Wall clock time and date at job start Mon Mar 30 2020 07:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99736 * 2 1 4 4 H 1.48504 * 109.46895 * 239.99779 * 3 2 1 5 5 H 1.48496 * 109.47483 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47279 * 120.00070 * 3 2 1 7 7 C 1.37876 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99858 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46908 * 179.97438 * 9 7 2 11 11 O 1.45208 * 109.47067 * 179.97438 * 10 9 7 12 12 C 1.34781 * 116.99777 * 179.97438 * 11 10 9 13 13 O 1.21545 * 120.00451 * 0.02562 * 12 11 10 14 14 C 1.47115 * 119.99523 * 179.97438 * 12 11 10 15 15 C 1.46742 * 127.02782 * 0.03024 * 14 12 11 16 16 C 1.34426 * 106.37476 * 179.97438 * 15 14 12 17 17 N 1.36424 * 109.08940 * 359.97438 * 16 15 14 18 18 H 0.96996 * 124.81195 * 180.02562 * 17 16 15 19 19 C 1.34628 * 110.37910 * 0.02562 * 17 16 15 20 20 C 1.50704 * 125.89785 * 180.26284 * 19 17 16 21 21 C 1.53780 * 113.61292 * 37.18836 * 20 19 17 22 22 C 1.53782 * 87.08100 * 220.02298 * 21 20 19 23 23 C 1.53781 * 87.08222 * 25.43109 * 22 21 20 24 24 H 0.97002 * 120.00273 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47533 * 59.99755 * 9 7 2 26 26 H 1.09007 * 109.47110 * 299.99453 * 9 7 2 27 27 H 1.08999 * 109.47643 * 59.99742 * 10 9 7 28 28 H 1.09001 * 109.46825 * 299.99237 * 10 9 7 29 29 H 1.08003 * 126.80928 * 359.97438 * 15 14 12 30 30 H 1.08006 * 125.45776 * 180.02562 * 16 15 14 31 31 H 1.08996 * 112.85229 * 168.49809 * 20 19 17 32 32 H 1.09004 * 113.61790 * 334.56747 * 21 20 19 33 33 H 1.08991 * 113.61684 * 105.47171 * 21 20 19 34 34 H 1.09004 * 113.61288 * 270.88565 * 22 21 20 35 35 H 1.09000 * 113.61915 * 139.98233 * 22 21 20 36 36 H 1.08996 * 113.61587 * 220.02015 * 23 22 21 37 37 H 1.09004 * 113.68608 * 89.13065 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 8 1.5194 -4.9195 0.0011 12 6 2.2535 -6.0498 0.0007 13 8 3.4673 -5.9862 0.0003 14 6 1.5856 -7.3606 0.0018 15 6 0.1406 -7.6162 0.0029 16 6 -0.0080 -8.9522 0.0031 17 7 1.2240 -9.5381 0.0018 18 1 1.3820 -10.4951 0.0013 19 6 2.1894 -8.5998 0.0011 20 6 3.6739 -8.8594 -0.0060 21 6 4.0838 -10.0681 -0.8638 22 6 5.0908 -10.4144 0.2458 23 6 4.1656 -9.6574 1.2132 24 1 -0.4851 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8721 -3.6043 0.8905 28 1 2.8719 -3.6042 -0.8895 29 1 -0.6471 -6.8773 0.0034 30 1 -0.9516 -9.4776 0.0035 31 1 4.2596 -7.9620 -0.2054 32 1 3.2924 -10.8084 -0.9817 33 1 4.5526 -9.7940 -1.8088 34 1 6.0647 -9.9429 0.1142 35 1 5.1609 -11.4820 0.4542 36 1 4.7003 -9.0518 1.9448 37 1 3.3961 -10.2843 1.6639 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808691718.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:29 Heat of formation + Delta-G solvation = -58.293659 kcal Electronic energy + Delta-G solvation = -19079.186597 eV Core-core repulsion = 16014.578072 eV Total energy + Delta-G solvation = -3064.608525 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.44469 -40.84948 -39.15406 -37.49031 -35.43173 -32.63439 -31.84686 -30.75803 -27.37199 -26.57166 -26.16355 -24.32654 -22.77960 -21.90068 -20.70270 -20.34620 -19.07781 -18.50694 -17.66618 -17.41230 -16.82626 -16.41651 -16.34026 -15.53629 -15.41482 -14.76136 -14.51916 -14.34118 -14.08175 -13.71198 -13.44470 -13.32289 -13.11787 -13.09670 -12.95105 -12.56392 -12.55656 -11.88480 -11.67123 -11.53621 -11.44360 -11.41713 -11.39857 -11.09109 -10.61102 -9.90994 -9.18946 -8.26696 -6.40648 0.41362 1.40532 1.44659 1.45226 1.52967 1.79029 2.26238 2.32758 2.45267 3.07055 3.56466 3.63140 3.75178 3.96291 3.97363 4.17879 4.22239 4.24597 4.31935 4.38561 4.68081 4.68641 4.76791 4.80311 4.96362 5.02902 5.05584 5.07190 5.20431 5.31570 5.45545 5.47827 5.61817 5.68135 5.76255 5.92404 6.06584 6.58413 6.71842 6.91756 7.28951 8.86082 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033169 B = 0.003661 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.968070 B = 7645.855453 C = 8345.424414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.065 0.935 9 C 0.033 3.967 10 C 0.093 3.907 11 O -0.364 6.364 12 C 0.525 3.475 13 O -0.554 6.554 14 C -0.267 4.267 15 C -0.178 4.178 16 C 0.008 3.992 17 N -0.523 5.523 18 H 0.437 0.563 19 C 0.137 3.863 20 C -0.077 4.077 21 C -0.127 4.127 22 C -0.129 4.129 23 C -0.129 4.129 24 H 0.269 0.731 25 H 0.005 0.995 26 H 0.005 0.995 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.144 0.856 30 H 0.219 0.781 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.841 -26.392 0.176 26.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.590 4.590 8 H 0.083 0.917 9 C -0.004 4.004 10 C 0.019 3.981 11 O -0.281 6.281 12 C 0.374 3.626 13 O -0.448 6.448 14 C -0.276 4.276 15 C -0.201 4.201 16 C -0.119 4.119 17 N -0.120 5.120 18 H 0.278 0.722 19 C 0.016 3.984 20 C -0.096 4.096 21 C -0.165 4.165 22 C -0.166 4.166 23 C -0.167 4.167 24 H 0.077 0.923 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.162 0.838 30 H 0.235 0.765 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.980 -26.370 0.175 26.669 hybrid contribution 0.250 1.233 0.002 1.259 sum 4.230 -25.136 0.177 25.490 Atomic orbital electron populations 1.70098 1.07888 1.28402 1.50252 1.26007 0.95886 1.03512 0.93940 0.85332 0.78166 0.77170 0.79359 1.18989 1.20277 1.18978 1.21350 0.93706 0.91207 1.52774 0.91682 1.18959 0.94281 0.90648 0.96511 1.23117 0.95090 0.79225 1.00650 1.86582 1.42146 1.15600 1.83756 1.20838 0.85051 0.85088 0.71622 1.90686 1.15866 1.88449 1.49792 1.19668 0.95409 0.88642 1.23843 1.22287 0.93362 0.96848 1.07581 1.22285 0.89545 0.92379 1.07651 1.41411 1.04767 1.09454 1.56398 0.72168 1.20364 0.91840 0.86791 0.99356 1.21687 0.87156 1.00274 1.00476 1.23023 0.99844 0.95560 0.98046 1.22778 0.97458 1.01593 0.94790 1.23011 0.99819 0.98172 0.95709 0.92266 0.97681 0.97675 0.92517 0.92497 0.83837 0.76461 0.88131 0.88195 0.91000 0.90050 0.88731 0.91966 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 2 C 0.01 0.32 5.46 84.65 0.46 0.78 16 3 Si 0.98 44.92 29.54 68.60 2.03 46.94 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.55 -32.91 9.11 25.60 0.23 -32.67 16 8 H 0.06 3.70 7.74 -2.91 -0.02 3.67 16 9 C 0.03 1.91 5.35 29.85 0.16 2.07 16 10 C 0.09 4.65 5.42 71.98 0.39 5.04 16 11 O -0.36 -17.24 10.12 -56.92 -0.58 -17.82 16 12 C 0.52 22.37 7.95 70.15 0.56 22.93 16 13 O -0.55 -24.94 14.47 19.69 0.28 -24.65 16 14 C -0.27 -8.95 6.33 -18.82 -0.12 -9.07 16 15 C -0.18 -4.87 11.00 23.62 0.26 -4.61 16 16 C 0.01 0.14 11.87 83.11 0.99 1.12 16 17 N -0.52 -7.91 5.71 -182.02 -1.04 -8.95 16 18 H 0.44 2.79 8.21 -92.71 -0.76 2.03 16 19 C 0.14 3.36 6.27 42.04 0.26 3.62 16 20 C -0.08 -1.70 3.94 -11.01 -0.04 -1.74 16 21 C -0.13 -1.78 7.62 31.12 0.24 -1.54 16 22 C -0.13 -1.59 8.08 31.12 0.25 -1.34 16 23 C -0.13 -2.13 7.63 31.12 0.24 -1.89 16 24 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 25 H 0.00 0.29 8.14 -2.39 -0.02 0.27 16 26 H 0.00 0.30 8.14 -2.38 -0.02 0.28 16 27 H 0.06 2.80 8.14 -2.39 -0.02 2.79 16 28 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 30 H 0.22 1.54 8.06 -2.91 -0.02 1.52 16 31 H 0.10 3.03 5.99 -2.39 -0.01 3.01 16 32 H 0.10 0.87 7.21 -2.38 -0.02 0.85 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.10 1.20 8.09 -2.38 -0.02 1.18 16 Total: -1.00 -76.45 317.26 5.17 -71.28 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.31 Total: 7.54 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 3.88 Total: -17.30 kcal Atomic # 7 Polarization: -65.24 SS G_CDS: -0.75 Total: -65.99 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -0.29 Total: -42.47 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -76.45 5.17 -71.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808691718.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.984 kcal (2) G-P(sol) polarization free energy of solvation -76.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds