 33 33 H 1.09001 * 109.46801 * 59.99745 * 13 12 11 34 34 H 1.09001 * 109.46998 * 179.97438 * 13 12 11 35 35 H 1.09000 * 109.47050 * 299.99633 * 13 12 11 36 36 H 0.96992 * 120.00504 * 180.02562 * 17 16 14 37 37 H 1.08004 * 120.81167 * 179.70510 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3000 2.3808 0.0005 5 7 1.8941 3.5575 0.0010 6 6 3.2078 3.6721 0.0006 7 6 4.0179 2.5523 0.0000 8 6 5.5180 2.6964 0.0001 9 1 5.9845 1.7893 0.3842 10 6 6.0291 2.9997 -1.4309 11 6 7.3684 3.7215 -1.1187 12 6 7.0354 4.4808 0.1837 13 6 8.2335 4.4314 1.1340 14 6 6.6933 5.9138 -0.1333 15 1 6.7114 6.2597 -1.1562 16 6 6.3571 6.7832 0.8826 17 7 6.0581 8.0337 0.6060 18 14 6.3263 6.1850 2.6520 19 1 7.6652 6.3802 3.2639 20 1 5.3148 6.9566 3.4179 21 1 5.9745 4.7426 2.6808 22 8 5.9096 3.8326 0.7869 23 6 3.4344 1.2953 -0.0062 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2213 2.3269 0.0005 28 1 3.6569 4.6544 0.0014 29 1 5.3422 3.6586 -1.9620 30 1 6.1997 2.0799 -1.9902 31 1 7.6298 4.4162 -1.9168 32 1 8.1709 3.0025 -0.9542 33 1 9.0957 4.8967 0.6561 34 1 7.9924 4.9693 2.0509 35 1 8.4661 3.3934 1.3718 36 1 5.8219 8.6454 1.3207 37 1 4.0428 0.4030 -0.0115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700035561.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:35 Heat of formation + Delta-G solvation = -36.912510 kcal Electronic energy + Delta-G solvation = -20271.203366 eV Core-core repulsion = 17207.521997 eV Total energy + Delta-G solvation = -3063.681369 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.54202 -38.94606 -37.77009 -33.54130 -32.27172 -31.31696 -30.86065 -29.47837 -27.61488 -25.53183 -24.80483 -23.30784 -22.29273 -20.63865 -19.48689 -17.80932 -17.24021 -16.71745 -16.32280 -15.89764 -15.17987 -15.00170 -14.21296 -14.04958 -13.75689 -13.38383 -12.94560 -12.89503 -12.53021 -12.30558 -12.12973 -12.06867 -11.83323 -11.55638 -11.26080 -11.12427 -10.74192 -10.42139 -10.21056 -9.93435 -9.84847 -9.24164 -9.16158 -8.92896 -8.54131 -8.32410 -8.12991 -6.09255 -4.17288 1.31713 1.51537 3.12302 3.37450 3.49238 3.69984 4.00574 4.52974 4.61151 4.72226 4.78948 4.96731 4.97753 5.19650 5.23496 5.28559 5.30328 5.39116 5.44720 5.56897 5.70342 5.95764 6.04400 6.11050 6.17278 6.23115 6.42105 6.49236 6.56517 6.66625 6.70317 6.81950 6.86592 7.20779 7.26967 7.69356 8.19165 8.27387 8.47347 8.91431 9.55981 11.01299 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025999 B = 0.006254 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.718124 B = 4476.218889 C = 4933.450944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.064 3.936 4 C 0.007 3.993 5 N -0.452 5.452 6 C 0.096 3.904 7 C -0.084 4.084 8 C 0.117 3.883 9 H 0.066 0.934 10 C -0.137 4.137 11 C -0.129 4.129 12 C 0.190 3.810 13 C -0.148 4.148 14 C -0.522 4.522 15 H 0.077 0.923 16 C 0.087 3.913 17 N -0.891 5.891 18 Si 0.876 3.124 19 H -0.288 1.288 20 H -0.302 1.302 21 H -0.224 1.224 22 O -0.364 6.364 23 C -0.107 4.107 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.056 0.944 27 H 0.152 0.848 28 H 0.175 0.825 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.046 0.954 35 H 0.033 0.967 36 H 0.265 0.735 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.155 -15.323 -1.825 16.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.018 3.982 4 C -0.150 4.150 5 N -0.161 5.161 6 C -0.061 4.061 7 C -0.086 4.086 8 C 0.058 3.942 9 H 0.083 0.917 10 C -0.175 4.175 11 C -0.167 4.167 12 C 0.153 3.847 13 C -0.205 4.205 14 C -0.559 4.559 15 H 0.095 0.905 16 C -0.118 4.118 17 N -0.528 5.528 18 Si 0.707 3.293 19 H -0.216 1.216 20 H -0.230 1.230 21 H -0.148 1.148 22 O -0.285 6.285 23 C -0.134 4.134 24 H 0.074 0.926 25 H 0.117 0.883 26 H 0.074 0.926 27 H 0.169 0.831 28 H 0.192 0.808 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.749 -14.543 -1.582 16.110 hybrid contribution 0.264 -0.818 0.828 1.193 sum -6.485 -15.360 -0.754 16.690 Atomic orbital electron populations 1.23051 0.78466 1.03866 1.01513 1.86035 1.21271 1.26453 1.89137 1.19937 0.93003 0.85471 0.99833 1.22870 1.00210 0.87564 1.04388 1.67663 1.12577 1.25966 1.09906 1.22924 0.87602 1.00330 0.95256 1.20906 0.97533 0.92681 0.97486 1.21509 0.88145 0.92315 0.92247 0.91658 1.23152 0.98225 1.00142 0.95949 1.23020 0.95580 0.98473 0.99625 1.20129 0.83418 0.92976 0.88180 1.22314 0.99167 0.98945 1.00111 1.21075 1.48516 0.90615 0.95650 0.90451 1.24994 0.92898 0.94307 0.99574 1.69910 1.45064 1.04416 1.33385 0.87074 0.76286 0.81727 0.84257 1.21627 1.23037 1.14797 1.88878 1.50784 1.40279 1.48522 1.20661 0.91468 0.98190 1.03074 0.92570 0.88265 0.92572 0.83123 0.80782 0.90291 0.91552 0.90342 0.92542 0.91991 0.93537 0.94786 0.92553 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.82 101.05 0.99 1.21 16 2 O -0.32 -3.99 10.51 -19.46 -0.20 -4.20 16 3 C 0.06 0.95 6.71 -39.07 -0.26 0.68 16 4 C 0.01 0.11 10.22 -17.37 -0.18 -0.06 16 5 N -0.45 -8.40 10.36 -13.13 -0.14 -8.54 16 6 C 0.10 1.89 10.53 -17.54 -0.18 1.71 16 7 C -0.08 -1.48 5.04 -104.51 -0.53 -2.01 16 8 C 0.12 2.12 3.67 -26.86 -0.10 2.02 16 9 H 0.07 1.06 8.07 -51.93 -0.42 0.64 16 10 C -0.14 -2.31 6.56 -24.48 -0.16 -2.47 16 11 C -0.13 -2.39 6.08 -24.78 -0.15 -2.54 16 12 C 0.19 4.27 0.78 -91.05 -0.07 4.20 16 13 C -0.15 -3.14 8.23 37.16 0.31 -2.83 16 14 C -0.52 -14.07 8.84 -34.44 -0.30 -14.37 16 15 H 0.08 2.25 7.73 -52.49 -0.41 1.84 16 16 C 0.09 2.46 5.45 -17.82 -0.10 2.37 16 17 N -0.89 -26.94 13.96 55.43 0.77 -26.17 16 18 Si 0.88 22.31 23.92 -169.99 -4.07 18.25 16 19 H -0.29 -7.18 6.87 56.52 0.39 -6.79 16 20 H -0.30 -7.89 7.11 56.52 0.40 -7.48 16 21 H -0.22 -5.58 5.37 56.52 0.30 -5.27 16 22 O -0.36 -8.17 6.64 -35.23 -0.23 -8.40 16 23 C -0.11 -1.65 9.80 -39.14 -0.38 -2.03 16 24 H 0.06 0.41 7.68 -51.93 -0.40 0.01 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.42 7.68 -51.93 -0.40 0.02 16 27 H 0.15 1.80 6.32 -52.49 -0.33 1.47 16 28 H 0.18 3.85 7.69 -52.49 -0.40 3.44 16 29 H 0.08 1.43 8.05 -51.93 -0.42 1.01 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.48 7.60 -51.93 -0.39 1.08 16 32 H 0.06 0.91 7.85 -51.93 -0.41 0.50 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.05 1.06 3.20 -51.93 -0.17 0.89 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 297.26 15.07 4.48 4.48 Total: -1.00 -31.44 297.26 -5.61 -37.05 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.10 Total: 1.67 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -1.12 Total: -14.14 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.64 Total: -34.71 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.44 Total: -12.60 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.07 Total: 18.25 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.44 -5.61 -37.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700035561.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.134 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds