Wall clock time and date at job start Mon Mar 30 2020 07:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35912 * 116.99853 * 2 1 4 4 C 1.38746 * 120.47495 * 0.02562 * 3 2 1 5 5 N 1.31817 * 120.68155 * 179.97438 * 4 3 2 6 6 C 1.31870 * 121.77904 * 0.02562 * 5 4 3 7 7 C 1.38212 * 120.89267 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.39134 * 180.02562 * 7 6 5 9 9 H 1.08998 * 110.26869 * 157.90699 * 8 7 6 10 10 C 1.54944 * 110.30849 * 279.99980 * 8 7 6 11 11 C 1.55309 * 100.94101 * 155.35933 * 10 8 7 12 12 C 1.54384 * 102.24949 * 325.86750 * 11 10 8 13 13 C 1.53006 * 109.82696 * 140.87090 * 12 11 10 14 14 C 1.50696 * 109.82751 * 261.74707 * 12 11 10 15 15 H 1.08000 * 120.00381 * 359.82380 * 14 12 11 16 16 C 1.37878 * 120.00126 * 179.81486 * 14 12 11 17 17 N 1.31513 * 120.00584 * 180.02562 * 16 14 12 18 18 Si 1.86805 * 119.99833 * 0.02562 * 16 14 12 19 19 H 1.48501 * 109.47034 * 89.99699 * 18 16 14 20 20 H 1.48497 * 109.47279 * 209.99905 * 18 16 14 21 21 H 1.48501 * 109.47237 * 329.99977 * 18 16 14 22 22 O 1.43231 * 107.59269 * 21.35421 * 12 11 10 23 23 C 1.38577 * 119.21909 * 0.29346 * 7 6 5 24 24 H 1.09007 * 109.47526 * 59.99597 * 1 2 3 25 25 H 1.08997 * 109.47506 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47338 * 299.99795 * 1 2 3 27 27 H 1.07997 * 119.66414 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.55739 * 180.02562 * 6 5 4 29 29 H 1.09001 * 111.12569 * 37.44068 * 10 8 7 30 30 H 1.08997 * 111.12563 * 273.27743 * 10 8 7 31 31 H 1.08995 * 110.84832 * 207.67453 * 11 10 8 32 32 H 1.08996 * 111.01826 * 84.13347 * 11 10 8 33 33 H 1.09001 * 109.46801 * 59.99745 * 13 12 11 34 34 H 1.09001 * 109.46998 * 179.97438 * 13 12 11 35 35 H 1.09000 * 109.47050 * 299.99633 * 13 12 11 36 36 H 0.96992 * 120.00504 * 180.02562 * 17 16 14 37 37 H 1.08004 * 120.81167 * 179.70510 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3000 2.3808 0.0005 5 7 1.8941 3.5575 0.0010 6 6 3.2078 3.6721 0.0006 7 6 4.0179 2.5523 0.0000 8 6 5.5180 2.6964 0.0001 9 1 5.9845 1.7893 0.3842 10 6 6.0291 2.9997 -1.4309 11 6 7.3684 3.7215 -1.1187 12 6 7.0354 4.4808 0.1837 13 6 8.2335 4.4314 1.1340 14 6 6.6933 5.9138 -0.1333 15 1 6.7114 6.2597 -1.1562 16 6 6.3571 6.7832 0.8826 17 7 6.0581 8.0337 0.6060 18 14 6.3263 6.1850 2.6520 19 1 7.6652 6.3802 3.2639 20 1 5.3148 6.9566 3.4179 21 1 5.9745 4.7426 2.6808 22 8 5.9096 3.8326 0.7869 23 6 3.4344 1.2953 -0.0062 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2213 2.3269 0.0005 28 1 3.6569 4.6544 0.0014 29 1 5.3422 3.6586 -1.9620 30 1 6.1997 2.0799 -1.9902 31 1 7.6298 4.4162 -1.9168 32 1 8.1709 3.0025 -0.9542 33 1 9.0957 4.8967 0.6561 34 1 7.9924 4.9693 2.0509 35 1 8.4661 3.3934 1.3718 36 1 5.8219 8.6454 1.3207 37 1 4.0428 0.4030 -0.0115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700035561.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:34 Heat of formation + Delta-G solvation = -58.918251 kcal Electronic energy + Delta-G solvation = -20272.157607 eV Core-core repulsion = 17207.521997 eV Total energy + Delta-G solvation = -3064.635610 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.76269 -40.39277 -38.95140 -35.25486 -33.97982 -32.96896 -32.20642 -30.90523 -28.45058 -27.24868 -26.49493 -24.58025 -23.64859 -21.97243 -21.22793 -19.06771 -18.86738 -18.08998 -17.60552 -17.01641 -16.79405 -16.44517 -15.79271 -15.36848 -15.11163 -14.81211 -14.63212 -14.27760 -14.05907 -13.90348 -13.73419 -13.46330 -12.88878 -12.76586 -12.72123 -12.41461 -12.37292 -12.18614 -11.89782 -11.75476 -11.48578 -10.85454 -10.70929 -10.57114 -10.37942 -9.93692 -9.40791 -8.30272 -6.38847 0.06620 0.26171 1.31777 1.41545 1.65999 2.17907 2.41588 2.68888 3.00672 3.42085 3.49919 3.62951 3.81723 3.93419 4.02343 4.12873 4.20807 4.30968 4.40290 4.46795 4.57400 4.65382 4.65630 4.74771 4.77049 4.87125 4.92825 5.01567 5.05205 5.20719 5.24099 5.42397 5.51070 5.56976 5.72546 6.21731 6.24840 6.56398 6.80094 6.96323 7.38303 8.84431 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025999 B = 0.006254 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.718124 B = 4476.218889 C = 4933.450944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.319 6.319 3 C 0.078 3.922 4 C 0.006 3.994 5 N -0.479 5.479 6 C 0.065 3.935 7 C -0.090 4.090 8 C 0.111 3.889 9 H 0.100 0.900 10 C -0.129 4.129 11 C -0.125 4.125 12 C 0.183 3.817 13 C -0.148 4.148 14 C -0.515 4.515 15 H 0.039 0.961 16 C 0.033 3.967 17 N -0.943 5.943 18 Si 0.933 3.067 19 H -0.277 1.277 20 H -0.318 1.318 21 H -0.212 1.212 22 O -0.389 6.389 23 C -0.103 4.103 24 H 0.067 0.933 25 H 0.128 0.872 26 H 0.065 0.935 27 H 0.183 0.817 28 H 0.131 0.869 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.070 0.930 36 H 0.263 0.737 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.370 -19.740 -1.482 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.231 6.231 3 C 0.030 3.970 4 C -0.152 4.152 5 N -0.189 5.189 6 C -0.092 4.092 7 C -0.092 4.092 8 C 0.053 3.947 9 H 0.117 0.883 10 C -0.166 4.166 11 C -0.163 4.163 12 C 0.145 3.855 13 C -0.205 4.205 14 C -0.552 4.552 15 H 0.057 0.943 16 C -0.166 4.166 17 N -0.583 5.583 18 Si 0.762 3.238 19 H -0.204 1.204 20 H -0.248 1.248 21 H -0.135 1.135 22 O -0.310 6.310 23 C -0.130 4.130 24 H 0.085 0.915 25 H 0.146 0.854 26 H 0.083 0.917 27 H 0.200 0.800 28 H 0.149 0.851 29 H 0.072 0.928 30 H 0.127 0.873 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -6.949 -18.987 -1.248 20.257 hybrid contribution 0.156 0.418 0.605 0.752 sum -6.793 -18.569 -0.644 19.783 Atomic orbital electron populations 1.23452 0.75983 1.06190 1.02488 1.86054 1.23746 1.24923 1.88419 1.19962 0.93047 0.86101 0.97847 1.23356 1.01726 0.86852 1.03308 1.67550 1.12288 1.28130 1.10899 1.22393 0.88610 0.99472 0.98690 1.20819 0.97159 0.93018 0.98186 1.21831 0.88655 0.91875 0.92312 0.88252 1.23124 0.96525 1.01243 0.95729 1.22980 0.97562 0.98714 0.97036 1.20097 0.83932 0.90651 0.90800 1.22273 0.98471 1.01056 0.98734 1.21435 1.46466 0.93696 0.93633 0.94297 1.25725 0.93177 0.94316 1.03357 1.70051 1.48109 1.05886 1.34281 0.86193 0.76124 0.81493 0.79963 1.20446 1.24753 1.13515 1.88761 1.50832 1.42098 1.49295 1.20900 0.92202 0.97976 1.01888 0.91473 0.85421 0.91684 0.80021 0.85116 0.92841 0.87329 0.91683 0.88861 0.91405 0.95452 0.91139 0.92868 0.81319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.82 113.37 1.11 1.27 16 2 O -0.32 -6.71 10.51 -92.56 -0.97 -7.68 16 3 C 0.08 2.05 6.71 22.60 0.15 2.20 16 4 C 0.01 0.17 10.22 84.82 0.87 1.04 16 5 N -0.48 -17.96 10.36 -195.44 -2.02 -19.99 16 6 C 0.06 2.63 10.53 84.68 0.89 3.52 16 7 C -0.09 -3.05 5.04 -19.79 -0.10 -3.15 16 8 C 0.11 3.77 3.67 30.51 0.11 3.88 16 9 H 0.10 2.73 8.07 -2.39 -0.02 2.71 16 10 C -0.13 -4.07 6.56 32.05 0.21 -3.86 16 11 C -0.13 -4.39 6.08 31.86 0.19 -4.20 16 12 C 0.18 8.08 0.78 -11.07 -0.01 8.07 16 13 C -0.15 -5.95 8.23 71.98 0.59 -5.35 16 14 C -0.51 -28.91 8.84 25.60 0.23 -28.68 16 15 H 0.04 2.41 7.73 -2.91 -0.02 2.39 16 16 C 0.03 1.96 5.45 84.66 0.46 2.42 16 17 N -0.94 -60.35 13.96 21.45 0.30 -60.05 16 18 Si 0.93 47.63 23.92 68.60 1.64 49.27 16 19 H -0.28 -13.45 6.87 99.48 0.68 -12.77 16 20 H -0.32 -16.82 7.11 99.48 0.71 -16.12 16 21 H -0.21 -10.31 5.37 99.48 0.53 -9.78 16 22 O -0.39 -17.08 6.64 -148.98 -0.99 -18.07 16 23 C -0.10 -2.83 9.80 22.56 0.22 -2.61 16 24 H 0.07 0.71 7.68 -2.38 -0.02 0.69 16 25 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.71 7.68 -2.38 -0.02 0.70 16 27 H 0.18 3.82 6.32 -2.91 -0.02 3.80 16 28 H 0.13 6.32 7.69 -2.91 -0.02 6.29 16 29 H 0.05 1.95 8.05 -2.39 -0.02 1.93 16 30 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.06 2.43 7.60 -2.39 -0.02 2.41 16 32 H 0.09 2.60 7.85 -2.39 -0.02 2.58 16 33 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.03 1.19 3.20 -2.39 -0.01 1.18 16 35 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 37 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -72.78 297.26 3.76 -69.03 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.87 Total: 12.94 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 4.93 Total: -25.45 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -1.72 Total: -80.04 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -1.96 Total: -25.76 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 1.64 Total: 49.27 kcal Total: -72.78 3.76 -69.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700035561.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.110 kcal (2) G-P(sol) polarization free energy of solvation -72.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds