Wall clock time and date at job start Mon Mar 30 2020 06:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00056 * 2 1 4 4 H 1.48495 * 109.47096 * 85.07305 * 3 2 1 5 5 H 1.48505 * 109.46980 * 205.06789 * 3 2 1 6 6 H 1.48496 * 109.47602 * 325.07072 * 3 2 1 7 7 C 1.37882 * 119.99717 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99653 * 172.91513 * 7 2 1 9 9 C 1.50706 * 119.99881 * 352.90608 * 7 2 1 10 10 H 1.09001 * 109.50035 * 55.63657 * 9 7 2 11 11 C 1.53118 * 109.50104 * 295.55427 * 9 7 2 12 12 C 1.53125 * 109.15707 * 182.40331 * 11 9 7 13 13 C 1.53041 * 109.27516 * 57.65762 * 12 11 9 14 14 N 1.46844 * 109.52166 * 300.82040 * 13 12 11 15 15 C 1.46903 * 110.99677 * 185.84041 * 14 13 12 16 16 C 1.53001 * 117.49916 * 7.70360 * 15 14 13 17 17 C 1.52996 * 117.49872 * 299.04182 * 15 14 13 18 18 C 1.46841 * 111.20326 * 61.74440 * 14 13 12 19 19 H 1.09006 * 109.46359 * 58.26631 * 18 14 13 20 20 C 1.52997 * 109.46663 * 178.23966 * 18 14 13 21 21 F 1.39898 * 109.47167 * 180.02562 * 20 18 14 22 22 F 1.39901 * 109.47021 * 300.05473 * 20 18 14 23 23 F 1.39901 * 109.46906 * 60.05244 * 20 18 14 24 24 H 0.97004 * 119.99808 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.52797 * 302.31011 * 11 9 7 26 26 H 1.09003 * 109.52236 * 62.50459 * 11 9 7 27 27 H 1.08999 * 109.50272 * 177.59897 * 12 11 9 28 28 H 1.09002 * 109.50322 * 297.71854 * 12 11 9 29 29 H 1.08998 * 109.45964 * 60.83819 * 13 12 11 30 30 H 1.08996 * 109.45986 * 180.80389 * 13 12 11 31 31 H 1.09008 * 115.55027 * 153.36947 * 15 14 13 32 32 H 1.09001 * 117.49813 * 359.97438 * 16 15 14 33 33 H 1.08997 * 117.50138 * 145.02263 * 16 15 14 34 34 H 1.09000 * 117.49806 * 214.98028 * 17 15 14 35 35 H 1.08995 * 117.50113 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3925 2.1065 1.3949 5 1 3.5949 1.4122 -0.5932 6 1 1.5027 2.6204 -0.8016 7 6 2.0045 -1.1941 -0.0005 8 1 3.0783 -1.1976 -0.1159 9 6 1.2595 -2.4943 0.1601 10 1 0.4886 -2.5691 -0.6069 11 6 0.6090 -2.5429 1.5453 12 6 -0.0949 -3.8912 1.7229 13 6 0.9215 -5.0201 1.5368 14 7 1.5150 -4.9302 0.1967 15 6 2.3928 -6.0779 -0.0684 16 6 2.4001 -7.2133 0.9571 17 6 3.6010 -6.2701 0.8503 18 6 2.2366 -3.6637 0.0193 19 1 3.0150 -3.5799 0.7779 20 6 2.8744 -3.6306 -1.3710 21 9 3.5625 -2.4243 -1.5399 22 9 3.7676 -4.6996 -1.4998 23 9 1.8756 -3.7375 -2.3448 24 1 -0.4850 0.8401 0.0004 25 1 1.3753 -2.4284 2.3119 26 1 -0.1197 -1.7372 1.6341 27 1 -0.5238 -3.9488 2.7233 28 1 -0.8870 -3.9887 0.9805 29 1 1.7059 -4.9300 2.2883 30 1 0.4206 -5.9817 1.6485 31 1 2.5108 -6.3470 -1.1181 32 1 1.7539 -7.1086 1.8286 33 1 2.5234 -8.2293 0.5821 34 1 4.5138 -6.6660 0.4051 35 1 3.7448 -5.5448 1.6511 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709939374.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:50 Heat of formation + Delta-G solvation = -117.322730 kcal Electronic energy + Delta-G solvation = -22066.990371 eV Core-core repulsion = 18457.965413 eV Total energy + Delta-G solvation = -3609.024958 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.119 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.22228 -46.78757 -46.55879 -39.33948 -35.90179 -32.82579 -31.43423 -30.15095 -25.94273 -24.90046 -23.11638 -22.52521 -21.10918 -20.29770 -18.95512 -17.56450 -17.35398 -16.93785 -16.21530 -15.78740 -14.97116 -14.54051 -14.09867 -13.70213 -13.45650 -13.12281 -13.03153 -12.95963 -12.84956 -12.76504 -12.73975 -12.28215 -11.87537 -11.50625 -11.39360 -10.97560 -10.80304 -10.66975 -10.56619 -10.28306 -10.08779 -9.87731 -9.64616 -9.27446 -8.79959 -8.37166 -7.94737 -6.05040 -4.07780 3.30522 3.38226 3.42606 3.60948 3.84035 4.12869 4.44766 4.68461 4.96092 5.04088 5.07006 5.09116 5.26979 5.30934 5.50578 5.64896 5.73342 5.84989 5.94711 5.98410 6.12287 6.18927 6.22750 6.30871 6.50797 6.62204 6.96635 7.09999 7.27498 7.43283 7.64781 7.80548 7.96919 8.27283 8.94897 9.56651 11.03990 Molecular weight = 263.12amu Principal moments of inertia in cm(-1) A = 0.024229 B = 0.008932 C = 0.007380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.386091 B = 3134.097911 C = 3793.322607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.069 3.931 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.272 1.272 6 H -0.287 1.287 7 C -0.530 4.530 8 H 0.072 0.928 9 C 0.058 3.942 10 H 0.054 0.946 11 C -0.104 4.104 12 C -0.122 4.122 13 C 0.062 3.938 14 N -0.499 5.499 15 C 0.018 3.982 16 C -0.188 4.188 17 C -0.210 4.210 18 C 0.058 3.942 19 H 0.068 0.932 20 C 0.464 3.536 21 F -0.165 7.165 22 F -0.202 7.202 23 F -0.179 7.179 24 H 0.261 0.739 25 H 0.037 0.963 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.127 0.873 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.517 -10.640 2.216 11.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.133 4.133 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.197 1.197 6 H -0.213 1.213 7 C -0.568 4.568 8 H 0.090 0.910 9 C 0.039 3.961 10 H 0.072 0.928 11 C -0.142 4.142 12 C -0.160 4.160 13 C -0.065 4.065 14 N -0.222 5.222 15 C -0.091 4.091 16 C -0.225 4.225 17 C -0.250 4.250 18 C -0.051 4.051 19 H 0.086 0.914 20 C 0.409 3.591 21 F -0.146 7.146 22 F -0.184 7.184 23 F -0.160 7.160 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.144 0.856 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.974 -10.513 1.832 11.078 hybrid contribution 1.287 0.890 0.393 1.613 sum 4.261 -9.623 2.225 10.757 Atomic orbital electron populations 1.69959 1.05909 1.26631 1.49830 1.24889 0.94723 0.99027 0.94691 0.86612 0.80228 0.83567 0.77898 1.20778 1.19680 1.21251 1.21438 0.94518 0.90137 1.50744 0.90974 1.18812 0.93170 0.88707 0.95416 0.92808 1.21588 0.99530 0.95084 0.97997 1.21749 0.98032 0.95853 1.00364 1.22195 0.97008 0.99708 0.87627 1.61922 1.31311 0.99717 1.29238 1.23150 0.95381 0.93631 0.96983 1.23353 1.01794 0.95496 1.01903 1.23353 0.93839 1.03494 1.04264 1.23029 0.98710 0.93107 0.90302 0.91418 1.20432 0.76225 0.72795 0.89620 1.93185 1.80302 1.45114 1.96040 1.93088 1.70789 1.57636 1.96850 1.93127 1.61184 1.95717 1.65999 0.92957 0.94460 0.89605 0.92765 0.91444 0.95130 0.90783 0.85552 0.88210 0.88662 0.88697 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.72 12.00 55.43 0.66 -24.06 16 2 C 0.07 1.87 5.25 -17.82 -0.09 1.77 16 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.53 -13.98 7.21 -34.44 -0.25 -14.22 16 8 H 0.07 1.91 5.77 -52.49 -0.30 1.60 16 9 C 0.06 1.38 1.55 -91.69 -0.14 1.24 16 10 H 0.05 1.46 7.77 -51.93 -0.40 1.06 16 11 C -0.10 -2.27 5.08 -26.61 -0.14 -2.41 16 12 C -0.12 -2.19 6.09 -26.64 -0.16 -2.35 16 13 C 0.06 1.00 4.13 -3.83 -0.02 0.98 16 14 N -0.50 -8.96 4.64 -218.76 -1.02 -9.98 16 15 C 0.02 0.27 4.31 -67.71 -0.29 -0.02 16 16 C -0.19 -2.33 9.51 -26.69 -0.25 -2.58 16 17 C -0.21 -2.88 8.83 -26.69 -0.24 -3.11 16 18 C 0.06 1.18 1.35 -67.73 -0.09 1.09 16 19 H 0.07 1.38 7.53 -51.93 -0.39 0.99 16 20 C 0.46 9.66 2.63 37.16 0.10 9.75 16 21 F -0.17 -3.74 13.91 2.25 0.03 -3.71 16 22 F -0.20 -3.71 13.48 2.25 0.03 -3.68 16 23 F -0.18 -3.93 16.71 2.25 0.04 -3.90 16 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.09 2.10 6.79 -51.93 -0.35 1.75 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.03 0.48 7.33 -51.93 -0.38 0.10 16 30 H 0.07 1.04 6.52 -51.93 -0.34 0.70 16 31 H 0.13 1.99 7.07 -51.92 -0.37 1.62 16 32 H 0.10 1.19 5.82 -51.93 -0.30 0.89 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 1.31 7.24 -51.93 -0.38 0.93 16 LS Contribution 278.39 15.07 4.20 4.20 Total: -1.00 -27.13 278.39 -7.11 -34.25 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -4.46 Total: 0.64 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -1.57 Total: -9.86 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: -0.35 Total: -34.03 kcal Atomic # 9 Polarization: -11.38 SS G_CDS: 0.10 Total: -11.28 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.13 -7.11 -34.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709939374.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.076 kcal (2) G-P(sol) polarization free energy of solvation -27.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds