Wall clock time and date at job start Mon Mar 30 2020 06:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34885 * 120.00472 * 2 1 4 4 C 1.47114 * 120.00062 * 190.54001 * 3 2 1 5 5 C 1.39898 * 120.14366 * 43.83758 * 4 3 2 6 6 C 1.37778 * 119.85256 * 179.97438 * 5 4 3 7 7 C 1.38684 * 120.14780 * 0.02562 * 6 5 4 8 8 F 1.35102 * 119.86060 * 179.97438 * 7 6 5 9 9 C 1.38687 * 120.28779 * 0.26818 * 7 6 5 10 10 C 1.37790 * 120.14755 * 359.45188 * 9 7 6 11 11 C 1.46351 * 119.99751 * 180.02562 * 2 1 3 12 12 O 1.21711 * 119.99758 * 187.35256 * 11 2 1 13 13 N 1.34771 * 119.99861 * 7.34949 * 11 2 1 14 14 C 1.46499 * 120.00029 * 180.02562 * 13 11 2 15 15 C 1.50704 * 109.47164 * 180.02562 * 14 13 11 16 16 H 1.07991 * 120.00253 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99891 * 179.97438 * 15 14 13 18 18 N 1.31523 * 120.00225 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00037 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.46971 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.46740 * 119.99756 * 19 17 15 22 22 H 1.48497 * 109.47114 * 239.99793 * 19 17 15 23 23 H 1.08997 * 109.47698 * 89.99428 * 1 2 3 24 24 H 1.08999 * 109.47498 * 210.00420 * 1 2 3 25 25 H 1.09007 * 109.46567 * 329.99875 * 1 2 3 26 26 H 1.08002 * 119.99769 * 10.54093 * 3 2 1 27 27 H 1.08002 * 120.06892 * 359.95314 * 5 4 3 28 28 H 1.08004 * 119.93116 * 180.02562 * 6 5 4 29 29 H 1.08006 * 119.92372 * 179.70826 * 9 7 6 30 30 H 1.07987 * 120.07625 * 180.27445 * 10 9 7 31 31 H 0.97000 * 119.99988 * 359.97438 * 13 11 2 32 32 H 1.08998 * 109.47115 * 299.99555 * 14 13 11 33 33 H 1.08999 * 109.47518 * 59.99744 * 14 13 11 34 34 H 0.96997 * 120.00338 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1815 1.1681 0.0000 4 6 3.6340 1.1787 -0.2330 5 6 4.1885 0.3915 -1.2479 6 6 5.5495 0.4065 -1.4613 7 6 6.3696 1.1992 -0.6723 8 9 7.7035 1.2090 -0.8863 9 6 5.8270 1.9773 0.3394 10 6 4.4668 1.9759 0.5595 11 6 2.2387 -1.2675 -0.0006 12 8 3.4483 -1.2719 0.1343 13 7 1.5730 -2.4297 -0.1504 14 6 2.3054 -3.6985 -0.1504 15 6 1.3362 -4.8380 -0.3334 16 1 0.2803 -4.6372 -0.4387 17 6 1.7975 -6.1368 -0.3664 18 7 3.0835 -6.3814 -0.2387 19 14 0.5961 -7.5492 -0.5925 20 1 -0.7829 -7.0117 -0.7123 21 1 0.9426 -8.3011 -1.8255 22 1 0.6739 -8.4577 0.5796 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5139 26 1 1.6552 2.0955 0.1711 27 1 3.5510 -0.2268 -1.8625 28 1 5.9789 -0.2005 -2.2447 29 1 6.4716 2.5888 0.9534 30 1 4.0450 2.5856 1.3447 31 1 0.6090 -2.4262 -0.2575 32 1 3.0272 -3.7014 -0.9671 33 1 2.8295 -3.8156 0.7981 34 1 3.4081 -7.2951 -0.2622 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787623255.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:56 Heat of formation + Delta-G solvation = -43.717486 kcal Electronic energy + Delta-G solvation = -18936.776440 eV Core-core repulsion = 15749.339680 eV Total energy + Delta-G solvation = -3187.436760 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.68363 -39.70703 -38.10002 -34.52063 -34.21254 -32.42050 -30.92912 -30.47038 -27.32318 -26.36212 -23.74853 -22.78664 -22.07803 -20.89367 -18.88074 -17.59103 -16.86611 -16.15713 -15.88882 -15.36349 -15.30981 -14.75553 -14.60064 -14.24414 -13.71136 -13.36030 -13.24348 -13.14304 -12.86252 -12.71085 -12.30844 -12.03739 -11.97484 -11.67983 -11.29909 -10.96897 -10.93967 -10.82494 -10.33973 -9.51839 -9.39998 -9.13427 -8.83070 -8.66208 -7.86480 -7.73250 -6.19539 -4.26787 0.85147 1.56472 1.96723 3.21442 3.28641 3.31499 3.84859 3.89908 4.10214 4.35927 4.48848 4.77179 4.94210 5.06771 5.16812 5.20990 5.24616 5.42987 5.58131 5.62266 5.64115 5.89403 6.09996 6.15088 6.29317 6.35577 6.44251 6.54846 6.78114 7.12780 7.28391 7.39017 7.47875 7.63880 7.93693 8.58467 8.74742 9.05469 9.40166 10.90629 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.023034 B = 0.004750 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.308629 B = 5892.965555 C = 6907.219742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.161 4.161 3 C -0.057 4.057 4 C -0.067 4.067 5 C -0.003 4.003 6 C -0.164 4.164 7 C 0.100 3.900 8 F -0.146 7.146 9 C -0.170 4.170 10 C -0.079 4.079 11 C 0.524 3.476 12 O -0.541 6.541 13 N -0.703 5.703 14 C 0.249 3.751 15 C -0.544 4.544 16 H 0.063 0.937 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.132 0.868 27 H 0.124 0.876 28 H 0.131 0.869 29 H 0.129 0.871 30 H 0.127 0.873 31 H 0.391 0.609 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.450 16.717 -0.697 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.164 4.164 3 C -0.077 4.077 4 C -0.067 4.067 5 C -0.021 4.021 6 C -0.182 4.182 7 C 0.081 3.919 8 F -0.125 7.125 9 C -0.189 4.189 10 C -0.097 4.097 11 C 0.311 3.689 12 O -0.422 6.422 13 N -0.350 5.350 14 C 0.128 3.872 15 C -0.582 4.582 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.149 0.851 27 H 0.142 0.858 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.224 0.776 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.410 16.480 -0.605 16.552 hybrid contribution -0.774 -1.054 -0.059 1.309 sum -2.184 15.426 -0.664 15.594 Atomic orbital electron populations 1.20813 0.90773 1.03134 1.02641 1.22158 0.96370 0.93831 1.03999 1.22016 0.92249 0.96872 0.96541 1.18848 0.93063 0.97906 0.96930 1.20964 0.93876 0.92211 0.95041 1.20932 0.94031 1.01288 1.01993 1.17827 0.76934 0.99486 0.97658 1.91459 1.31234 1.95489 1.94333 1.20833 0.96075 1.02620 0.99381 1.20942 0.92255 0.98124 0.98354 1.18232 0.87609 0.84359 0.78716 1.90843 1.13565 1.87071 1.50724 1.46532 1.11106 1.07478 1.69894 1.19128 0.92387 0.77881 0.97806 1.21252 0.93729 0.91024 1.52226 0.91877 1.24951 0.95376 0.98941 0.94702 1.69985 1.12900 1.20754 1.48582 0.86367 0.80867 0.81834 0.77886 1.19614 1.20775 1.20775 0.90590 0.91185 0.91290 0.85058 0.85818 0.85139 0.85329 0.85466 0.77581 0.95413 0.95432 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.46 36.00 0.34 -0.89 16 2 C -0.16 -2.29 5.88 -102.55 -0.60 -2.89 16 3 C -0.06 -0.73 9.43 -37.17 -0.35 -1.08 16 4 C -0.07 -1.00 4.54 -105.05 -0.48 -1.47 16 5 C 0.00 -0.04 6.59 -39.13 -0.26 -0.30 16 6 C -0.16 -2.63 10.01 -39.58 -0.40 -3.03 16 7 C 0.10 1.55 7.31 -39.25 -0.29 1.27 16 8 F -0.15 -2.28 17.26 2.25 0.04 -2.24 16 9 C -0.17 -2.33 10.01 -39.58 -0.40 -2.73 16 10 C -0.08 -1.04 9.79 -39.12 -0.38 -1.42 16 11 C 0.52 10.18 6.74 -13.00 -0.09 10.10 16 12 O -0.54 -12.29 12.14 5.18 0.06 -12.23 16 13 N -0.70 -14.48 5.47 -62.91 -0.34 -14.83 16 14 C 0.25 6.49 5.43 -5.19 -0.03 6.46 16 15 C -0.54 -14.58 9.28 -34.44 -0.32 -14.90 16 16 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.88 -25.95 13.29 55.43 0.74 -25.22 16 19 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.07 0.77 7.00 -51.93 -0.36 0.40 16 25 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 26 H 0.13 1.19 8.05 -52.49 -0.42 0.77 16 27 H 0.12 2.08 7.00 -52.49 -0.37 1.72 16 28 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 29 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 30 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.39 6.94 6.60 -40.82 -0.27 6.67 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 300.16 15.07 4.52 4.52 Total: -1.00 -31.62 300.16 -7.26 -38.88 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -3.91 Total: 4.69 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -3.34 Total: -9.22 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.39 Total: -40.04 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.06 Total: -12.23 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.62 -7.26 -38.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787623255.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.838 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds