Wall clock time and date at job start Mon Mar 30 2020 06:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35056 * 119.99796 * 2 1 4 4 C 1.47056 * 120.00063 * 353.33320 * 3 2 1 5 5 C 1.39929 * 120.14604 * 143.54607 * 4 3 2 6 6 C 1.37784 * 119.84676 * 179.97438 * 5 4 3 7 7 C 1.38689 * 120.14834 * 0.02562 * 6 5 4 8 8 F 1.35099 * 119.84862 * 179.97438 * 7 6 5 9 9 C 1.38695 * 120.29999 * 0.23986 * 7 6 5 10 10 C 1.37781 * 120.14307 * 359.48141 * 9 7 6 11 11 C 1.46147 * 120.00156 * 179.97438 * 2 1 3 12 12 O 1.21764 * 120.00411 * 280.22529 * 11 2 1 13 13 N 1.34777 * 119.99589 * 100.22308 * 11 2 1 14 14 C 1.46499 * 120.00320 * 4.89334 * 13 11 2 15 15 C 1.36733 * 119.99913 * 184.89300 * 13 11 2 16 16 H 1.08001 * 120.00113 * 12.03567 * 15 13 11 17 17 C 1.39111 * 119.99802 * 192.04081 * 15 13 11 18 18 N 1.31333 * 120.00349 * 24.68491 * 17 15 13 19 19 Si 1.86797 * 119.99762 * 204.68591 * 17 15 13 20 20 H 1.48508 * 109.47452 * 94.99429 * 19 17 15 21 21 H 1.48499 * 109.47236 * 214.99102 * 19 17 15 22 22 H 1.48503 * 109.47253 * 334.99423 * 19 17 15 23 23 H 1.08997 * 109.47246 * 84.49648 * 1 2 3 24 24 H 1.09000 * 109.46871 * 204.50182 * 1 2 3 25 25 H 1.09001 * 109.46911 * 324.49431 * 1 2 3 26 26 H 1.08003 * 120.00058 * 173.33096 * 3 2 1 27 27 H 1.07998 * 120.07855 * 359.97438 * 5 4 3 28 28 H 1.08001 * 119.92249 * 179.97438 * 6 5 4 29 29 H 1.07999 * 119.92982 * 179.74739 * 9 7 6 30 30 H 1.08003 * 120.07576 * 180.26128 * 10 9 7 31 31 H 1.09003 * 109.47311 * 94.95915 * 14 13 11 32 32 H 1.08999 * 109.47344 * 214.96392 * 14 13 11 33 33 H 1.09007 * 109.47053 * 334.96518 * 14 13 11 34 34 H 0.97000 * 120.00025 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1823 1.1696 0.0000 4 6 1.4544 2.4389 -0.1479 5 6 1.8743 3.5754 0.5521 6 6 1.1881 4.7616 0.4086 7 6 0.0833 4.8304 -0.4269 8 9 -0.5854 5.9964 -0.5627 9 6 -0.3416 3.7063 -1.1193 10 6 0.3390 2.5154 -0.9893 11 6 2.2378 -1.2656 0.0006 12 8 2.3801 -1.8861 1.0386 13 7 2.7541 -1.7461 -1.1479 14 6 2.6767 -0.9501 -2.3754 15 6 3.3502 -2.9765 -1.1675 16 1 3.2397 -3.6436 -0.3254 17 6 4.0991 -3.3690 -2.2722 18 7 4.6433 -2.4633 -3.0521 19 14 4.3307 -5.1844 -2.6462 20 1 3.3072 -5.6219 -3.6293 21 1 5.6860 -5.4044 -3.2118 22 1 4.1829 -5.9705 -1.3949 23 1 -0.3633 0.0986 -1.0229 24 1 -0.3633 -0.9351 0.4262 25 1 -0.3633 0.8366 0.5969 26 1 3.2568 1.1729 0.1086 27 1 2.7343 3.5230 1.2033 28 1 1.5109 5.6394 0.9486 29 1 -1.2051 3.7656 -1.7652 30 1 0.0097 1.6417 -1.5323 31 1 3.6000 -0.3844 -2.5005 32 1 2.5378 -1.6124 -3.2298 33 1 1.8347 -0.2610 -2.3091 34 1 5.1659 -2.7370 -3.8221 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749362465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:54 Heat of formation + Delta-G solvation = -46.132964 kcal Electronic energy + Delta-G solvation = -19065.017331 eV Core-core repulsion = 15877.475828 eV Total energy + Delta-G solvation = -3187.541503 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.85798 -40.78991 -39.82600 -36.74610 -35.83525 -33.60416 -32.22361 -30.98869 -28.47415 -27.97206 -26.65409 -24.11996 -23.78410 -22.06875 -19.66117 -18.93399 -18.51102 -17.84829 -17.12834 -16.84580 -16.57375 -16.42162 -16.05430 -15.70808 -15.16875 -14.82972 -14.64514 -14.17858 -13.99044 -13.80366 -13.51749 -13.32008 -13.19478 -13.01912 -12.75969 -12.65718 -12.52512 -12.34101 -12.14969 -11.88317 -11.05719 -10.68384 -10.28145 -10.03949 -9.84744 -9.02024 -8.44691 -5.94691 -0.22963 0.33546 1.09794 1.34429 1.41564 1.54127 1.92592 2.26699 2.70217 2.98042 3.09520 3.30814 3.75152 3.80996 3.96186 4.08392 4.16977 4.31027 4.42292 4.56041 4.67048 4.76321 4.94465 4.97061 5.00205 5.10001 5.18818 5.20529 5.27317 5.32184 5.43057 5.57362 5.71676 5.93420 6.00688 6.41564 7.10277 7.40279 7.96950 8.58527 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.039488 B = 0.004241 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.908057 B = 6601.188989 C = 6807.389983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.121 4.121 3 C -0.095 4.095 4 C -0.066 4.066 5 C -0.082 4.082 6 C -0.152 4.152 7 C 0.082 3.918 8 F -0.147 7.147 9 C -0.150 4.150 10 C -0.083 4.083 11 C 0.457 3.543 12 O -0.646 6.646 13 N -0.443 5.443 14 C 0.123 3.877 15 C -0.361 4.361 16 H 0.074 0.926 17 C 0.008 3.992 18 N -0.879 5.879 19 Si 0.986 3.014 20 H -0.262 1.262 21 H -0.272 1.272 22 H -0.276 1.276 23 H 0.098 0.902 24 H 0.051 0.949 25 H 0.090 0.910 26 H 0.110 0.890 27 H 0.146 0.854 28 H 0.155 0.845 29 H 0.157 0.843 30 H 0.152 0.848 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.722 13.764 -1.006 16.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.124 4.124 3 C -0.114 4.114 4 C -0.066 4.066 5 C -0.100 4.100 6 C -0.170 4.170 7 C 0.063 3.937 8 F -0.125 7.125 9 C -0.168 4.168 10 C -0.101 4.101 11 C 0.248 3.752 12 O -0.536 6.536 13 N -0.158 5.158 14 C -0.020 4.020 15 C -0.488 4.488 16 H 0.092 0.908 17 C -0.196 4.196 18 N -0.516 5.516 19 Si 0.809 3.191 20 H -0.187 1.187 21 H -0.197 1.197 22 H -0.201 1.201 23 H 0.117 0.883 24 H 0.070 0.930 25 H 0.109 0.891 26 H 0.128 0.872 27 H 0.163 0.837 28 H 0.172 0.828 29 H 0.175 0.825 30 H 0.169 0.831 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.540 13.524 -0.753 16.012 hybrid contribution 0.598 -0.837 -0.059 1.030 sum -7.942 12.687 -0.812 14.990 Atomic orbital electron populations 1.21003 0.88425 1.02965 1.03562 1.21756 0.97831 0.91563 1.01214 1.21801 0.98644 0.90403 1.00558 1.18998 0.96278 0.92682 0.98625 1.21378 0.99780 0.90821 0.97985 1.21235 0.95568 0.99920 1.00318 1.18091 0.93596 0.81925 1.00074 1.91478 1.79616 1.46657 1.94775 1.21270 1.02549 0.91317 1.01675 1.21651 0.93333 0.98290 0.96835 1.18664 0.85620 0.87659 0.83269 1.90619 1.66718 1.63081 1.33153 1.43825 1.47890 1.16249 1.07877 1.21452 0.99924 0.94366 0.86242 1.19631 1.32013 0.92104 1.05096 0.90827 1.26021 0.93868 1.03998 0.95752 1.70132 1.29378 1.35297 1.16828 0.85049 0.78138 0.77396 0.78537 1.18737 1.19744 1.20061 0.88335 0.93020 0.89138 0.87185 0.83650 0.82761 0.82498 0.83054 0.93608 0.92658 0.91198 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.95 8.24 71.24 0.59 -2.36 16 2 C -0.12 -4.50 3.83 -18.54 -0.07 -4.57 16 3 C -0.09 -3.08 9.09 23.85 0.22 -2.86 16 4 C -0.07 -1.64 5.19 -20.15 -0.10 -1.75 16 5 C -0.08 -1.76 9.79 22.57 0.22 -1.54 16 6 C -0.15 -2.91 10.01 22.27 0.22 -2.69 16 7 C 0.08 1.67 7.31 22.49 0.16 1.84 16 8 F -0.15 -3.11 17.26 44.97 0.78 -2.33 16 9 C -0.15 -2.82 10.01 22.27 0.22 -2.59 16 10 C -0.08 -1.77 7.84 22.57 0.18 -1.59 16 11 C 0.46 23.31 6.94 86.30 0.60 23.91 16 12 O -0.65 -38.93 16.74 -4.55 -0.08 -39.01 16 13 N -0.44 -23.24 3.02 -664.05 -2.00 -25.25 16 14 C 0.12 5.43 8.48 127.77 1.08 6.52 16 15 C -0.36 -20.81 9.36 84.14 0.79 -20.03 16 16 H 0.07 4.60 7.37 -2.91 -0.02 4.58 16 17 C 0.01 0.41 4.88 84.98 0.41 0.82 16 18 N -0.88 -45.92 10.82 21.69 0.23 -45.68 16 19 Si 0.99 41.73 29.62 68.60 2.03 43.76 16 20 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 22 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 23 H 0.10 2.24 6.37 -2.39 -0.02 2.22 16 24 H 0.05 1.64 8.07 -2.39 -0.02 1.62 16 25 H 0.09 2.20 6.75 -2.39 -0.02 2.18 16 26 H 0.11 3.85 8.06 -2.91 -0.02 3.83 16 27 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 28 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 29 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 30 H 0.15 2.88 5.36 -2.91 -0.02 2.87 16 31 H 0.05 2.12 7.62 -2.39 -0.02 2.10 16 32 H 0.05 2.53 6.90 -2.39 -0.02 2.52 16 33 H 0.07 2.49 6.52 -2.38 -0.02 2.47 16 34 H 0.28 13.41 8.31 -92.71 -0.77 12.64 16 Total: -1.00 -69.19 295.25 6.60 -62.59 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 1.12 Total: 12.80 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 4.52 Total: -6.88 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -1.77 Total: -70.93 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -0.08 Total: -39.01 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.78 Total: -2.33 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -69.19 6.60 -62.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749362465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.457 kcal (2) G-P(sol) polarization free energy of solvation -69.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds