Wall clock time and date at job start Mon Mar 30 2020 07:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37997 * 119.77789 * 2 1 4 4 C 1.38914 * 120.06598 * 180.02562 * 3 2 1 5 5 N 1.38843 * 120.17702 * 179.97438 * 4 3 2 6 6 C 1.40442 * 119.64658 * 359.97434 * 4 3 2 7 7 C 1.47293 * 120.21900 * 180.02562 * 6 4 3 8 8 O 1.21524 * 119.99674 * 5.60880 * 7 6 4 9 9 O 1.34766 * 119.99932 * 185.61072 * 7 6 4 10 10 C 1.45200 * 116.99479 * 180.02562 * 9 7 6 11 11 C 1.53009 * 109.47052 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47337 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99652 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99848 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00240 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99858 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47362 * 89.99786 * 16 14 12 18 18 H 1.48501 * 109.47030 * 210.00329 * 16 14 12 19 19 H 1.48506 * 109.47067 * 330.00170 * 16 14 12 20 20 C 1.39759 * 119.56867 * 359.73332 * 6 4 3 21 21 C 1.37763 * 119.92169 * 0.54082 * 20 6 4 22 22 C 1.50700 * 119.82433 * 179.75026 * 21 20 6 23 23 H 1.08996 * 109.47131 * 270.01922 * 1 2 3 24 24 H 1.08993 * 109.47606 * 30.02470 * 1 2 3 25 25 H 1.09008 * 109.46769 * 150.02524 * 1 2 3 26 26 H 1.07999 * 119.96833 * 359.97438 * 3 2 1 27 27 H 0.97000 * 120.00228 * 24.85178 * 5 4 3 28 28 H 0.97005 * 119.99862 * 204.84034 * 5 4 3 29 29 H 1.09001 * 109.47398 * 299.99462 * 10 9 7 30 30 H 1.09002 * 109.47636 * 60.00011 * 10 9 7 31 31 H 1.09001 * 109.46617 * 299.99986 * 11 10 9 32 32 H 1.09002 * 109.46854 * 59.99577 * 11 10 9 33 33 H 0.96998 * 119.99711 * 179.97438 * 15 14 12 34 34 H 1.07998 * 120.04293 * 180.27709 * 20 6 4 35 35 H 1.08997 * 109.47289 * 269.72829 * 22 21 20 36 36 H 1.09004 * 109.47184 * 149.72283 * 22 21 20 37 37 H 1.08998 * 109.46605 * 29.72616 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1923 1.1978 0.0000 4 6 3.5814 1.2047 -0.0005 5 7 4.2733 2.4085 -0.0011 6 6 4.2822 -0.0123 -0.0005 7 6 5.7552 -0.0196 -0.0005 8 8 6.3679 1.0248 0.1023 9 8 6.4232 -1.1845 -0.1146 10 6 7.8736 -1.1160 -0.1066 11 6 8.4515 -2.5260 -0.2443 12 6 9.9568 -2.4550 -0.2366 13 1 10.4518 -1.4996 -0.1425 14 6 10.7020 -3.6095 -0.3487 15 7 10.0992 -4.7728 -0.4628 16 14 12.5679 -3.5215 -0.3384 17 1 13.0611 -3.6342 1.0577 18 1 13.1204 -4.6355 -1.1501 19 1 13.0054 -2.2247 -0.9148 20 6 3.5730 -1.2166 0.0057 21 6 2.1954 -1.2028 0.0005 22 6 1.4329 -2.5026 0.0015 23 1 -0.3633 0.0003 1.0276 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3633 -0.8903 -0.5135 26 1 1.6482 2.1307 -0.0004 27 1 3.8543 3.2089 0.3519 28 1 5.1758 2.4490 -0.3543 29 1 8.2129 -0.5009 -0.9401 30 1 8.2114 -0.6753 0.8313 31 1 8.1121 -3.1407 0.5894 32 1 8.1137 -2.9672 -1.1821 33 1 10.6235 -5.5850 -0.5420 34 1 4.1042 -2.1569 0.0102 35 1 1.2487 -2.8166 -1.0259 36 1 0.4816 -2.3654 0.5156 37 1 2.0169 -3.2660 0.5155 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796162216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:02 Heat of formation + Delta-G solvation = -100.884557 kcal Electronic energy + Delta-G solvation = -19025.983332 eV Core-core repulsion = 15959.527927 eV Total energy + Delta-G solvation = -3066.455405 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.70621 -40.19396 -37.82114 -36.09568 -35.46261 -33.65652 -32.27978 -31.72066 -28.79338 -27.12566 -26.65641 -23.97099 -23.29023 -22.61675 -21.17916 -19.06269 -18.36251 -17.81348 -17.78469 -17.43219 -16.95804 -16.51751 -15.78194 -15.21326 -15.18492 -14.86755 -14.63055 -14.40792 -14.22203 -13.51238 -13.48672 -13.19562 -13.07877 -12.96794 -12.93848 -12.61160 -12.58957 -12.36570 -12.06739 -11.81846 -11.52977 -11.49723 -11.33187 -10.97552 -10.63134 -9.79794 -8.54086 -8.28510 -6.42237 -0.21873 0.54948 1.39648 1.42081 1.51128 1.53083 1.77319 2.39332 2.77989 2.96316 3.05617 3.66856 3.87193 3.96698 4.19054 4.21804 4.28049 4.35605 4.47559 4.66034 4.78038 4.79898 4.91259 4.94906 4.99590 5.12066 5.24538 5.27938 5.30717 5.39741 5.43305 5.49723 5.69950 5.72361 5.94575 6.04252 6.47923 6.69931 6.76184 6.93537 7.27533 8.84283 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031905 B = 0.003775 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.403540 B = 7415.163546 C = 8257.480682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.002 4.002 3 C -0.204 4.204 4 C 0.267 3.733 5 N -0.858 5.858 6 C -0.237 4.237 7 C 0.504 3.496 8 O -0.546 6.546 9 O -0.362 6.362 10 C 0.092 3.908 11 C 0.032 3.968 12 C -0.552 4.552 13 H 0.065 0.935 14 C 0.006 3.994 15 N -0.926 5.926 16 Si 0.976 3.024 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.263 1.263 20 C -0.030 4.030 21 C -0.162 4.162 22 C -0.107 4.107 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.158 0.842 27 H 0.409 0.591 28 H 0.405 0.595 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.268 0.732 34 H 0.124 0.876 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.632 10.779 0.961 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.003 4.003 3 C -0.226 4.226 4 C 0.157 3.843 5 N -0.403 5.403 6 C -0.243 4.243 7 C 0.354 3.646 8 O -0.440 6.440 9 O -0.279 6.279 10 C 0.019 3.981 11 C -0.005 4.005 12 C -0.589 4.589 13 H 0.083 0.917 14 C -0.193 4.193 15 N -0.565 5.565 16 Si 0.799 3.201 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.187 1.187 20 C -0.049 4.049 21 C -0.164 4.164 22 C -0.163 4.163 23 H 0.109 0.891 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.176 0.824 27 H 0.240 0.760 28 H 0.240 0.760 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.024 0.976 32 H 0.024 0.976 33 H 0.077 0.923 34 H 0.142 0.858 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.362 10.851 0.958 23.978 hybrid contribution 1.768 0.108 0.007 1.771 sum -19.594 10.958 0.965 22.471 Atomic orbital electron populations 1.21021 0.88078 1.04528 1.03957 1.20199 0.97889 0.91206 0.91023 1.20851 0.90260 0.99903 1.11581 1.17845 0.91885 0.85069 0.89474 1.42846 1.20407 1.07793 1.69273 1.18805 0.87543 0.95379 1.22604 1.21621 0.89665 0.81368 0.71969 1.90548 1.70743 1.33311 1.49377 1.86575 1.23727 1.34571 1.83002 1.23162 0.73705 1.00377 1.00859 1.18974 0.95000 0.90000 0.96546 1.21362 0.91332 0.94101 1.52130 0.91699 1.25985 1.04693 0.94643 0.93988 1.70097 1.37968 0.98696 1.49768 0.85295 0.77964 0.78275 0.78587 1.19482 1.20254 1.18725 1.21226 0.94629 0.96319 0.92686 1.19809 0.92308 0.96930 1.07304 1.20771 1.00142 0.92494 1.02901 0.89101 0.89747 0.89747 0.82436 0.75954 0.75972 0.92208 0.92338 0.97607 0.97582 0.92276 0.85759 0.90735 0.89359 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 9.17 71.23 0.65 -0.52 16 2 C 0.00 -0.04 5.88 -19.84 -0.12 -0.15 16 3 C -0.20 -3.96 9.56 22.37 0.21 -3.74 16 4 C 0.27 7.02 6.76 38.73 0.26 7.29 16 5 N -0.86 -20.26 8.47 -50.93 -0.43 -20.69 16 6 C -0.24 -7.73 5.89 -19.99 -0.12 -7.84 16 7 C 0.50 20.10 7.86 70.20 0.55 20.65 16 8 O -0.55 -22.52 13.61 19.76 0.27 -22.25 16 9 O -0.36 -16.13 9.49 -56.76 -0.54 -16.67 16 10 C 0.09 4.42 5.42 71.99 0.39 4.81 16 11 C 0.03 1.79 5.35 29.85 0.16 1.95 16 12 C -0.55 -32.13 9.11 25.60 0.23 -31.90 16 13 H 0.06 3.61 7.74 -2.91 -0.02 3.59 16 14 C 0.01 0.34 5.46 84.65 0.46 0.81 16 15 N -0.93 -56.37 13.29 21.45 0.28 -56.08 16 16 Si 0.98 44.30 29.54 68.60 2.03 46.33 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 20 C -0.03 -0.87 9.25 22.53 0.21 -0.67 16 21 C -0.16 -3.59 5.87 -19.89 -0.12 -3.71 16 22 C -0.11 -1.75 9.17 71.24 0.65 -1.10 16 23 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.08 0.60 8.08 -2.39 -0.02 0.58 16 25 H 0.08 0.69 6.67 -2.38 -0.02 0.68 16 26 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 27 H 0.41 6.69 8.91 -92.71 -0.83 5.86 16 28 H 0.41 11.35 6.13 -92.70 -0.57 10.78 16 29 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 34 H 0.12 3.88 7.62 -2.91 -0.02 3.86 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.09 1.02 6.67 -2.39 -0.02 1.00 16 37 H 0.06 1.07 8.08 -2.39 -0.02 1.05 16 Total: -1.00 -69.81 315.59 4.75 -65.06 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -0.30 Total: 18.43 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: 3.44 Total: -14.13 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -0.15 Total: -76.77 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -0.27 Total: -38.91 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -69.81 4.75 -65.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796162216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.820 kcal (2) G-P(sol) polarization free energy of solvation -69.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds