Wall clock time and date at job start Mon Mar 30 2020 06:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35056 * 119.99796 * 2 1 4 4 C 1.47056 * 120.00063 * 353.33320 * 3 2 1 5 5 C 1.39929 * 120.14604 * 143.54607 * 4 3 2 6 6 C 1.37784 * 119.84676 * 179.97438 * 5 4 3 7 7 C 1.38689 * 120.14834 * 0.02562 * 6 5 4 8 8 F 1.35099 * 119.84862 * 179.97438 * 7 6 5 9 9 C 1.38695 * 120.29999 * 0.23986 * 7 6 5 10 10 C 1.37781 * 120.14307 * 359.48141 * 9 7 6 11 11 C 1.46147 * 120.00156 * 179.97438 * 2 1 3 12 12 O 1.21764 * 120.00411 * 280.22529 * 11 2 1 13 13 N 1.34777 * 119.99589 * 100.22308 * 11 2 1 14 14 C 1.46499 * 120.00320 * 4.89334 * 13 11 2 15 15 C 1.36733 * 119.99913 * 184.89300 * 13 11 2 16 16 H 1.08001 * 120.00113 * 12.03567 * 15 13 11 17 17 C 1.39111 * 119.99802 * 192.04081 * 15 13 11 18 18 N 1.31333 * 120.00349 * 24.68491 * 17 15 13 19 19 Si 1.86797 * 119.99762 * 204.68591 * 17 15 13 20 20 H 1.48508 * 109.47452 * 94.99429 * 19 17 15 21 21 H 1.48499 * 109.47236 * 214.99102 * 19 17 15 22 22 H 1.48503 * 109.47253 * 334.99423 * 19 17 15 23 23 H 1.08997 * 109.47246 * 84.49648 * 1 2 3 24 24 H 1.09000 * 109.46871 * 204.50182 * 1 2 3 25 25 H 1.09001 * 109.46911 * 324.49431 * 1 2 3 26 26 H 1.08003 * 120.00058 * 173.33096 * 3 2 1 27 27 H 1.07998 * 120.07855 * 359.97438 * 5 4 3 28 28 H 1.08001 * 119.92249 * 179.97438 * 6 5 4 29 29 H 1.07999 * 119.92982 * 179.74739 * 9 7 6 30 30 H 1.08003 * 120.07576 * 180.26128 * 10 9 7 31 31 H 1.09003 * 109.47311 * 94.95915 * 14 13 11 32 32 H 1.08999 * 109.47344 * 214.96392 * 14 13 11 33 33 H 1.09007 * 109.47053 * 334.96518 * 14 13 11 34 34 H 0.97000 * 120.00025 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1823 1.1696 0.0000 4 6 1.4544 2.4389 -0.1479 5 6 1.8743 3.5754 0.5521 6 6 1.1881 4.7616 0.4086 7 6 0.0833 4.8304 -0.4269 8 9 -0.5854 5.9964 -0.5627 9 6 -0.3416 3.7063 -1.1193 10 6 0.3390 2.5154 -0.9893 11 6 2.2378 -1.2656 0.0006 12 8 2.3801 -1.8861 1.0386 13 7 2.7541 -1.7461 -1.1479 14 6 2.6767 -0.9501 -2.3754 15 6 3.3502 -2.9765 -1.1675 16 1 3.2397 -3.6436 -0.3254 17 6 4.0991 -3.3690 -2.2722 18 7 4.6433 -2.4633 -3.0521 19 14 4.3307 -5.1844 -2.6462 20 1 3.3072 -5.6219 -3.6293 21 1 5.6860 -5.4044 -3.2118 22 1 4.1829 -5.9705 -1.3949 23 1 -0.3633 0.0986 -1.0229 24 1 -0.3633 -0.9351 0.4262 25 1 -0.3633 0.8366 0.5969 26 1 3.2568 1.1729 0.1086 27 1 2.7343 3.5230 1.2033 28 1 1.5109 5.6394 0.9486 29 1 -1.2051 3.7656 -1.7652 30 1 0.0097 1.6417 -1.5323 31 1 3.6000 -0.3844 -2.5005 32 1 2.5378 -1.6124 -3.2298 33 1 1.8347 -0.2610 -2.3091 34 1 5.1659 -2.7370 -3.8221 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749362465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:54 Heat of formation + Delta-G solvation = -28.796857 kcal Electronic energy + Delta-G solvation = -19064.265581 eV Core-core repulsion = 15877.475828 eV Total energy + Delta-G solvation = -3186.789753 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.93250 -39.40032 -38.36988 -34.86586 -34.36381 -31.62133 -31.31146 -29.87336 -27.02017 -26.30685 -24.84219 -22.92269 -22.70604 -20.70367 -18.12958 -17.51797 -16.94277 -16.47697 -15.73719 -15.64030 -15.54829 -14.79240 -14.33756 -14.24957 -13.85371 -13.68772 -13.21737 -13.19732 -12.64518 -12.41026 -12.14899 -11.74173 -11.57803 -11.43649 -11.37967 -11.13139 -10.96315 -10.89999 -10.39185 -10.29060 -9.41324 -9.15818 -9.06026 -8.49337 -7.84357 -7.83157 -6.44915 -3.84915 0.83220 1.21690 2.35661 3.10978 3.22925 3.28686 3.66589 3.77388 4.09284 4.21339 4.68180 4.75912 4.79774 4.95041 5.15210 5.18737 5.32057 5.42111 5.61617 5.71565 5.90005 5.92510 6.06945 6.09101 6.15003 6.20825 6.28781 6.42935 6.77048 6.79396 6.88280 6.99946 7.14084 7.51072 8.02322 8.41516 9.11378 9.36212 9.92050 10.59409 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.039488 B = 0.004241 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.908057 B = 6601.188989 C = 6807.389983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.126 4.126 4 C -0.043 4.043 5 C -0.084 4.084 6 C -0.153 4.153 7 C 0.085 3.915 8 F -0.145 7.145 9 C -0.152 4.152 10 C -0.088 4.088 11 C 0.464 3.536 12 O -0.591 6.591 13 N -0.429 5.429 14 C 0.111 3.889 15 C -0.316 4.316 16 H 0.105 0.895 17 C 0.035 3.965 18 N -0.866 5.866 19 Si 0.920 3.080 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.267 1.267 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.126 0.874 27 H 0.134 0.866 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.142 0.858 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.031 0.969 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.704 12.148 0.194 14.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.145 4.145 4 C -0.043 4.043 5 C -0.102 4.102 6 C -0.172 4.172 7 C 0.066 3.934 8 F -0.124 7.124 9 C -0.171 4.171 10 C -0.106 4.106 11 C 0.253 3.747 12 O -0.478 6.478 13 N -0.146 5.146 14 C -0.033 4.033 15 C -0.444 4.444 16 H 0.123 0.877 17 C -0.170 4.170 18 N -0.504 5.504 19 Si 0.747 3.253 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.192 1.192 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.144 0.856 27 H 0.152 0.848 28 H 0.151 0.849 29 H 0.152 0.848 30 H 0.159 0.841 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.521 11.876 0.482 14.065 hybrid contribution 0.225 -0.488 -0.446 0.699 sum -7.296 11.387 0.036 13.525 Atomic orbital electron populations 1.21012 0.91333 1.03048 1.01693 1.22024 0.96214 0.94091 0.96875 1.21785 0.99206 0.89556 1.03970 1.19127 0.95077 0.93733 0.96387 1.21237 0.99512 0.91132 0.98294 1.21024 0.96050 0.99554 1.00562 1.17855 0.93575 0.81808 1.00188 1.91473 1.79595 1.46531 1.94798 1.21052 1.02143 0.92095 1.01815 1.21562 0.94156 0.97494 0.97388 1.17711 0.86360 0.86300 0.84376 1.90679 1.64925 1.60850 1.31344 1.43577 1.48058 1.16432 1.06516 1.21530 0.99092 0.94680 0.88005 1.19714 1.29341 0.90705 1.04627 0.87707 1.25273 0.95045 0.99890 0.96775 1.70090 1.29883 1.33635 1.16774 0.86003 0.77495 0.82822 0.79014 1.20300 1.20969 1.19161 0.90905 0.91301 0.91164 0.85600 0.84767 0.84936 0.84835 0.84053 0.92222 0.91462 0.95018 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 8.24 36.01 0.30 -1.42 16 2 C -0.09 -1.66 3.83 -102.58 -0.39 -2.05 16 3 C -0.13 -2.09 9.09 -37.14 -0.34 -2.43 16 4 C -0.04 -0.59 5.19 -105.06 -0.54 -1.13 16 5 C -0.08 -1.01 9.79 -39.11 -0.38 -1.39 16 6 C -0.15 -1.71 10.01 -39.58 -0.40 -2.11 16 7 C 0.08 1.01 7.31 -39.25 -0.29 0.72 16 8 F -0.15 -1.77 17.26 2.25 0.04 -1.73 16 9 C -0.15 -1.72 10.01 -39.58 -0.40 -2.11 16 10 C -0.09 -1.08 7.84 -39.11 -0.31 -1.39 16 11 C 0.46 11.39 6.94 -13.09 -0.09 11.30 16 12 O -0.59 -16.88 16.74 5.13 0.09 -16.79 16 13 N -0.43 -10.92 3.02 -123.88 -0.37 -11.29 16 14 C 0.11 2.44 8.48 59.85 0.51 2.94 16 15 C -0.32 -8.76 9.36 -15.04 -0.14 -8.90 16 16 H 0.11 3.07 7.37 -52.49 -0.39 2.68 16 17 C 0.04 0.91 4.88 -17.44 -0.09 0.83 16 18 N -0.87 -22.59 10.82 55.50 0.60 -21.99 16 19 Si 0.92 20.25 29.62 -169.99 -5.03 15.21 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H 0.07 0.93 6.37 -51.93 -0.33 0.60 16 24 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 25 H 0.07 0.93 6.75 -51.93 -0.35 0.58 16 26 H 0.13 2.17 8.06 -52.48 -0.42 1.75 16 27 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 30 H 0.14 1.61 5.36 -52.48 -0.28 1.33 16 31 H 0.06 1.37 7.62 -51.93 -0.40 0.97 16 32 H 0.07 1.54 6.90 -51.93 -0.36 1.18 16 33 H 0.03 0.58 6.52 -51.93 -0.34 0.24 16 34 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 295.25 15.07 4.45 4.45 Total: -1.00 -30.81 295.25 -6.48 -37.28 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -3.69 Total: 1.99 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -2.56 Total: -7.14 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.23 Total: -33.28 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: 0.09 Total: -16.79 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.81 -6.48 -37.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749362465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.487 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds