Wall clock time and date at job start Mon Mar 30 2020 07:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99736 * 2 1 4 4 H 1.48504 * 109.46895 * 239.99779 * 3 2 1 5 5 H 1.48496 * 109.47483 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47279 * 120.00070 * 3 2 1 7 7 C 1.37876 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99858 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46908 * 179.97438 * 9 7 2 11 11 O 1.45208 * 109.47067 * 179.97438 * 10 9 7 12 12 C 1.34781 * 116.99777 * 179.97438 * 11 10 9 13 13 O 1.21545 * 120.00451 * 0.02562 * 12 11 10 14 14 C 1.47115 * 119.99523 * 179.97438 * 12 11 10 15 15 C 1.46742 * 127.02782 * 0.03024 * 14 12 11 16 16 C 1.34426 * 106.37476 * 179.97438 * 15 14 12 17 17 N 1.36424 * 109.08940 * 359.97438 * 16 15 14 18 18 H 0.96996 * 124.81195 * 180.02562 * 17 16 15 19 19 C 1.34628 * 110.37910 * 0.02562 * 17 16 15 20 20 C 1.50704 * 125.89785 * 180.26284 * 19 17 16 21 21 C 1.53780 * 113.61292 * 37.18836 * 20 19 17 22 22 C 1.53782 * 87.08100 * 220.02298 * 21 20 19 23 23 C 1.53781 * 87.08222 * 25.43109 * 22 21 20 24 24 H 0.97002 * 120.00273 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47533 * 59.99755 * 9 7 2 26 26 H 1.09007 * 109.47110 * 299.99453 * 9 7 2 27 27 H 1.08999 * 109.47643 * 59.99742 * 10 9 7 28 28 H 1.09001 * 109.46825 * 299.99237 * 10 9 7 29 29 H 1.08003 * 126.80928 * 359.97438 * 15 14 12 30 30 H 1.08006 * 125.45776 * 180.02562 * 16 15 14 31 31 H 1.08996 * 112.85229 * 168.49809 * 20 19 17 32 32 H 1.09004 * 113.61790 * 334.56747 * 21 20 19 33 33 H 1.08991 * 113.61684 * 105.47171 * 21 20 19 34 34 H 1.09004 * 113.61288 * 270.88565 * 22 21 20 35 35 H 1.09000 * 113.61915 * 139.98233 * 22 21 20 36 36 H 1.08996 * 113.61587 * 220.02015 * 23 22 21 37 37 H 1.09004 * 113.68608 * 89.13065 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 8 1.5194 -4.9195 0.0011 12 6 2.2535 -6.0498 0.0007 13 8 3.4673 -5.9862 0.0003 14 6 1.5856 -7.3606 0.0018 15 6 0.1406 -7.6162 0.0029 16 6 -0.0080 -8.9522 0.0031 17 7 1.2240 -9.5381 0.0018 18 1 1.3820 -10.4951 0.0013 19 6 2.1894 -8.5998 0.0011 20 6 3.6739 -8.8594 -0.0060 21 6 4.0838 -10.0681 -0.8638 22 6 5.0908 -10.4144 0.2458 23 6 4.1656 -9.6574 1.2132 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8721 -3.6043 0.8905 28 1 2.8719 -3.6042 -0.8895 29 1 -0.6471 -6.8773 0.0034 30 1 -0.9516 -9.4776 0.0035 31 1 4.2596 -7.9620 -0.2054 32 1 3.2924 -10.8084 -0.9817 33 1 4.5526 -9.7940 -1.8088 34 1 6.0647 -9.9429 0.1142 35 1 5.1609 -11.4820 0.4542 36 1 4.7003 -9.0518 1.9448 37 1 3.3961 -10.2843 1.6639 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808691718.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:30 Heat of formation + Delta-G solvation = -38.612494 kcal Electronic energy + Delta-G solvation = -19078.333158 eV Core-core repulsion = 16014.578072 eV Total energy + Delta-G solvation = -3063.755086 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.45586 -39.23256 -38.39871 -35.76012 -33.24641 -31.25125 -30.04267 -29.81007 -25.89434 -25.72946 -24.80923 -22.89041 -21.03981 -20.70470 -19.60254 -19.27052 -18.04395 -16.64965 -15.85329 -15.70182 -15.63810 -15.31840 -14.67328 -14.43832 -14.40577 -13.20447 -12.97828 -12.89860 -12.79095 -12.73097 -12.39045 -12.28765 -12.15640 -11.11718 -11.01594 -10.95186 -10.70357 -10.62623 -10.60538 -10.55807 -9.97032 -9.49368 -9.48935 -9.22628 -8.86035 -8.37088 -8.21575 -6.03477 -4.07371 1.64652 2.42394 2.94998 3.34786 3.38188 3.40748 3.63228 3.65143 4.31402 4.40767 4.43639 4.46425 4.71014 4.93996 4.96271 5.30667 5.32815 5.34699 5.42295 5.48249 5.61646 5.65614 5.76323 5.78252 5.96038 6.14197 6.21893 6.23843 6.32481 6.72594 6.77023 6.89576 7.23105 7.32470 7.66441 7.73271 7.96032 8.30862 8.53471 8.98196 9.56393 11.08116 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033169 B = 0.003661 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.968070 B = 7645.855453 C = 8345.424414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.077 3.923 11 O -0.351 6.351 12 C 0.534 3.466 13 O -0.532 6.532 14 C -0.214 4.214 15 C -0.139 4.139 16 C -0.029 4.029 17 N -0.547 5.547 18 H 0.413 0.587 19 C 0.119 3.881 20 C -0.057 4.057 21 C -0.138 4.138 22 C -0.139 4.139 23 C -0.133 4.133 24 H 0.263 0.737 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.154 0.846 30 H 0.170 0.830 31 H 0.138 0.862 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.532 -23.903 0.166 24.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.004 3.996 11 O -0.267 6.267 12 C 0.380 3.620 13 O -0.425 6.425 14 C -0.222 4.222 15 C -0.163 4.163 16 C -0.156 4.156 17 N -0.143 5.143 18 H 0.250 0.750 19 C 0.001 3.999 20 C -0.076 4.076 21 C -0.176 4.176 22 C -0.177 4.177 23 C -0.171 4.171 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.171 0.829 30 H 0.188 0.812 31 H 0.155 0.845 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.674 -23.827 0.166 24.109 hybrid contribution 0.396 0.591 0.002 0.712 sum 4.070 -23.236 0.168 23.590 Atomic orbital electron populations 1.69968 1.06078 1.26987 1.49917 1.24979 0.94905 0.99321 0.94968 0.86541 0.79477 0.82557 0.78756 1.20094 1.21177 1.20087 1.20968 0.93150 0.90214 1.52005 0.92325 1.19152 0.94220 0.89041 0.98818 1.23576 0.96301 0.78957 1.00755 1.86594 1.41754 1.15404 1.82975 1.20087 0.84983 0.84598 0.72302 1.90712 1.15097 1.88250 1.48419 1.19607 0.93633 0.89521 1.19455 1.22211 0.94704 0.94812 1.04558 1.21713 0.88082 0.93771 1.11999 1.41419 1.05710 1.08686 1.58455 0.74990 1.20263 0.90758 0.87288 1.01562 1.21646 0.88418 1.00131 0.97422 1.22996 0.99055 0.97020 0.98484 1.22819 0.98223 1.00381 0.96254 1.22971 0.99095 0.98416 0.96589 0.92726 0.95393 0.95383 0.92491 0.92485 0.82851 0.81236 0.84472 0.90844 0.90602 0.89547 0.91304 0.90520 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.53 -15.21 9.11 -34.44 -0.31 -15.52 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 9 C 0.02 0.68 5.35 -27.88 -0.15 0.53 16 10 C 0.08 1.82 5.42 37.16 0.20 2.03 16 11 O -0.35 -7.78 10.12 -40.71 -0.41 -8.19 16 12 C 0.53 10.70 7.95 34.33 0.27 10.97 16 13 O -0.53 -11.25 14.47 -19.30 -0.28 -11.53 16 14 C -0.21 -3.49 6.33 -103.01 -0.65 -4.14 16 15 C -0.14 -1.92 11.00 -37.49 -0.41 -2.34 16 16 C -0.03 -0.29 11.87 -16.86 -0.20 -0.49 16 17 N -0.55 -5.11 5.71 -8.88 -0.05 -5.17 16 18 H 0.41 2.40 8.21 -40.82 -0.34 2.07 16 19 C 0.12 1.53 6.27 -81.51 -0.51 1.02 16 20 C -0.06 -0.65 3.94 -90.96 -0.36 -1.01 16 21 C -0.14 -1.14 7.62 -25.92 -0.20 -1.34 16 22 C -0.14 -1.04 8.08 -25.92 -0.21 -1.25 16 23 C -0.13 -1.21 7.63 -25.92 -0.20 -1.41 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.15 2.08 8.06 -52.48 -0.42 1.65 16 30 H 0.17 1.08 8.06 -52.48 -0.42 0.65 16 31 H 0.14 1.95 5.99 -51.93 -0.31 1.64 16 32 H 0.07 0.49 7.21 -51.93 -0.37 0.11 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 LS Contribution 317.26 15.07 4.78 4.78 Total: -1.00 -33.29 317.26 -8.28 -41.57 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.21 Total: -0.73 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -2.82 Total: -11.31 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.69 Total: -31.38 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.69 Total: -19.73 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.29 -8.28 -41.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808691718.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.959 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds