Wall clock time and date at job start Mon Mar 30 2020 06:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00056 * 2 1 4 4 H 1.48495 * 109.47096 * 85.07305 * 3 2 1 5 5 H 1.48505 * 109.46980 * 205.06789 * 3 2 1 6 6 H 1.48496 * 109.47602 * 325.07072 * 3 2 1 7 7 C 1.37882 * 119.99717 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99653 * 172.91513 * 7 2 1 9 9 C 1.50706 * 119.99881 * 352.90608 * 7 2 1 10 10 H 1.09001 * 109.50035 * 55.63657 * 9 7 2 11 11 C 1.53118 * 109.50104 * 295.55427 * 9 7 2 12 12 C 1.53125 * 109.15707 * 182.40331 * 11 9 7 13 13 C 1.53041 * 109.27516 * 57.65762 * 12 11 9 14 14 N 1.46844 * 109.52166 * 300.82040 * 13 12 11 15 15 C 1.46903 * 110.99677 * 185.84041 * 14 13 12 16 16 C 1.53001 * 117.49916 * 7.70360 * 15 14 13 17 17 C 1.52996 * 117.49872 * 299.04182 * 15 14 13 18 18 C 1.46841 * 111.20326 * 61.74440 * 14 13 12 19 19 H 1.09006 * 109.46359 * 58.26631 * 18 14 13 20 20 C 1.52997 * 109.46663 * 178.23966 * 18 14 13 21 21 F 1.39898 * 109.47167 * 180.02562 * 20 18 14 22 22 F 1.39901 * 109.47021 * 300.05473 * 20 18 14 23 23 F 1.39901 * 109.46906 * 60.05244 * 20 18 14 24 24 H 0.97004 * 119.99808 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.52797 * 302.31011 * 11 9 7 26 26 H 1.09003 * 109.52236 * 62.50459 * 11 9 7 27 27 H 1.08999 * 109.50272 * 177.59897 * 12 11 9 28 28 H 1.09002 * 109.50322 * 297.71854 * 12 11 9 29 29 H 1.08998 * 109.45964 * 60.83819 * 13 12 11 30 30 H 1.08996 * 109.45986 * 180.80389 * 13 12 11 31 31 H 1.09008 * 115.55027 * 153.36947 * 15 14 13 32 32 H 1.09001 * 117.49813 * 359.97438 * 16 15 14 33 33 H 1.08997 * 117.50138 * 145.02263 * 16 15 14 34 34 H 1.09000 * 117.49806 * 214.98028 * 17 15 14 35 35 H 1.08995 * 117.50113 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3925 2.1065 1.3949 5 1 3.5949 1.4122 -0.5932 6 1 1.5027 2.6204 -0.8016 7 6 2.0045 -1.1941 -0.0005 8 1 3.0783 -1.1976 -0.1159 9 6 1.2595 -2.4943 0.1601 10 1 0.4886 -2.5691 -0.6069 11 6 0.6090 -2.5429 1.5453 12 6 -0.0949 -3.8912 1.7229 13 6 0.9215 -5.0201 1.5368 14 7 1.5150 -4.9302 0.1967 15 6 2.3928 -6.0779 -0.0684 16 6 2.4001 -7.2133 0.9571 17 6 3.6010 -6.2701 0.8503 18 6 2.2366 -3.6637 0.0193 19 1 3.0150 -3.5799 0.7779 20 6 2.8744 -3.6306 -1.3710 21 9 3.5625 -2.4243 -1.5399 22 9 3.7676 -4.6996 -1.4998 23 9 1.8756 -3.7375 -2.3448 24 1 -0.4850 0.8401 0.0004 25 1 1.3753 -2.4284 2.3119 26 1 -0.1197 -1.7372 1.6341 27 1 -0.5238 -3.9488 2.7233 28 1 -0.8870 -3.9887 0.9805 29 1 1.7059 -4.9300 2.2883 30 1 0.4206 -5.9817 1.6485 31 1 2.5108 -6.3470 -1.1181 32 1 1.7539 -7.1086 1.8286 33 1 2.5234 -8.2293 0.5821 34 1 4.5138 -6.6660 0.4051 35 1 3.7448 -5.5448 1.6511 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709939374.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:50 Heat of formation + Delta-G solvation = -132.916300 kcal Electronic energy + Delta-G solvation = -22067.666559 eV Core-core repulsion = 18457.965413 eV Total energy + Delta-G solvation = -3609.701146 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.90595 -48.43168 -48.31449 -40.70229 -37.35126 -34.65890 -32.95389 -31.83581 -27.73638 -26.51228 -24.73612 -23.74280 -22.53883 -21.76868 -20.51313 -19.23039 -19.03598 -18.64640 -18.01344 -17.12802 -16.58884 -16.06043 -15.65591 -15.32280 -15.07674 -14.81462 -14.66524 -14.61800 -14.52372 -14.49856 -14.21508 -13.90554 -13.40676 -13.04143 -12.83632 -12.66765 -12.58227 -12.27165 -11.93156 -11.77988 -11.73527 -11.42207 -11.08155 -10.95061 -10.65336 -10.41664 -9.28419 -8.11436 -6.19225 1.40612 1.43088 1.52762 1.97804 2.40694 2.58418 2.91503 3.09449 3.21642 3.34761 3.58208 3.87143 4.02151 4.07052 4.15827 4.27369 4.27890 4.52387 4.55585 4.73039 4.76221 4.89838 4.97827 5.04895 5.13735 5.22879 5.34406 5.37653 5.68156 5.79983 5.90399 5.99110 6.12959 6.30141 6.89473 7.47430 8.97080 Molecular weight = 263.12amu Principal moments of inertia in cm(-1) A = 0.024229 B = 0.008932 C = 0.007380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.386091 B = 3134.097911 C = 3793.322607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.021 3.979 3 Si 0.944 3.056 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.286 1.286 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.059 3.941 10 H 0.012 0.988 11 C -0.098 4.098 12 C -0.115 4.115 13 C 0.065 3.935 14 N -0.511 5.511 15 C -0.012 4.012 16 C -0.159 4.159 17 C -0.208 4.208 18 C 0.069 3.931 19 H 0.069 0.931 20 C 0.463 3.537 21 F -0.179 7.179 22 F -0.185 7.185 23 F -0.189 7.189 24 H 0.260 0.740 25 H 0.038 0.962 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.341 -12.394 3.358 13.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.770 3.230 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.212 1.212 7 C -0.578 4.578 8 H 0.087 0.913 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.136 4.136 12 C -0.153 4.153 13 C -0.062 4.062 14 N -0.235 5.235 15 C -0.120 4.120 16 C -0.196 4.196 17 C -0.247 4.247 18 C -0.040 4.040 19 H 0.087 0.913 20 C 0.408 3.592 21 F -0.161 7.161 22 F -0.166 7.166 23 F -0.171 7.171 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.123 0.877 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.123 0.877 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.809 -12.282 2.980 13.200 hybrid contribution 1.040 1.381 0.001 1.729 sum 4.849 -10.901 2.981 12.298 Atomic orbital electron populations 1.70077 1.07074 1.27139 1.50977 1.25593 0.95445 1.01995 0.94784 0.85750 0.78967 0.80120 0.78151 1.19867 1.19547 1.21241 1.21768 0.94550 0.91536 1.49964 0.91312 1.18636 0.92716 0.89424 0.95246 0.96988 1.21411 0.98877 0.96629 0.96716 1.21671 0.97890 0.94158 1.01592 1.22258 0.96781 1.00181 0.86967 1.61845 1.31857 0.99252 1.30524 1.23128 0.96967 0.94291 0.97631 1.23468 1.00114 0.95539 1.00436 1.23374 0.94235 1.03874 1.03261 1.22694 0.97811 0.93633 0.89903 0.91280 1.20518 0.76231 0.72723 0.89696 1.93147 1.80571 1.46236 1.96124 1.93115 1.70133 1.56565 1.96792 1.93103 1.61736 1.95757 1.66456 0.93083 0.94299 0.92897 0.89923 0.92842 0.94078 0.87689 0.86287 0.87155 0.86306 0.87652 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.50 12.00 21.45 0.26 -52.24 16 2 C 0.02 1.17 5.25 84.66 0.44 1.62 16 3 Si 0.94 43.82 29.54 68.60 2.03 45.84 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.54 -29.03 7.21 25.60 0.18 -28.84 16 8 H 0.07 3.68 5.77 -2.91 -0.02 3.66 16 9 C 0.06 2.86 1.55 -11.49 -0.02 2.85 16 10 H 0.01 0.68 7.77 -2.39 -0.02 0.66 16 11 C -0.10 -4.33 5.08 30.68 0.16 -4.18 16 12 C -0.12 -3.97 6.09 30.65 0.19 -3.79 16 13 C 0.06 1.91 4.13 86.33 0.36 2.26 16 14 N -0.51 -17.58 4.64 -846.03 -3.93 -21.51 16 15 C -0.01 -0.33 4.31 44.91 0.19 -0.13 16 16 C -0.16 -3.24 9.51 30.62 0.29 -2.95 16 17 C -0.21 -5.03 8.83 30.62 0.27 -4.76 16 18 C 0.07 2.81 1.35 44.94 0.06 2.88 16 19 H 0.07 2.77 7.53 -2.38 -0.02 2.75 16 20 C 0.46 19.27 2.63 71.98 0.19 19.46 16 21 F -0.18 -8.20 13.91 44.97 0.63 -7.58 16 22 F -0.18 -6.58 13.48 44.97 0.61 -5.98 16 23 F -0.19 -8.45 16.71 44.97 0.75 -7.70 16 24 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 25 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.05 2.67 6.79 -2.39 -0.02 2.65 16 27 H 0.08 2.37 8.14 -2.39 -0.02 2.36 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.04 1.15 7.33 -2.39 -0.02 1.13 16 30 H 0.11 2.50 6.52 -2.39 -0.02 2.49 16 31 H 0.12 3.52 7.07 -2.38 -0.02 3.50 16 32 H 0.11 2.06 5.82 -2.39 -0.01 2.05 16 33 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.08 2.17 7.24 -2.39 -0.02 2.16 16 Total: -1.00 -59.49 278.39 3.76 -55.73 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.10 Total: 9.03 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 2.31 Total: -15.59 kcal Atomic # 7 Polarization: -70.08 SS G_CDS: -3.67 Total: -73.75 kcal Atomic # 9 Polarization: -23.24 SS G_CDS: 1.98 Total: -21.26 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -59.49 3.76 -55.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709939374.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.187 kcal (2) G-P(sol) polarization free energy of solvation -59.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds