Wall clock time and date at job start Mon Mar 30 2020 07:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38366 * 120.34389 * 2 1 4 4 N 1.31928 * 121.09375 * 180.02562 * 3 2 1 5 5 C 1.31692 * 121.88249 * 359.72765 * 4 3 2 6 6 C 1.39579 * 120.55533 * 0.53614 * 5 4 3 7 7 C 1.47724 * 120.55919 * 179.74839 * 6 5 4 8 8 O 1.21471 * 119.99473 * 179.71967 * 7 6 5 9 9 O 1.34712 * 120.00146 * 359.73052 * 7 6 5 10 10 C 1.45199 * 116.99759 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47075 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47127 * 300.00189 * 11 10 9 13 13 C 1.52999 * 109.47317 * 59.99699 * 11 10 9 14 14 C 1.50697 * 109.47466 * 179.97438 * 11 10 9 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46756 * 59.99920 * 18 16 14 20 20 H 1.48490 * 109.47381 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47117 * 300.00527 * 18 16 14 22 22 C 1.38341 * 120.35005 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47016 * 269.97441 * 1 2 3 24 24 H 1.08997 * 109.47449 * 29.97191 * 1 2 3 25 25 H 1.09004 * 109.47089 * 149.97728 * 1 2 3 26 26 H 1.08001 * 119.45099 * 0.02562 * 3 2 1 27 27 H 1.07998 * 119.72526 * 180.29195 * 5 4 3 28 28 H 1.09002 * 109.47177 * 299.99657 * 10 9 7 29 29 H 1.09001 * 109.47399 * 59.99828 * 10 9 7 30 30 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 31 31 H 1.09000 * 109.47050 * 179.97438 * 12 11 10 32 32 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 33 33 H 1.09002 * 109.46716 * 60.00091 * 13 11 10 34 34 H 1.09000 * 109.47486 * 180.02562 * 13 11 10 35 35 H 1.09001 * 109.47362 * 300.00732 * 13 11 10 36 36 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 37 37 H 1.08007 * 120.85581 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1941 0.0000 4 7 3.5252 1.2114 -0.0005 5 6 4.2353 0.1023 0.0043 6 6 3.6058 -1.1434 -0.0011 7 6 4.4023 -2.3875 -0.0013 8 8 3.8438 -3.4662 -0.0009 9 8 5.7480 -2.3257 -0.0018 10 6 6.4658 -3.5879 -0.0014 11 6 7.9718 -3.3181 -0.0026 12 6 8.3458 -2.5190 -1.2527 13 6 8.3475 -2.5173 1.2457 14 6 8.7168 -4.6280 -0.0016 15 1 8.1708 -5.5598 -0.0006 16 6 10.0956 -4.6370 -0.0029 17 7 10.7605 -3.5023 -0.0046 18 14 11.0191 -6.2608 -0.0009 19 1 10.6540 -7.0393 -1.2117 20 1 12.4807 -5.9989 -0.0035 21 1 10.6565 -7.0350 1.2132 22 6 2.2060 -1.1938 -0.0005 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6627 2.1275 0.0004 27 1 5.3139 0.1571 0.0085 28 1 6.1991 -4.1573 0.8890 29 1 6.1985 -4.1582 -0.8910 30 1 7.8070 -1.5716 -1.2529 31 1 9.4186 -2.3265 -1.2533 32 1 8.0782 -3.0895 -2.1421 33 1 8.0811 -3.0865 2.1363 34 1 9.4204 -2.3247 1.2447 35 1 7.8086 -1.5698 1.2455 36 1 11.7305 -3.5086 -0.0060 37 1 1.6858 -2.1403 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764833908.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:17 Heat of formation + Delta-G solvation = -80.996219 kcal Electronic energy + Delta-G solvation = -19452.456270 eV Core-core repulsion = 16386.863288 eV Total energy + Delta-G solvation = -3065.592982 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.88075 -40.72564 -38.32038 -36.66483 -34.68260 -33.55167 -33.07563 -28.33733 -27.79176 -27.57844 -27.22420 -25.54157 -23.80621 -21.96974 -20.75007 -19.05161 -18.20703 -17.89009 -17.45843 -17.43096 -17.01106 -16.62533 -15.39547 -15.11084 -14.81795 -14.67857 -14.46159 -14.23625 -13.70340 -13.61233 -13.45075 -13.33944 -13.14184 -12.83562 -12.83362 -12.65882 -12.33600 -12.14624 -11.91494 -11.75889 -11.31365 -11.24089 -10.98734 -10.75871 -10.59105 -10.40452 -10.02682 -8.04836 -6.23285 -0.57778 0.09231 1.41609 1.44553 1.44977 1.51639 1.64135 2.44964 2.68583 3.18628 3.30295 3.60073 3.74663 3.79079 3.86050 4.13103 4.23632 4.24649 4.50610 4.60568 4.72399 4.82571 4.86020 4.95882 5.03923 5.15765 5.17999 5.21311 5.22223 5.33149 5.49983 5.56140 5.63161 5.63882 6.06972 6.16771 6.35989 6.59881 6.78293 6.81732 7.44765 8.94647 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.045795 B = 0.004023 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.278088 B = 6958.527675 C = 7373.450174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.140 4.140 3 C 0.130 3.870 4 N -0.505 5.505 5 C 0.146 3.854 6 C -0.185 4.185 7 C 0.505 3.495 8 O -0.539 6.539 9 O -0.344 6.344 10 C 0.097 3.903 11 C 0.061 3.939 12 C -0.119 4.119 13 C -0.119 4.119 14 C -0.536 4.536 15 H 0.050 0.950 16 C 0.029 3.971 17 N -0.899 5.899 18 Si 0.953 3.047 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.274 1.274 22 C -0.025 4.025 23 H 0.088 0.912 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.200 0.800 27 H 0.168 0.832 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.033 0.967 31 H 0.064 0.936 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.262 0.738 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.194 9.275 0.036 20.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.141 4.141 3 C -0.027 4.027 4 N -0.213 5.213 5 C -0.011 4.011 6 C -0.188 4.188 7 C 0.351 3.649 8 O -0.431 6.431 9 O -0.260 6.260 10 C 0.024 3.976 11 C 0.061 3.939 12 C -0.177 4.177 13 C -0.177 4.177 14 C -0.574 4.574 15 H 0.069 0.931 16 C -0.172 4.172 17 N -0.537 5.537 18 Si 0.779 3.221 19 H -0.200 1.200 20 H -0.207 1.207 21 H -0.200 1.200 22 C -0.050 4.050 23 H 0.107 0.893 24 H 0.114 0.886 25 H 0.094 0.906 26 H 0.216 0.784 27 H 0.185 0.815 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -17.666 9.819 0.032 20.211 hybrid contribution 0.555 -2.171 0.005 2.241 sum -17.112 7.648 0.038 18.743 Atomic orbital electron populations 1.20834 0.86523 1.04853 1.04123 1.21274 0.99911 0.92275 1.00673 1.23697 0.89301 0.99452 0.90201 1.67872 1.09398 1.30417 1.13584 1.23244 1.01351 0.86271 0.90188 1.20201 0.94686 0.91997 1.11922 1.21460 0.81904 0.89423 0.72164 1.90772 1.72879 1.31760 1.47735 1.86547 1.18580 1.38138 1.82740 1.23344 0.92909 0.81185 1.00184 1.18274 0.86358 0.95192 0.94058 1.21628 1.02437 0.97082 0.96528 1.21628 1.02433 0.97078 0.96530 1.21174 0.91905 0.91913 1.52431 0.93145 1.25510 0.98047 0.99279 0.94317 1.69936 1.07519 1.26298 1.49955 0.85699 0.77503 0.80319 0.78614 1.19989 1.20707 1.19976 1.21843 0.91139 1.00657 0.91369 0.89317 0.88566 0.90585 0.78367 0.81467 0.92932 0.92945 0.94840 0.91761 0.96132 0.96127 0.91766 0.94842 0.92802 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.03 71.24 0.71 -0.15 16 2 C -0.14 -2.27 5.89 -19.81 -0.12 -2.38 16 3 C 0.13 2.21 10.85 84.71 0.92 3.13 16 4 N -0.50 -12.25 10.35 -194.70 -2.01 -14.26 16 5 C 0.15 4.02 10.79 85.04 0.92 4.94 16 6 C -0.18 -5.35 5.89 -20.00 -0.12 -5.47 16 7 C 0.50 18.47 7.91 70.33 0.56 19.03 16 8 O -0.54 -21.95 16.21 19.93 0.32 -21.62 16 9 O -0.34 -13.78 8.16 -56.21 -0.46 -14.24 16 10 C 0.10 4.34 4.27 71.98 0.31 4.65 16 11 C 0.06 3.03 0.58 -52.93 -0.03 3.00 16 12 C -0.12 -5.74 8.11 71.98 0.58 -5.15 16 13 C -0.12 -5.73 8.11 71.98 0.58 -5.15 16 14 C -0.54 -28.88 8.01 25.60 0.21 -28.67 16 15 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 16 C 0.03 1.53 5.15 84.65 0.44 1.97 16 17 N -0.90 -49.07 9.35 21.45 0.20 -48.87 16 18 Si 0.95 42.66 29.54 68.60 2.03 44.69 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 C -0.02 -0.56 9.39 22.74 0.21 -0.35 16 23 H 0.09 0.56 8.14 -2.39 -0.02 0.55 16 24 H 0.10 0.39 8.09 -2.39 -0.02 0.37 16 25 H 0.08 0.60 8.09 -2.39 -0.02 0.58 16 26 H 0.20 1.72 8.06 -2.91 -0.02 1.70 16 27 H 0.17 4.68 7.62 -2.91 -0.02 4.65 16 28 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.03 1.45 7.68 -2.39 -0.02 1.43 16 31 H 0.06 3.37 6.07 -2.39 -0.01 3.35 16 32 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 35 H 0.03 1.45 7.68 -2.39 -0.02 1.43 16 36 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 37 H 0.15 3.25 7.74 -2.91 -0.02 3.23 16 Total: -1.00 -62.80 313.76 6.31 -56.50 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 1.06 Total: 8.44 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: 5.17 Total: -10.62 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -1.81 Total: -63.13 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -0.14 Total: -35.87 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -62.80 6.31 -56.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764833908.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.499 kcal (2) G-P(sol) polarization free energy of solvation -62.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds