Wall clock time and date at job start Mon Mar 30 2020 07:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38366 * 120.34389 * 2 1 4 4 N 1.31928 * 121.09375 * 180.02562 * 3 2 1 5 5 C 1.31692 * 121.88249 * 359.72765 * 4 3 2 6 6 C 1.39579 * 120.55533 * 0.53614 * 5 4 3 7 7 C 1.47724 * 120.55919 * 179.74839 * 6 5 4 8 8 O 1.21471 * 119.99473 * 179.71967 * 7 6 5 9 9 O 1.34712 * 120.00146 * 359.73052 * 7 6 5 10 10 C 1.45199 * 116.99759 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47075 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47127 * 300.00189 * 11 10 9 13 13 C 1.52999 * 109.47317 * 59.99699 * 11 10 9 14 14 C 1.50697 * 109.47466 * 179.97438 * 11 10 9 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46756 * 59.99920 * 18 16 14 20 20 H 1.48490 * 109.47381 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47117 * 300.00527 * 18 16 14 22 22 C 1.38341 * 120.35005 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47016 * 269.97441 * 1 2 3 24 24 H 1.08997 * 109.47449 * 29.97191 * 1 2 3 25 25 H 1.09004 * 109.47089 * 149.97728 * 1 2 3 26 26 H 1.08001 * 119.45099 * 0.02562 * 3 2 1 27 27 H 1.07998 * 119.72526 * 180.29195 * 5 4 3 28 28 H 1.09002 * 109.47177 * 299.99657 * 10 9 7 29 29 H 1.09001 * 109.47399 * 59.99828 * 10 9 7 30 30 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 31 31 H 1.09000 * 109.47050 * 179.97438 * 12 11 10 32 32 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 33 33 H 1.09002 * 109.46716 * 60.00091 * 13 11 10 34 34 H 1.09000 * 109.47486 * 180.02562 * 13 11 10 35 35 H 1.09001 * 109.47362 * 300.00732 * 13 11 10 36 36 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 37 37 H 1.08007 * 120.85581 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1941 0.0000 4 7 3.5252 1.2114 -0.0005 5 6 4.2353 0.1023 0.0043 6 6 3.6058 -1.1434 -0.0011 7 6 4.4023 -2.3875 -0.0013 8 8 3.8438 -3.4662 -0.0009 9 8 5.7480 -2.3257 -0.0018 10 6 6.4658 -3.5879 -0.0014 11 6 7.9718 -3.3181 -0.0026 12 6 8.3458 -2.5190 -1.2527 13 6 8.3475 -2.5173 1.2457 14 6 8.7168 -4.6280 -0.0016 15 1 8.1708 -5.5598 -0.0006 16 6 10.0956 -4.6370 -0.0029 17 7 10.7605 -3.5023 -0.0046 18 14 11.0191 -6.2608 -0.0009 19 1 10.6540 -7.0393 -1.2117 20 1 12.4807 -5.9989 -0.0035 21 1 10.6565 -7.0350 1.2132 22 6 2.2060 -1.1938 -0.0005 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6627 2.1275 0.0004 27 1 5.3139 0.1571 0.0085 28 1 6.1991 -4.1573 0.8890 29 1 6.1985 -4.1582 -0.8910 30 1 7.8070 -1.5716 -1.2529 31 1 9.4186 -2.3265 -1.2533 32 1 8.0782 -3.0895 -2.1421 33 1 8.0811 -3.0865 2.1363 34 1 9.4204 -2.3247 1.2447 35 1 7.8086 -1.5698 1.2455 36 1 11.7305 -3.5086 -0.0060 37 1 1.6858 -2.1403 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764833908.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:17 Heat of formation + Delta-G solvation = -65.808814 kcal Electronic energy + Delta-G solvation = -19451.797695 eV Core-core repulsion = 16386.863288 eV Total energy + Delta-G solvation = -3064.934407 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.70277 -39.43910 -36.62233 -34.89979 -33.86491 -32.37053 -31.22626 -27.58677 -26.22431 -25.63014 -25.26624 -24.20790 -22.85708 -20.65715 -18.88512 -17.74348 -17.13733 -16.50743 -15.88624 -15.83073 -15.64976 -14.74785 -14.47709 -13.91993 -13.31843 -13.20675 -13.15564 -12.92526 -12.81631 -12.76609 -12.13989 -11.87747 -11.51650 -11.22107 -10.96883 -10.75286 -10.48040 -10.42806 -10.17478 -10.00920 -9.92584 -9.61990 -9.43990 -9.34326 -9.15807 -8.78345 -8.38358 -6.02940 -4.14848 0.45841 1.00729 2.70759 3.03517 3.29006 3.33638 3.37232 3.68331 4.24167 4.37751 4.47478 4.65618 4.72576 4.77815 5.08813 5.23442 5.26800 5.40409 5.42139 5.67452 5.90440 5.95993 6.04590 6.06884 6.39687 6.44225 6.70831 6.96766 6.97270 7.12533 7.12693 7.38170 7.60987 7.68758 7.69941 8.04070 8.07907 8.18441 8.37456 8.84718 9.50739 10.98229 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.045795 B = 0.004023 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.278088 B = 6958.527675 C = 7373.450174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.154 4.154 3 C 0.123 3.877 4 N -0.488 5.488 5 C 0.154 3.846 6 C -0.165 4.165 7 C 0.504 3.496 8 O -0.514 6.514 9 O -0.341 6.341 10 C 0.085 3.915 11 C 0.070 3.930 12 C -0.130 4.130 13 C -0.130 4.130 14 C -0.514 4.514 15 H 0.056 0.944 16 C 0.069 3.931 17 N -0.882 5.882 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.277 1.277 22 C -0.018 4.018 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.160 0.840 27 H 0.176 0.824 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.017 0.983 31 H 0.085 0.915 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.085 0.915 35 H 0.017 0.983 36 H 0.262 0.738 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.171 8.215 0.036 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.156 4.156 3 C -0.033 4.033 4 N -0.195 5.195 5 C -0.004 4.004 6 C -0.168 4.168 7 C 0.348 3.652 8 O -0.404 6.404 9 O -0.257 6.257 10 C 0.013 3.987 11 C 0.070 3.930 12 C -0.187 4.187 13 C -0.187 4.187 14 C -0.552 4.552 15 H 0.075 0.925 16 C -0.133 4.133 17 N -0.520 5.520 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.044 4.044 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.177 0.823 27 H 0.193 0.807 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.036 0.964 31 H 0.103 0.897 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.103 0.897 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.634 8.750 0.031 17.916 hybrid contribution 0.069 -1.952 0.004 1.953 sum -15.565 6.798 0.036 16.985 Atomic orbital electron populations 1.20713 0.89577 1.03371 1.02828 1.20885 0.97970 0.93618 1.03148 1.22977 0.90166 0.97609 0.92590 1.67825 1.07820 1.31060 1.12832 1.23361 1.01366 0.86113 0.89522 1.20355 0.93961 0.93600 1.08875 1.20858 0.82691 0.88334 0.73355 1.90795 1.72823 1.30524 1.46306 1.86563 1.17274 1.39588 1.82253 1.23757 0.93826 0.80369 1.00791 1.18256 0.85032 0.95855 0.93857 1.21777 1.03759 0.96425 0.96789 1.21777 1.03755 0.96418 0.96793 1.20890 0.91217 0.91171 1.51923 0.92535 1.24852 0.97374 0.96434 0.94628 1.69820 1.07410 1.24883 1.49854 0.86593 0.78588 0.83763 0.78683 1.20242 1.21197 1.20235 1.21639 0.92156 0.99207 0.91407 0.90720 0.90944 0.91071 0.82310 0.80717 0.92322 0.92326 0.96421 0.89679 0.95808 0.95808 0.89681 0.96428 0.92809 0.83515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.03 36.01 0.36 -0.30 16 2 C -0.15 -1.50 5.89 -104.54 -0.62 -2.11 16 3 C 0.12 1.26 10.85 -17.46 -0.19 1.07 16 4 N -0.49 -6.36 10.35 -12.89 -0.13 -6.50 16 5 C 0.15 2.15 10.79 -17.11 -0.18 1.96 16 6 C -0.16 -2.42 5.89 -104.84 -0.62 -3.03 16 7 C 0.50 9.11 7.91 34.61 0.27 9.38 16 8 O -0.51 -10.30 16.21 -19.24 -0.31 -10.61 16 9 O -0.34 -6.74 8.16 -40.52 -0.33 -7.07 16 10 C 0.09 1.87 4.27 37.16 0.16 2.03 16 11 C 0.07 1.71 0.58 -155.66 -0.09 1.62 16 12 C -0.13 -3.09 8.11 37.16 0.30 -2.79 16 13 C -0.13 -3.09 8.11 37.16 0.30 -2.79 16 14 C -0.51 -13.65 8.01 -34.44 -0.28 -13.93 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 17 N -0.88 -23.83 9.35 55.43 0.52 -23.31 16 18 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 C -0.02 -0.22 9.39 -38.86 -0.37 -0.59 16 23 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 25 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 26 H 0.16 1.09 8.06 -52.49 -0.42 0.66 16 27 H 0.18 2.41 7.62 -52.49 -0.40 2.00 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 31 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 35 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 36 H 0.26 6.80 8.31 -40.82 -0.34 6.47 16 37 H 0.15 1.67 7.74 -52.48 -0.41 1.26 16 LS Contribution 313.76 15.07 4.73 4.73 Total: -1.00 -29.13 313.76 -6.74 -35.87 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -5.15 Total: -1.08 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.03 Total: -7.75 kcal Atomic # 7 Polarization: -30.19 SS G_CDS: 0.39 Total: -29.81 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.64 Total: -17.68 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.13 -6.74 -35.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764833908.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.940 kcal (2) G-P(sol) polarization free energy of solvation -29.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds