Wall clock time and date at job start Mon Mar 30 2020 06:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34885 * 120.00472 * 2 1 4 4 C 1.47114 * 120.00062 * 190.54001 * 3 2 1 5 5 C 1.39898 * 120.14366 * 43.83758 * 4 3 2 6 6 C 1.37778 * 119.85256 * 179.97438 * 5 4 3 7 7 C 1.38684 * 120.14780 * 0.02562 * 6 5 4 8 8 F 1.35102 * 119.86060 * 179.97438 * 7 6 5 9 9 C 1.38687 * 120.28779 * 0.26818 * 7 6 5 10 10 C 1.37790 * 120.14755 * 359.45188 * 9 7 6 11 11 C 1.46351 * 119.99751 * 180.02562 * 2 1 3 12 12 O 1.21711 * 119.99758 * 187.35256 * 11 2 1 13 13 N 1.34771 * 119.99861 * 7.34949 * 11 2 1 14 14 C 1.46499 * 120.00029 * 180.02562 * 13 11 2 15 15 C 1.50704 * 109.47164 * 180.02562 * 14 13 11 16 16 H 1.07991 * 120.00253 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99891 * 179.97438 * 15 14 13 18 18 N 1.31523 * 120.00225 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00037 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.46971 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.46740 * 119.99756 * 19 17 15 22 22 H 1.48497 * 109.47114 * 239.99793 * 19 17 15 23 23 H 1.08997 * 109.47698 * 89.99428 * 1 2 3 24 24 H 1.08999 * 109.47498 * 210.00420 * 1 2 3 25 25 H 1.09007 * 109.46567 * 329.99875 * 1 2 3 26 26 H 1.08002 * 119.99769 * 10.54093 * 3 2 1 27 27 H 1.08002 * 120.06892 * 359.95314 * 5 4 3 28 28 H 1.08004 * 119.93116 * 180.02562 * 6 5 4 29 29 H 1.08006 * 119.92372 * 179.70826 * 9 7 6 30 30 H 1.07987 * 120.07625 * 180.27445 * 10 9 7 31 31 H 0.97000 * 119.99988 * 359.97438 * 13 11 2 32 32 H 1.08998 * 109.47115 * 299.99555 * 14 13 11 33 33 H 1.08999 * 109.47518 * 59.99744 * 14 13 11 34 34 H 0.96997 * 120.00338 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1815 1.1681 0.0000 4 6 3.6340 1.1787 -0.2330 5 6 4.1885 0.3915 -1.2479 6 6 5.5495 0.4065 -1.4613 7 6 6.3696 1.1992 -0.6723 8 9 7.7035 1.2090 -0.8863 9 6 5.8270 1.9773 0.3394 10 6 4.4668 1.9759 0.5595 11 6 2.2387 -1.2675 -0.0006 12 8 3.4483 -1.2719 0.1343 13 7 1.5730 -2.4297 -0.1504 14 6 2.3054 -3.6985 -0.1504 15 6 1.3362 -4.8380 -0.3334 16 1 0.2803 -4.6372 -0.4387 17 6 1.7975 -6.1368 -0.3664 18 7 3.0835 -6.3814 -0.2387 19 14 0.5961 -7.5492 -0.5925 20 1 -0.7829 -7.0117 -0.7123 21 1 0.9426 -8.3011 -1.8255 22 1 0.6739 -8.4577 0.5796 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5139 26 1 1.6552 2.0955 0.1711 27 1 3.5510 -0.2268 -1.8625 28 1 5.9789 -0.2005 -2.2447 29 1 6.4716 2.5888 0.9534 30 1 4.0450 2.5856 1.3447 31 1 0.6090 -2.4262 -0.2575 32 1 3.0272 -3.7014 -0.9671 33 1 2.8295 -3.8156 0.7981 34 1 3.4081 -7.2951 -0.2622 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787623255.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:56 Heat of formation + Delta-G solvation = -63.716567 kcal Electronic energy + Delta-G solvation = -18937.643666 eV Core-core repulsion = 15749.339680 eV Total energy + Delta-G solvation = -3188.303985 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.106 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.90370 -41.10060 -39.41407 -36.21535 -35.55657 -34.37226 -32.07986 -31.65008 -29.28314 -27.33950 -25.46898 -24.08268 -23.44898 -22.33640 -20.45662 -18.80111 -18.44024 -17.63296 -17.30421 -16.98881 -16.59305 -16.37380 -16.14551 -15.63898 -15.00844 -14.54148 -14.49271 -14.34364 -14.16041 -13.99174 -13.86830 -13.66204 -13.27255 -12.98764 -12.85748 -12.75379 -12.34622 -12.22007 -11.97224 -11.46865 -10.84532 -10.82024 -10.38816 -10.03802 -9.63329 -8.92759 -8.30965 -6.47807 -0.30993 0.40443 0.80824 1.42047 1.43109 1.56678 2.32384 2.39382 2.66778 2.74803 3.04356 3.32264 3.75159 3.80810 3.95284 3.97672 4.29506 4.34894 4.50111 4.67139 4.90303 4.94115 4.99906 5.09688 5.14658 5.20173 5.21393 5.22619 5.39786 5.43661 5.47966 5.64677 5.76600 5.84119 5.99135 6.63896 6.93715 7.22165 7.50563 8.81399 Molecular weight = 263.11amu Principal moments of inertia in cm(-1) A = 0.023034 B = 0.004750 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.308629 B = 5892.965555 C = 6907.219742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.177 4.177 3 C -0.031 4.031 4 C -0.084 4.084 5 C -0.023 4.023 6 C -0.185 4.185 7 C 0.080 3.920 8 F -0.151 7.151 9 C -0.166 4.166 10 C -0.072 4.072 11 C 0.518 3.482 12 O -0.582 6.582 13 N -0.702 5.702 14 C 0.268 3.732 15 C -0.555 4.555 16 H 0.083 0.917 17 C 0.004 3.996 18 N -0.932 5.932 19 Si 0.984 3.016 20 H -0.251 1.251 21 H -0.279 1.279 22 H -0.279 1.279 23 H 0.088 0.912 24 H 0.061 0.939 25 H 0.103 0.897 26 H 0.185 0.815 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.158 0.842 30 H 0.169 0.831 31 H 0.406 0.594 32 H -0.013 1.013 33 H -0.015 1.015 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 18.652 0.171 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.180 4.180 3 C -0.050 4.050 4 C -0.084 4.084 5 C -0.042 4.042 6 C -0.204 4.204 7 C 0.061 3.939 8 F -0.130 7.130 9 C -0.185 4.185 10 C -0.089 4.089 11 C 0.307 3.693 12 O -0.465 6.465 13 N -0.351 5.351 14 C 0.145 3.855 15 C -0.593 4.593 16 H 0.102 0.898 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.807 3.193 20 H -0.175 1.175 21 H -0.205 1.205 22 H -0.205 1.205 23 H 0.107 0.893 24 H 0.080 0.920 25 H 0.121 0.879 26 H 0.202 0.798 27 H 0.123 0.877 28 H 0.143 0.857 29 H 0.176 0.824 30 H 0.187 0.813 31 H 0.243 0.757 32 H 0.005 0.995 33 H 0.003 0.997 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.171 18.458 0.258 18.925 hybrid contribution 0.202 -1.555 -0.326 1.601 sum -3.969 16.903 -0.068 17.363 Atomic orbital electron populations 1.20858 0.87538 1.04440 1.03862 1.22074 0.98264 0.91063 1.06577 1.22511 0.90982 0.98254 0.93219 1.19252 0.94913 0.97656 0.96566 1.20944 0.93785 0.93110 0.96321 1.21038 0.94541 1.02125 1.02730 1.18060 0.76784 1.00388 0.98634 1.91440 1.31466 1.95601 1.94483 1.21244 0.96981 1.01793 0.98464 1.21412 0.91802 0.97389 0.98318 1.19204 0.87462 0.85702 0.76895 1.90829 1.15672 1.87873 1.52119 1.46250 1.11656 1.06257 1.70975 1.18501 0.92089 0.80920 0.93950 1.21650 0.94611 0.91294 1.51735 0.89848 1.26069 0.97250 1.02277 0.93968 1.70151 1.15494 1.21602 1.49840 0.85116 0.78906 0.77567 0.77669 1.17457 1.20494 1.20473 0.89347 0.91988 0.87860 0.79752 0.87675 0.85691 0.82397 0.81329 0.75738 0.99523 0.99706 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 9.46 71.23 0.67 -1.26 16 2 C -0.18 -4.67 5.88 -18.52 -0.11 -4.78 16 3 C -0.03 -0.67 9.43 23.83 0.22 -0.45 16 4 C -0.08 -2.35 4.54 -20.14 -0.09 -2.44 16 5 C -0.02 -0.79 6.59 22.56 0.15 -0.64 16 6 C -0.19 -6.33 10.01 22.27 0.22 -6.11 16 7 C 0.08 2.53 7.31 22.48 0.16 2.69 16 8 F -0.15 -4.80 17.26 44.97 0.78 -4.02 16 9 C -0.17 -4.24 10.01 22.27 0.22 -4.02 16 10 C -0.07 -1.68 9.79 22.57 0.22 -1.46 16 11 C 0.52 20.51 6.74 86.35 0.58 21.09 16 12 O -0.58 -27.70 12.14 -4.38 -0.05 -27.75 16 13 N -0.70 -29.78 5.47 -471.15 -2.58 -32.36 16 14 C 0.27 14.83 5.43 85.63 0.46 15.29 16 15 C -0.56 -30.28 9.28 25.60 0.24 -30.05 16 16 H 0.08 4.11 7.60 -2.92 -0.02 4.08 16 17 C 0.00 0.21 5.46 84.65 0.46 0.67 16 18 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 19 Si 0.98 42.34 29.54 68.60 2.03 44.37 16 20 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 21 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 23 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.06 1.19 7.00 -2.39 -0.02 1.17 16 25 H 0.10 1.13 8.07 -2.38 -0.02 1.11 16 26 H 0.19 2.14 8.05 -2.91 -0.02 2.11 16 27 H 0.11 3.83 7.00 -2.91 -0.02 3.81 16 28 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 29 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 30 H 0.17 2.54 8.06 -2.92 -0.02 2.51 16 31 H 0.41 14.37 6.60 -92.71 -0.61 13.76 16 32 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 33 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 34 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -73.81 300.16 4.39 -69.42 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.51 Total: 18.23 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 3.42 Total: -11.43 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -2.29 Total: -88.81 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.05 Total: -27.75 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.78 Total: -4.02 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -73.81 4.39 -69.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787623255.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.707 kcal (2) G-P(sol) polarization free energy of solvation -73.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds