Wall clock time and date at job start Mon Mar 30 2020 07:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37997 * 119.77789 * 2 1 4 4 C 1.38914 * 120.06598 * 180.02562 * 3 2 1 5 5 N 1.38843 * 120.17702 * 179.97438 * 4 3 2 6 6 C 1.40442 * 119.64658 * 359.97434 * 4 3 2 7 7 C 1.47293 * 120.21900 * 180.02562 * 6 4 3 8 8 O 1.21524 * 119.99674 * 5.60880 * 7 6 4 9 9 O 1.34766 * 119.99932 * 185.61072 * 7 6 4 10 10 C 1.45200 * 116.99479 * 180.02562 * 9 7 6 11 11 C 1.53009 * 109.47052 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47337 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99652 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99848 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00240 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99858 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47362 * 89.99786 * 16 14 12 18 18 H 1.48501 * 109.47030 * 210.00329 * 16 14 12 19 19 H 1.48506 * 109.47067 * 330.00170 * 16 14 12 20 20 C 1.39759 * 119.56867 * 359.73332 * 6 4 3 21 21 C 1.37763 * 119.92169 * 0.54082 * 20 6 4 22 22 C 1.50700 * 119.82433 * 179.75026 * 21 20 6 23 23 H 1.08996 * 109.47131 * 270.01922 * 1 2 3 24 24 H 1.08993 * 109.47606 * 30.02470 * 1 2 3 25 25 H 1.09008 * 109.46769 * 150.02524 * 1 2 3 26 26 H 1.07999 * 119.96833 * 359.97438 * 3 2 1 27 27 H 0.97000 * 120.00228 * 24.85178 * 5 4 3 28 28 H 0.97005 * 119.99862 * 204.84034 * 5 4 3 29 29 H 1.09001 * 109.47398 * 299.99462 * 10 9 7 30 30 H 1.09002 * 109.47636 * 60.00011 * 10 9 7 31 31 H 1.09001 * 109.46617 * 299.99986 * 11 10 9 32 32 H 1.09002 * 109.46854 * 59.99577 * 11 10 9 33 33 H 0.96998 * 119.99711 * 179.97438 * 15 14 12 34 34 H 1.07998 * 120.04293 * 180.27709 * 20 6 4 35 35 H 1.08997 * 109.47289 * 269.72829 * 22 21 20 36 36 H 1.09004 * 109.47184 * 149.72283 * 22 21 20 37 37 H 1.08998 * 109.46605 * 29.72616 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1923 1.1978 0.0000 4 6 3.5814 1.2047 -0.0005 5 7 4.2733 2.4085 -0.0011 6 6 4.2822 -0.0123 -0.0005 7 6 5.7552 -0.0196 -0.0005 8 8 6.3679 1.0248 0.1023 9 8 6.4232 -1.1845 -0.1146 10 6 7.8736 -1.1160 -0.1066 11 6 8.4515 -2.5260 -0.2443 12 6 9.9568 -2.4550 -0.2366 13 1 10.4518 -1.4996 -0.1425 14 6 10.7020 -3.6095 -0.3487 15 7 10.0992 -4.7728 -0.4628 16 14 12.5679 -3.5215 -0.3384 17 1 13.0611 -3.6342 1.0577 18 1 13.1204 -4.6355 -1.1501 19 1 13.0054 -2.2247 -0.9148 20 6 3.5730 -1.2166 0.0057 21 6 2.1954 -1.2028 0.0005 22 6 1.4329 -2.5026 0.0015 23 1 -0.3633 0.0003 1.0276 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3633 -0.8903 -0.5135 26 1 1.6482 2.1307 -0.0004 27 1 3.8543 3.2089 0.3519 28 1 5.1758 2.4490 -0.3543 29 1 8.2129 -0.5009 -0.9401 30 1 8.2114 -0.6753 0.8313 31 1 8.1121 -3.1407 0.5894 32 1 8.1137 -2.9672 -1.1821 33 1 10.6235 -5.5850 -0.5420 34 1 4.1042 -2.1569 0.0102 35 1 1.2487 -2.8166 -1.0259 36 1 0.4816 -2.3654 0.5156 37 1 2.0169 -3.2660 0.5155 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796162216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:03 Heat of formation + Delta-G solvation = -82.272356 kcal Electronic energy + Delta-G solvation = -19025.176246 eV Core-core repulsion = 15959.527927 eV Total energy + Delta-G solvation = -3065.648320 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.39199 -38.97517 -36.33017 -34.98791 -33.37025 -32.61804 -30.91653 -30.18893 -27.86946 -25.90665 -24.96886 -22.71140 -22.09658 -20.78599 -19.98392 -17.58316 -16.86805 -16.57834 -16.10440 -15.91559 -15.67244 -14.78969 -14.54414 -14.30422 -14.04396 -13.70161 -13.28453 -12.90646 -12.75421 -12.58223 -12.34111 -12.21563 -12.10744 -11.55989 -11.22913 -11.19469 -11.01453 -10.73771 -10.66557 -10.26894 -9.98573 -9.61952 -9.57007 -9.28306 -8.83692 -8.43121 -7.55848 -6.09254 -4.13475 0.88093 1.52049 2.82131 3.26330 3.29307 3.35632 3.41004 3.84289 3.92621 4.40308 4.67227 4.77548 4.99964 5.12884 5.19750 5.27312 5.38824 5.44489 5.58302 5.61098 5.64310 5.71831 6.00241 6.02475 6.12193 6.12526 6.21209 6.28888 6.59813 6.66493 6.81403 7.00513 7.48082 7.58125 7.64496 7.86869 7.90653 8.22287 8.31643 8.92002 9.50771 11.02292 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031905 B = 0.003775 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.403540 B = 7415.163546 C = 8257.480682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.011 4.011 3 C -0.209 4.209 4 C 0.274 3.726 5 N -0.863 5.863 6 C -0.204 4.204 7 C 0.511 3.489 8 O -0.531 6.531 9 O -0.352 6.352 10 C 0.076 3.924 11 C 0.025 3.975 12 C -0.526 4.526 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.899 3.101 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.011 4.011 21 C -0.160 4.160 22 C -0.107 4.107 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.126 0.874 27 H 0.394 0.606 28 H 0.413 0.587 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.263 0.737 34 H 0.140 0.860 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.928 9.608 0.845 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.012 4.012 3 C -0.232 4.232 4 C 0.164 3.836 5 N -0.408 5.408 6 C -0.210 4.210 7 C 0.359 3.641 8 O -0.423 6.423 9 O -0.267 6.267 10 C 0.004 3.996 11 C -0.013 4.013 12 C -0.564 4.564 13 H 0.077 0.923 14 C -0.142 4.142 15 N -0.528 5.528 16 Si 0.727 3.273 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.030 4.030 21 C -0.162 4.162 22 C -0.163 4.163 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.144 0.856 27 H 0.222 0.778 28 H 0.251 0.749 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.158 0.842 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.622 9.651 0.832 21.882 hybrid contribution 1.422 0.447 0.044 1.492 sum -18.199 10.098 0.876 20.831 Atomic orbital electron populations 1.20908 0.91203 1.03025 1.02536 1.19710 0.95736 0.92101 0.93693 1.20481 0.91474 0.98209 1.12992 1.17615 0.90788 0.85617 0.89531 1.42876 1.20805 1.07422 1.69686 1.18808 0.89688 0.93536 1.18994 1.20952 0.88321 0.82344 0.72505 1.90571 1.70143 1.33264 1.48327 1.86586 1.25020 1.32888 1.82234 1.23633 0.72173 1.02925 1.00898 1.19169 0.95003 0.88309 0.98775 1.20980 0.90385 0.93486 1.51579 0.92287 1.24979 0.99035 0.95246 0.94890 1.69972 1.35696 0.97842 1.49312 0.86475 0.84919 0.77809 0.78120 1.20488 1.21049 1.19736 1.21232 0.93265 0.97352 0.91157 1.19477 0.93277 0.94979 1.08444 1.20702 0.99546 0.94031 1.02045 0.90755 0.91476 0.90882 0.85621 0.77805 0.74929 0.92360 0.92353 0.95343 0.95334 0.92720 0.84240 0.91625 0.91792 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.17 36.00 0.33 -0.53 16 2 C -0.01 -0.12 5.88 -104.58 -0.62 -0.74 16 3 C -0.21 -2.32 9.56 -39.42 -0.38 -2.70 16 4 C 0.27 3.72 6.76 -83.61 -0.57 3.15 16 5 N -0.86 -10.53 8.47 32.55 0.28 -10.26 16 6 C -0.20 -3.25 5.89 -104.82 -0.62 -3.86 16 7 C 0.51 9.75 7.86 34.41 0.27 10.02 16 8 O -0.53 -10.59 13.61 -19.28 -0.26 -10.85 16 9 O -0.35 -7.39 9.49 -40.67 -0.39 -7.78 16 10 C 0.08 1.75 5.42 37.16 0.20 1.95 16 11 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 12 C -0.53 -14.98 9.11 -34.44 -0.31 -15.29 16 13 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 16 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.01 -0.16 9.25 -39.19 -0.36 -0.52 16 21 C -0.16 -1.88 5.87 -104.67 -0.61 -2.50 16 22 C -0.11 -0.98 9.17 36.01 0.33 -0.65 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 25 H 0.07 0.47 6.67 -51.92 -0.35 0.12 16 26 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 27 H 0.39 3.54 8.91 -40.82 -0.36 3.17 16 28 H 0.41 5.77 6.13 -40.82 -0.25 5.52 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.14 2.01 7.62 -52.49 -0.40 1.61 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.48 6.67 -51.93 -0.35 0.13 16 37 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 LS Contribution 315.59 15.07 4.76 4.76 Total: -1.00 -31.55 315.59 -7.53 -39.08 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.05 Total: 3.82 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -2.58 Total: -9.52 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 1.01 Total: -36.05 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.65 Total: -18.63 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.55 -7.53 -39.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796162216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.196 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds