Wall clock time and date at job start Mon Mar 30 2020 07:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38632 * 119.54680 * 2 1 4 4 C 1.38587 * 119.35656 * 179.97438 * 3 2 1 5 5 C 1.38630 * 118.48820 * 0.25170 * 4 3 2 6 6 C 1.39304 * 119.05973 * 359.48120 * 5 4 3 7 7 C 1.48068 * 119.72770 * 180.27421 * 6 5 4 8 8 O 1.21435 * 120.00004 * 0.25283 * 7 6 5 9 9 O 1.34680 * 120.00057 * 180.25199 * 7 6 5 10 10 C 1.45200 * 116.99654 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47045 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47216 * 300.00823 * 11 10 9 13 13 C 1.53000 * 109.46878 * 60.00325 * 11 10 9 14 14 C 1.50693 * 109.47542 * 180.02562 * 11 10 9 15 15 H 1.08000 * 119.99791 * 0.02562 * 14 11 10 16 16 C 1.37879 * 120.00516 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99367 * 0.02562 * 16 14 11 18 18 Si 1.86792 * 120.00193 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47236 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47105 * 120.00610 * 18 16 14 21 21 H 1.48502 * 109.47065 * 240.00281 * 18 16 14 22 22 N 1.31479 * 119.55037 * 179.97438 * 2 1 3 23 23 H 1.08996 * 109.46987 * 90.00305 * 1 2 3 24 24 H 1.08997 * 109.46864 * 210.00609 * 1 2 3 25 25 H 1.08994 * 109.47018 * 330.00053 * 1 2 3 26 26 H 1.07996 * 120.32139 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.75096 * 179.97438 * 4 3 2 28 28 H 1.08001 * 120.46741 * 179.75133 * 5 4 3 29 29 H 1.08996 * 109.47518 * 300.00091 * 10 9 7 30 30 H 1.09005 * 109.47285 * 60.00823 * 10 9 7 31 31 H 1.08998 * 109.47479 * 59.99505 * 12 11 10 32 32 H 1.08999 * 109.47162 * 179.97438 * 12 11 10 33 33 H 1.09000 * 109.46540 * 299.99580 * 12 11 10 34 34 H 1.09006 * 109.47305 * 59.99657 * 13 11 10 35 35 H 1.08999 * 109.47233 * 180.02562 * 13 11 10 36 36 H 1.08998 * 109.47523 * 300.00315 * 13 11 10 37 37 H 0.97004 * 119.99315 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2060 0.0000 4 6 3.5765 1.2014 0.0005 5 6 4.2337 -0.0192 -0.0043 6 6 3.4823 -1.1922 0.0015 7 6 4.1690 -2.5040 0.0027 8 8 5.3823 -2.5542 0.0031 9 8 3.4480 -3.6416 0.0031 10 6 4.1879 -4.8909 0.0037 11 6 3.2066 -6.0648 0.0048 12 6 2.3265 -5.9926 1.2543 13 6 2.3257 -5.9943 -1.2442 14 6 3.9744 -7.3615 0.0060 15 1 5.0543 -7.3495 0.0063 16 6 3.2983 -8.5631 0.0077 17 7 1.9832 -8.5776 0.0078 18 14 4.2501 -10.1703 0.0099 19 1 5.7070 -9.8829 0.0100 20 1 3.8999 -10.9513 1.2234 21 1 3.8999 -10.9546 -1.2016 22 7 2.1554 -1.1438 0.0005 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8899 0.5138 26 1 1.6485 2.1401 -0.0004 27 1 4.1318 2.1278 0.0001 28 1 5.3129 -0.0601 -0.0081 29 1 4.8152 -4.9421 -0.8862 30 1 4.8151 -4.9414 0.8938 31 1 1.7711 -5.0547 1.2539 32 1 1.6271 -6.8286 1.2549 33 1 2.9541 -6.0428 2.1441 34 1 2.9527 -6.0456 -2.1344 35 1 1.6263 -6.8303 -1.2432 36 1 1.7703 -5.0564 -1.2447 37 1 1.5075 -9.4230 0.0086 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764833770.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:03 Heat of formation + Delta-G solvation = -59.660960 kcal Electronic energy + Delta-G solvation = -19555.733402 eV Core-core repulsion = 16491.065586 eV Total energy + Delta-G solvation = -3064.667816 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.69025 -39.36844 -36.56110 -34.80510 -33.17990 -32.67995 -31.17774 -27.98538 -26.19430 -25.53381 -25.21593 -24.31053 -22.40195 -20.85406 -18.80522 -17.95155 -16.73348 -16.09387 -15.88203 -15.87356 -15.60227 -14.74134 -14.53026 -14.20952 -13.30602 -13.12072 -13.07949 -12.83014 -12.44370 -12.36443 -12.14232 -11.71849 -11.41303 -11.15730 -10.94151 -10.63886 -10.45941 -10.34459 -10.11777 -10.11309 -9.83641 -9.62591 -9.35921 -9.24395 -9.15864 -8.68544 -8.33175 -5.97342 -4.08880 0.47338 1.04949 2.63300 3.03419 3.29632 3.37824 3.42475 3.73782 4.05513 4.41833 4.47631 4.75157 4.83760 4.89027 5.28890 5.30144 5.37007 5.40078 5.47754 5.82047 5.87412 5.95760 6.10616 6.14300 6.40027 6.52368 6.79039 7.03428 7.05872 7.24394 7.26129 7.46049 7.68638 7.69677 7.74922 8.11728 8.19152 8.27697 8.44630 8.91192 9.56280 11.03814 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.035552 B = 0.004404 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.393134 B = 6356.988496 C = 6948.024528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.123 3.877 3 C -0.149 4.149 4 C -0.082 4.082 5 C -0.119 4.119 6 C 0.107 3.893 7 C 0.511 3.489 8 O -0.510 6.510 9 O -0.320 6.320 10 C 0.080 3.920 11 C 0.071 3.929 12 C -0.129 4.129 13 C -0.129 4.129 14 C -0.511 4.511 15 H 0.057 0.943 16 C 0.068 3.932 17 N -0.881 5.881 18 Si 0.895 3.105 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.430 5.430 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.140 0.860 27 H 0.144 0.856 28 H 0.149 0.851 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.019 0.981 32 H 0.083 0.917 33 H 0.021 0.979 34 H 0.021 0.979 35 H 0.083 0.917 36 H 0.019 0.981 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.814 19.063 -0.028 19.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.017 4.017 3 C -0.169 4.169 4 C -0.108 4.108 5 C -0.139 4.139 6 C -0.030 4.030 7 C 0.354 3.646 8 O -0.400 6.400 9 O -0.234 6.234 10 C 0.008 3.992 11 C 0.070 3.930 12 C -0.187 4.187 13 C -0.187 4.187 14 C -0.549 4.549 15 H 0.075 0.925 16 C -0.134 4.134 17 N -0.519 5.519 18 Si 0.723 3.277 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 N -0.142 5.142 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.158 0.842 27 H 0.161 0.839 28 H 0.167 0.833 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.102 0.898 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.102 0.898 36 H 0.038 0.962 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.053 18.028 -0.026 18.144 hybrid contribution 1.235 -0.135 -0.012 1.242 sum -0.818 17.892 -0.038 17.911 Atomic orbital electron populations 1.20751 0.88140 1.03863 1.03468 1.21469 0.97519 0.87745 0.95008 1.22253 0.95036 0.99497 1.00147 1.21571 0.94421 0.98060 0.96709 1.22110 1.02291 0.91611 0.97917 1.20289 0.89788 0.91673 1.01204 1.20788 0.85221 0.85219 0.73395 1.90804 1.14508 1.88155 1.46529 1.86709 1.40873 1.14682 1.81149 1.23788 0.95699 0.79097 1.00653 1.18246 0.91872 0.88929 0.93928 1.21762 1.00105 1.00171 0.96655 1.21761 1.00102 1.00173 0.96653 1.20981 0.92805 0.89646 1.51468 0.92470 1.24858 0.94897 0.98871 0.94747 1.69857 1.06112 1.25813 1.50159 0.86490 0.80185 0.83474 0.77570 1.19793 1.20992 1.20986 1.67595 1.08359 1.29572 1.08681 0.90092 0.89797 0.90610 0.84192 0.83866 0.83280 0.92387 0.92391 0.96171 0.89785 0.95957 0.95959 0.89793 0.96167 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.17 36.00 0.37 -0.56 16 2 C 0.12 1.47 6.78 -82.60 -0.56 0.91 16 3 C -0.15 -1.35 9.75 -39.31 -0.38 -1.73 16 4 C -0.08 -0.75 10.17 -39.31 -0.40 -1.15 16 5 C -0.12 -1.49 9.63 -39.04 -0.38 -1.87 16 6 C 0.11 1.75 6.75 -83.03 -0.56 1.19 16 7 C 0.51 10.08 7.95 34.76 0.28 10.35 16 8 O -0.51 -10.60 16.11 -19.22 -0.31 -10.91 16 9 O -0.32 -7.04 8.70 -40.44 -0.35 -7.39 16 10 C 0.08 1.87 4.27 37.16 0.16 2.03 16 11 C 0.07 1.80 0.58 -155.66 -0.09 1.71 16 12 C -0.13 -3.25 8.11 37.16 0.30 -2.95 16 13 C -0.13 -3.25 8.11 37.16 0.30 -2.95 16 14 C -0.51 -13.96 8.01 -34.44 -0.28 -14.24 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.07 1.84 5.15 -17.82 -0.09 1.75 16 17 N -0.88 -24.39 9.35 55.43 0.52 -23.87 16 18 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 N -0.43 -6.92 10.03 -6.07 -0.06 -6.98 16 23 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 26 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 27 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 28 H 0.15 1.71 7.64 -52.49 -0.40 1.31 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.02 0.47 7.68 -51.93 -0.40 0.07 16 32 H 0.08 2.26 6.07 -51.93 -0.32 1.95 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 2.26 6.07 -51.93 -0.32 1.95 16 36 H 0.02 0.47 7.68 -51.93 -0.40 0.07 16 37 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 314.69 15.07 4.74 4.74 Total: -1.00 -30.89 314.69 -6.99 -37.88 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -5.17 Total: -2.07 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -1.33 Total: -7.50 kcal Atomic # 7 Polarization: -31.31 SS G_CDS: 0.46 Total: -30.85 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.66 Total: -18.30 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.89 -6.99 -37.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764833770.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.786 kcal (2) G-P(sol) polarization free energy of solvation -30.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds