Wall clock time and date at job start Mon Mar 30 2020 07:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35972 * 116.99607 * 2 1 4 4 C 1.38547 * 120.08650 * 359.97438 * 3 2 1 5 5 C 1.38241 * 120.01874 * 179.97438 * 4 3 2 6 6 C 1.38280 * 120.17731 * 0.05019 * 5 4 3 7 7 C 1.38191 * 120.16438 * 0.24784 * 6 5 4 8 8 C 1.50698 * 120.00829 * 179.70279 * 7 6 5 9 9 C 1.38726 * 119.98515 * 359.43453 * 7 6 5 10 10 N 1.40121 * 120.09144 * 180.29571 * 9 7 6 11 11 C 1.34771 * 119.99941 * 264.74128 * 10 9 7 12 12 O 1.21288 * 120.00057 * 5.03397 * 11 10 9 13 13 C 1.50703 * 119.99754 * 185.02713 * 11 10 9 14 14 H 1.08998 * 109.47325 * 300.00209 * 13 11 10 15 15 C 1.53006 * 109.46794 * 60.00708 * 13 11 10 16 16 C 1.50701 * 109.47000 * 180.02562 * 13 11 10 17 17 H 1.08000 * 119.99889 * 0.02562 * 16 13 11 18 18 C 1.37875 * 120.00109 * 180.02562 * 16 13 11 19 19 N 1.31513 * 120.00202 * 179.97438 * 18 16 13 20 20 Si 1.86796 * 119.99898 * 359.97438 * 18 16 13 21 21 H 1.48497 * 109.47229 * 90.00318 * 20 18 16 22 22 H 1.48500 * 109.46967 * 210.00044 * 20 18 16 23 23 H 1.48499 * 109.47156 * 330.00082 * 20 18 16 24 24 H 1.08996 * 109.47232 * 299.99763 * 1 2 3 25 25 H 1.08994 * 109.47347 * 60.00284 * 1 2 3 26 26 H 1.09011 * 109.46778 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.98960 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.91469 * 180.02562 * 5 4 3 29 29 H 1.08005 * 119.91430 * 179.97438 * 6 5 4 30 30 H 1.09008 * 109.47063 * 89.99877 * 8 7 6 31 31 H 1.09002 * 109.47735 * 209.99923 * 8 7 6 32 32 H 1.08999 * 109.47306 * 330.00811 * 8 7 6 33 33 H 0.97002 * 119.99799 * 84.74680 * 10 9 7 34 34 H 1.08991 * 109.47200 * 59.99695 * 15 13 11 35 35 H 1.09007 * 109.46412 * 179.97438 * 15 13 11 36 36 H 1.08994 * 109.47082 * 299.99119 * 15 13 11 37 37 H 0.97001 * 120.00547 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2933 2.3746 -0.0005 5 6 1.9223 3.6056 0.0000 6 6 3.3030 3.6807 0.0000 7 6 4.0613 2.5255 -0.0057 8 6 5.5658 2.6114 -0.0124 9 6 3.4372 1.2865 0.0005 10 7 4.2039 0.1137 0.0010 11 6 4.4786 -0.5123 -1.1605 12 8 4.1410 -0.0132 -2.2131 13 6 5.2053 -1.8325 -1.1513 14 1 6.1813 -1.7068 -0.6827 15 6 4.3891 -2.8585 -0.3625 16 6 5.3869 -2.3158 -2.5672 17 1 5.0138 -1.7257 -3.3912 18 6 6.0294 -3.5112 -2.8106 19 7 6.1874 -3.9331 -4.0461 20 14 6.6754 -4.5314 -1.3854 21 1 5.6213 -5.4752 -0.9345 22 1 7.8695 -5.2965 -1.8256 23 1 7.0488 -3.6335 -0.2631 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 0.2147 2.3194 -0.0014 28 1 1.3337 4.5112 0.0000 29 1 3.7900 4.6448 0.0000 30 1 5.9332 2.6302 1.0137 31 1 5.9771 1.7446 -0.5297 32 1 5.8754 3.5217 -0.5258 33 1 4.5369 -0.2477 0.8373 34 1 3.4131 -2.9842 -0.8312 35 1 4.9146 -3.8135 -0.3563 36 1 4.2582 -2.5089 0.6615 37 1 6.6397 -4.7740 -4.2174 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834536146.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:32 Heat of formation + Delta-G solvation = -43.237001 kcal Electronic energy + Delta-G solvation = -20182.598712 eV Core-core repulsion = 17118.643092 eV Total energy + Delta-G solvation = -3063.955620 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.45205 -38.62058 -37.41630 -34.15571 -33.75421 -31.97542 -31.18385 -29.21845 -27.44258 -26.42532 -25.07136 -23.48724 -21.76500 -21.00487 -19.46414 -17.79882 -16.95086 -16.66655 -16.31180 -15.76929 -15.42470 -14.85453 -14.38081 -14.24789 -13.71352 -13.59026 -13.47387 -13.04421 -12.56332 -12.25113 -12.20658 -12.11352 -11.82018 -11.63856 -11.54243 -11.01664 -10.91480 -10.90923 -10.56300 -10.25368 -9.59306 -9.05449 -8.87486 -8.69187 -8.54747 -8.46870 -8.02339 -6.00945 -4.00849 1.32749 1.51035 3.26848 3.33367 3.34219 3.39377 3.60125 3.73554 3.91066 4.41632 4.84732 4.89286 5.06206 5.16568 5.23997 5.28531 5.36595 5.44604 5.50035 5.66125 5.73004 5.77291 5.95917 6.18798 6.20253 6.33559 6.39591 6.43231 6.51613 6.60396 6.75565 6.78584 7.13886 7.23402 7.56525 7.61981 8.13665 8.59911 9.15421 9.21898 9.58209 11.12084 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025764 B = 0.006000 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.510401 B = 4665.181882 C = 5156.750479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.302 6.302 3 C 0.137 3.863 4 C -0.215 4.215 5 C -0.080 4.080 6 C -0.156 4.156 7 C -0.043 4.043 8 C -0.113 4.113 9 C 0.116 3.884 10 N -0.695 5.695 11 C 0.535 3.465 12 O -0.519 6.519 13 C -0.002 4.002 14 H 0.052 0.948 15 C -0.142 4.142 16 C -0.504 4.504 17 H 0.093 0.907 18 C 0.070 3.930 19 N -0.897 5.897 20 Si 0.885 3.115 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.267 1.267 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.099 0.901 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.401 0.599 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.034 0.966 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.189 12.221 13.795 20.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.215 6.215 3 C 0.090 3.910 4 C -0.234 4.234 5 C -0.098 4.098 6 C -0.175 4.175 7 C -0.045 4.045 8 C -0.170 4.170 9 C 0.023 3.977 10 N -0.348 5.348 11 C 0.324 3.676 12 O -0.392 6.392 13 C -0.024 4.024 14 H 0.069 0.931 15 C -0.199 4.199 16 C -0.542 4.542 17 H 0.111 0.889 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.715 3.285 21 H -0.206 1.206 22 H -0.224 1.224 23 H -0.192 1.192 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.117 0.883 27 H 0.145 0.855 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.237 0.763 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.276 12.186 12.852 19.549 hybrid contribution 0.087 -0.729 1.070 1.298 sum -8.189 11.456 13.922 19.802 Atomic orbital electron populations 1.23049 0.78857 1.03937 1.00903 1.86202 1.20857 1.26312 1.88083 1.19366 0.91707 0.84636 0.95337 1.21079 0.99791 0.92122 1.10389 1.20865 0.94515 0.96751 0.97700 1.20803 0.93596 0.97532 1.05559 1.19985 0.96600 0.91466 0.96403 1.20746 0.90585 1.03483 1.02184 1.16741 0.86690 0.87160 1.07060 1.43612 1.55568 1.25157 1.10457 1.21372 0.77840 0.86399 0.81973 1.90593 1.51303 1.66322 1.30940 1.19299 0.94824 0.88468 0.99786 0.93073 1.22080 1.01196 0.99185 0.97467 1.20941 1.37098 1.06050 0.90087 0.88919 1.24974 0.95529 0.97212 0.95428 1.69884 1.42975 1.21749 1.18898 0.86908 0.77919 0.80686 0.82991 1.20552 1.22373 1.19228 0.92976 0.92739 0.88273 0.85505 0.85892 0.85812 0.91036 0.90702 0.91334 0.76271 0.92315 0.93429 0.94737 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.31 16 2 O -0.30 -4.99 10.24 -19.65 -0.20 -5.19 16 3 C 0.14 2.24 6.70 -39.07 -0.26 1.97 16 4 C -0.21 -2.83 9.04 -39.47 -0.36 -3.19 16 5 C -0.08 -0.95 10.04 -39.56 -0.40 -1.35 16 6 C -0.16 -1.97 9.69 -39.58 -0.38 -2.35 16 7 C -0.04 -0.64 5.89 -104.46 -0.62 -1.26 16 8 C -0.11 -1.50 9.76 36.00 0.35 -1.14 16 9 C 0.12 1.99 5.28 -83.49 -0.44 1.55 16 10 N -0.69 -12.55 3.89 -9.75 -0.04 -12.59 16 11 C 0.53 12.30 6.78 -10.99 -0.07 12.23 16 12 O -0.52 -14.18 15.44 5.55 0.09 -14.09 16 13 C 0.00 -0.05 2.23 -92.92 -0.21 -0.26 16 14 H 0.05 1.17 7.20 -51.93 -0.37 0.80 16 15 C -0.14 -3.04 8.58 37.16 0.32 -2.72 16 16 C -0.50 -14.87 8.96 -34.44 -0.31 -15.18 16 17 H 0.09 3.13 7.00 -52.49 -0.37 2.76 16 18 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 19 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 20 Si 0.88 21.63 24.37 -169.99 -4.14 17.48 16 21 H -0.28 -6.61 6.87 56.52 0.39 -6.22 16 22 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.27 -6.05 6.53 56.52 0.37 -5.68 16 24 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 25 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 26 H 0.10 0.97 8.14 -51.92 -0.42 0.54 16 27 H 0.13 1.34 6.30 -52.49 -0.33 1.01 16 28 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 29 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 30 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 31 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16 32 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 33 H 0.40 6.03 8.41 -40.82 -0.34 5.69 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.05 1.05 3.27 -51.92 -0.17 0.88 16 36 H 0.03 0.59 7.68 -51.93 -0.40 0.20 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 305.91 15.07 4.61 4.61 Total: -1.00 -35.72 305.91 -5.26 -40.98 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -4.87 Total: 4.56 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -1.48 Total: -8.44 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.74 Total: -39.91 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.12 Total: -19.28 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.14 Total: 17.48 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.72 -5.26 -40.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834536146.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.257 kcal (2) G-P(sol) polarization free energy of solvation -35.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds