Wall clock time and date at job start Mon Mar 30 2020 07:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38632 * 119.54680 * 2 1 4 4 C 1.38587 * 119.35656 * 179.97438 * 3 2 1 5 5 C 1.38630 * 118.48820 * 0.25170 * 4 3 2 6 6 C 1.39304 * 119.05973 * 359.48120 * 5 4 3 7 7 C 1.48068 * 119.72770 * 180.27421 * 6 5 4 8 8 O 1.21435 * 120.00004 * 0.25283 * 7 6 5 9 9 O 1.34680 * 120.00057 * 180.25199 * 7 6 5 10 10 C 1.45200 * 116.99654 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47045 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47216 * 300.00823 * 11 10 9 13 13 C 1.53000 * 109.46878 * 60.00325 * 11 10 9 14 14 C 1.50693 * 109.47542 * 180.02562 * 11 10 9 15 15 H 1.08000 * 119.99791 * 0.02562 * 14 11 10 16 16 C 1.37879 * 120.00516 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99367 * 0.02562 * 16 14 11 18 18 Si 1.86792 * 120.00193 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47236 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47105 * 120.00610 * 18 16 14 21 21 H 1.48502 * 109.47065 * 240.00281 * 18 16 14 22 22 N 1.31479 * 119.55037 * 179.97438 * 2 1 3 23 23 H 1.08996 * 109.46987 * 90.00305 * 1 2 3 24 24 H 1.08997 * 109.46864 * 210.00609 * 1 2 3 25 25 H 1.08994 * 109.47018 * 330.00053 * 1 2 3 26 26 H 1.07996 * 120.32139 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.75096 * 179.97438 * 4 3 2 28 28 H 1.08001 * 120.46741 * 179.75133 * 5 4 3 29 29 H 1.08996 * 109.47518 * 300.00091 * 10 9 7 30 30 H 1.09005 * 109.47285 * 60.00823 * 10 9 7 31 31 H 1.08998 * 109.47479 * 59.99505 * 12 11 10 32 32 H 1.08999 * 109.47162 * 179.97438 * 12 11 10 33 33 H 1.09000 * 109.46540 * 299.99580 * 12 11 10 34 34 H 1.09006 * 109.47305 * 59.99657 * 13 11 10 35 35 H 1.08999 * 109.47233 * 180.02562 * 13 11 10 36 36 H 1.08998 * 109.47523 * 300.00315 * 13 11 10 37 37 H 0.97004 * 119.99315 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2060 0.0000 4 6 3.5765 1.2014 0.0005 5 6 4.2337 -0.0192 -0.0043 6 6 3.4823 -1.1922 0.0015 7 6 4.1690 -2.5040 0.0027 8 8 5.3823 -2.5542 0.0031 9 8 3.4480 -3.6416 0.0031 10 6 4.1879 -4.8909 0.0037 11 6 3.2066 -6.0648 0.0048 12 6 2.3265 -5.9926 1.2543 13 6 2.3257 -5.9943 -1.2442 14 6 3.9744 -7.3615 0.0060 15 1 5.0543 -7.3495 0.0063 16 6 3.2983 -8.5631 0.0077 17 7 1.9832 -8.5776 0.0078 18 14 4.2501 -10.1703 0.0099 19 1 5.7070 -9.8829 0.0100 20 1 3.8999 -10.9513 1.2234 21 1 3.8999 -10.9546 -1.2016 22 7 2.1554 -1.1438 0.0005 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8899 0.5138 26 1 1.6485 2.1401 -0.0004 27 1 4.1318 2.1278 0.0001 28 1 5.3129 -0.0601 -0.0081 29 1 4.8152 -4.9421 -0.8862 30 1 4.8151 -4.9414 0.8938 31 1 1.7711 -5.0547 1.2539 32 1 1.6271 -6.8286 1.2549 33 1 2.9541 -6.0428 2.1441 34 1 2.9527 -6.0456 -2.1344 35 1 1.6263 -6.8303 -1.2432 36 1 1.7703 -5.0564 -1.2447 37 1 1.5075 -9.4230 0.0086 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764833770.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:02 Heat of formation + Delta-G solvation = -77.213872 kcal Electronic energy + Delta-G solvation = -19556.494553 eV Core-core repulsion = 16491.065586 eV Total energy + Delta-G solvation = -3065.428967 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.88164 -40.71274 -38.34159 -36.66939 -34.04906 -33.67756 -33.17089 -28.88381 -27.82216 -27.60906 -27.23707 -25.67545 -23.30154 -22.18289 -20.77125 -19.34386 -17.94019 -17.83821 -17.47570 -17.14134 -16.88232 -16.59776 -15.56646 -15.29249 -14.91759 -14.69958 -14.61806 -14.03413 -13.72029 -13.44283 -13.22918 -13.21923 -13.04245 -12.87291 -12.85160 -12.60756 -12.36400 -12.15272 -11.96507 -11.77009 -11.32060 -11.28433 -10.97685 -10.75749 -10.55430 -10.42209 -10.07763 -8.05142 -6.23974 -0.54887 0.21504 1.32855 1.42477 1.44191 1.54184 1.63518 2.44476 2.72350 3.04214 3.18005 3.68137 3.85117 3.91972 4.04036 4.20628 4.21912 4.39620 4.55240 4.57134 4.76780 4.79361 4.83730 5.01076 5.04968 5.09547 5.18194 5.20714 5.21942 5.29455 5.46939 5.60166 5.62187 5.63225 6.02484 6.14485 6.34012 6.50594 6.80253 6.91067 7.44001 8.95168 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.035552 B = 0.004404 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.393134 B = 6356.988496 C = 6948.024528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.106 3.894 3 C -0.124 4.124 4 C -0.070 4.070 5 C -0.117 4.117 6 C 0.066 3.934 7 C 0.506 3.494 8 O -0.532 6.532 9 O -0.334 6.334 10 C 0.092 3.908 11 C 0.062 3.938 12 C -0.116 4.116 13 C -0.116 4.116 14 C -0.534 4.534 15 H 0.051 0.949 16 C 0.027 3.973 17 N -0.900 5.900 18 Si 0.957 3.043 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.279 1.279 22 N -0.475 5.475 23 H 0.089 0.911 24 H 0.062 0.938 25 H 0.112 0.888 26 H 0.190 0.810 27 H 0.191 0.809 28 H 0.153 0.847 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.025 0.975 32 H 0.065 0.935 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.044 21.761 -0.035 21.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.036 4.036 3 C -0.143 4.143 4 C -0.095 4.095 5 C -0.137 4.137 6 C -0.068 4.068 7 C 0.351 3.649 8 O -0.422 6.422 9 O -0.248 6.248 10 C 0.018 3.982 11 C 0.061 3.939 12 C -0.174 4.174 13 C -0.173 4.173 14 C -0.571 4.571 15 H 0.070 0.930 16 C -0.173 4.173 17 N -0.539 5.539 18 Si 0.783 3.217 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.205 1.205 22 N -0.188 5.188 23 H 0.108 0.892 24 H 0.081 0.919 25 H 0.130 0.870 26 H 0.207 0.793 27 H 0.208 0.792 28 H 0.171 0.829 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.279 20.735 -0.033 20.860 hybrid contribution 1.228 -0.795 -0.011 1.463 sum -1.051 19.940 -0.044 19.968 Atomic orbital electron populations 1.20860 0.86338 1.04617 1.04244 1.22101 0.98866 0.87833 0.94762 1.22796 0.95154 1.00096 0.96257 1.22115 0.94816 0.98140 0.94466 1.22303 1.02510 0.91717 0.97185 1.19999 0.90575 0.90513 1.05742 1.21580 0.85344 0.85752 0.72244 1.90763 1.15295 1.88473 1.47708 1.86697 1.41234 1.14982 1.81912 1.23396 0.94933 0.79727 1.00115 1.18273 0.92233 0.89458 0.93906 1.21594 0.99588 0.99551 0.96621 1.21593 0.99584 0.99552 0.96618 1.21209 0.92751 0.90871 1.52316 0.93048 1.25556 0.95764 1.01738 0.94241 1.69966 1.07163 1.26649 1.50073 0.85528 0.78895 0.79623 0.77693 1.19624 1.20465 1.20452 1.67435 1.08508 1.32395 1.10497 0.89231 0.91921 0.86971 0.79323 0.79224 0.82912 0.92906 0.92919 0.95586 0.91628 0.96092 0.96087 0.91636 0.95582 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 10.17 71.24 0.72 -0.87 16 2 C 0.11 2.29 6.78 42.70 0.29 2.58 16 3 C -0.12 -1.65 9.75 22.45 0.22 -1.43 16 4 C -0.07 -0.98 10.17 22.45 0.23 -0.76 16 5 C -0.12 -2.74 9.63 22.62 0.22 -2.52 16 6 C 0.07 2.19 6.75 41.87 0.28 2.47 16 7 C 0.51 20.74 7.95 70.43 0.56 21.30 16 8 O -0.53 -22.88 16.11 20.05 0.32 -22.56 16 9 O -0.33 -15.27 8.70 -55.90 -0.49 -15.76 16 10 C 0.09 4.43 4.27 71.98 0.31 4.73 16 11 C 0.06 3.23 0.58 -52.93 -0.03 3.20 16 12 C -0.12 -5.99 8.11 71.98 0.58 -5.40 16 13 C -0.12 -5.98 8.11 71.98 0.58 -5.40 16 14 C -0.53 -29.73 8.01 25.60 0.21 -29.53 16 15 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 16 C 0.03 1.48 5.15 84.65 0.44 1.91 16 17 N -0.90 -50.46 9.35 21.45 0.20 -50.26 16 18 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 N -0.48 -15.30 10.03 -173.12 -1.74 -17.04 16 23 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.11 0.87 8.08 -2.39 -0.02 0.85 16 26 H 0.19 0.71 8.06 -2.91 -0.02 0.69 16 27 H 0.19 0.92 8.06 -2.91 -0.02 0.90 16 28 H 0.15 3.35 7.64 -2.91 -0.02 3.33 16 29 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.05 2.54 8.14 -2.38 -0.02 2.52 16 31 H 0.03 1.26 7.68 -2.39 -0.02 1.24 16 32 H 0.06 3.62 6.07 -2.39 -0.01 3.61 16 33 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.06 3.62 6.07 -2.39 -0.01 3.60 16 36 H 0.03 1.26 7.68 -2.39 -0.02 1.24 16 37 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -69.71 314.69 5.99 -63.72 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: 1.06 Total: 6.02 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 4.61 Total: -9.71 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: -1.54 Total: -67.29 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -0.16 Total: -38.32 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -69.71 5.99 -63.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764833770.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.496 kcal (2) G-P(sol) polarization free energy of solvation -69.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds