Wall clock time and date at job start Mon Mar 30 2020 07:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35972 * 116.99607 * 2 1 4 4 C 1.38547 * 120.08650 * 359.97438 * 3 2 1 5 5 C 1.38241 * 120.01874 * 179.97438 * 4 3 2 6 6 C 1.38280 * 120.17731 * 0.05019 * 5 4 3 7 7 C 1.38191 * 120.16438 * 0.24784 * 6 5 4 8 8 C 1.50698 * 120.00829 * 179.70279 * 7 6 5 9 9 C 1.38726 * 119.98515 * 359.43453 * 7 6 5 10 10 N 1.40121 * 120.09144 * 180.29571 * 9 7 6 11 11 C 1.34771 * 119.99941 * 264.74128 * 10 9 7 12 12 O 1.21288 * 120.00057 * 5.03397 * 11 10 9 13 13 C 1.50703 * 119.99754 * 185.02713 * 11 10 9 14 14 H 1.08998 * 109.47325 * 300.00209 * 13 11 10 15 15 C 1.53006 * 109.46794 * 60.00708 * 13 11 10 16 16 C 1.50701 * 109.47000 * 180.02562 * 13 11 10 17 17 H 1.08000 * 119.99889 * 0.02562 * 16 13 11 18 18 C 1.37875 * 120.00109 * 180.02562 * 16 13 11 19 19 N 1.31513 * 120.00202 * 179.97438 * 18 16 13 20 20 Si 1.86796 * 119.99898 * 359.97438 * 18 16 13 21 21 H 1.48497 * 109.47229 * 90.00318 * 20 18 16 22 22 H 1.48500 * 109.46967 * 210.00044 * 20 18 16 23 23 H 1.48499 * 109.47156 * 330.00082 * 20 18 16 24 24 H 1.08996 * 109.47232 * 299.99763 * 1 2 3 25 25 H 1.08994 * 109.47347 * 60.00284 * 1 2 3 26 26 H 1.09011 * 109.46778 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.98960 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.91469 * 180.02562 * 5 4 3 29 29 H 1.08005 * 119.91430 * 179.97438 * 6 5 4 30 30 H 1.09008 * 109.47063 * 89.99877 * 8 7 6 31 31 H 1.09002 * 109.47735 * 209.99923 * 8 7 6 32 32 H 1.08999 * 109.47306 * 330.00811 * 8 7 6 33 33 H 0.97002 * 119.99799 * 84.74680 * 10 9 7 34 34 H 1.08991 * 109.47200 * 59.99695 * 15 13 11 35 35 H 1.09007 * 109.46412 * 179.97438 * 15 13 11 36 36 H 1.08994 * 109.47082 * 299.99119 * 15 13 11 37 37 H 0.97001 * 120.00547 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2933 2.3746 -0.0005 5 6 1.9223 3.6056 0.0000 6 6 3.3030 3.6807 0.0000 7 6 4.0613 2.5255 -0.0057 8 6 5.5658 2.6114 -0.0124 9 6 3.4372 1.2865 0.0005 10 7 4.2039 0.1137 0.0010 11 6 4.4786 -0.5123 -1.1605 12 8 4.1410 -0.0132 -2.2131 13 6 5.2053 -1.8325 -1.1513 14 1 6.1813 -1.7068 -0.6827 15 6 4.3891 -2.8585 -0.3625 16 6 5.3869 -2.3158 -2.5672 17 1 5.0138 -1.7257 -3.3912 18 6 6.0294 -3.5112 -2.8106 19 7 6.1874 -3.9331 -4.0461 20 14 6.6754 -4.5314 -1.3854 21 1 5.6213 -5.4752 -0.9345 22 1 7.8695 -5.2965 -1.8256 23 1 7.0488 -3.6335 -0.2631 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 0.2147 2.3194 -0.0014 28 1 1.3337 4.5112 0.0000 29 1 3.7900 4.6448 0.0000 30 1 5.9332 2.6302 1.0137 31 1 5.9771 1.7446 -0.5297 32 1 5.8754 3.5217 -0.5258 33 1 4.5369 -0.2477 0.8373 34 1 3.4131 -2.9842 -0.8312 35 1 4.9146 -3.8135 -0.3563 36 1 4.2582 -2.5089 0.6615 37 1 6.6397 -4.7740 -4.2174 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834536146.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:31 Heat of formation + Delta-G solvation = -69.554692 kcal Electronic energy + Delta-G solvation = -20183.739933 eV Core-core repulsion = 17118.643092 eV Total energy + Delta-G solvation = -3065.096840 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.68757 -40.16410 -38.55809 -35.80459 -35.61194 -33.42546 -32.89823 -30.41275 -28.39707 -27.48709 -27.11751 -25.14836 -23.06090 -22.12459 -21.16476 -19.04235 -18.74988 -18.19226 -17.45952 -17.41269 -16.70566 -16.52428 -15.82824 -15.54201 -15.11809 -14.95534 -14.62511 -14.50810 -14.33406 -14.05475 -13.48062 -13.18649 -13.06714 -12.86322 -12.80308 -12.60671 -12.53404 -12.18671 -11.98943 -11.86670 -11.46569 -11.24048 -10.78848 -10.57191 -10.26215 -9.62547 -9.11458 -8.27098 -6.35082 0.25667 0.45504 1.33412 1.39817 1.51300 1.84237 2.28267 2.34511 2.43037 2.77952 3.06221 3.86079 3.96305 4.05962 4.21238 4.35453 4.35635 4.38856 4.41163 4.44037 4.60126 4.65454 4.68153 4.75734 4.80105 4.84352 4.98543 5.18733 5.29374 5.42241 5.44397 5.51213 5.54211 5.70524 5.91106 6.25561 6.48269 6.63810 6.82543 7.26187 7.52813 8.90761 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025764 B = 0.006000 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.510401 B = 4665.181882 C = 5156.750479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.115 3.885 4 C -0.217 4.217 5 C -0.071 4.071 6 C -0.157 4.157 7 C -0.056 4.056 8 C -0.111 4.111 9 C 0.070 3.930 10 N -0.669 5.669 11 C 0.537 3.463 12 O -0.577 6.577 13 C -0.005 4.005 14 H 0.072 0.928 15 C -0.135 4.135 16 C -0.520 4.520 17 H 0.027 0.973 18 C 0.007 3.993 19 N -0.953 5.953 20 Si 0.960 3.040 21 H -0.261 1.261 22 H -0.297 1.297 23 H -0.229 1.229 24 H 0.079 0.921 25 H 0.056 0.944 26 H 0.109 0.891 27 H 0.153 0.847 28 H 0.163 0.837 29 H 0.155 0.845 30 H 0.097 0.903 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.416 0.584 34 H 0.041 0.959 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.686 13.396 17.411 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.068 3.932 4 C -0.236 4.236 5 C -0.089 4.089 6 C -0.176 4.176 7 C -0.058 4.058 8 C -0.168 4.168 9 C -0.022 4.022 10 N -0.321 5.321 11 C 0.327 3.673 12 O -0.455 6.455 13 C -0.027 4.027 14 H 0.090 0.910 15 C -0.192 4.192 16 C -0.559 4.559 17 H 0.045 0.955 18 C -0.190 4.190 19 N -0.593 5.593 20 Si 0.785 3.215 21 H -0.187 1.187 22 H -0.225 1.225 23 H -0.152 1.152 24 H 0.097 0.903 25 H 0.075 0.925 26 H 0.127 0.873 27 H 0.170 0.830 28 H 0.180 0.820 29 H 0.172 0.828 30 H 0.115 0.885 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.254 0.746 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.795 13.395 16.541 23.030 hybrid contribution 0.138 -0.940 -0.129 0.959 sum -8.657 12.455 16.412 22.348 Atomic orbital electron populations 1.23319 0.76649 1.05199 1.02292 1.86131 1.23369 1.27103 1.88371 1.19630 0.91761 0.85635 0.96221 1.21445 1.01085 0.91620 1.09461 1.21378 0.94641 0.97682 0.95185 1.21205 0.94117 0.97927 1.04301 1.20273 0.97566 0.91545 0.96410 1.20764 0.89772 1.02694 1.03537 1.17141 0.87417 0.87199 1.10456 1.43128 1.54415 1.25158 1.09353 1.21164 0.77382 0.86203 0.82552 1.90564 1.53931 1.67676 1.33280 1.19246 0.96561 0.89952 0.96900 0.91049 1.21967 0.99590 0.98212 0.99412 1.21057 1.37265 1.05966 0.91584 0.95478 1.26033 0.95451 0.98484 0.98984 1.70077 1.44371 1.22652 1.22156 0.85698 0.77310 0.79052 0.79485 1.18705 1.22498 1.15242 0.90279 0.92502 0.87258 0.82962 0.81992 0.82765 0.88471 0.94002 0.89747 0.74571 0.93981 0.93373 0.89995 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 16 2 O -0.34 -10.99 10.24 -93.23 -0.95 -11.94 16 3 C 0.11 3.65 6.70 22.60 0.15 3.80 16 4 C -0.22 -5.22 9.04 22.34 0.20 -5.01 16 5 C -0.07 -1.44 10.04 22.28 0.22 -1.21 16 6 C -0.16 -3.50 9.69 22.27 0.22 -3.28 16 7 C -0.06 -1.61 5.89 -19.76 -0.12 -1.73 16 8 C -0.11 -2.80 9.76 71.24 0.70 -2.10 16 9 C 0.07 2.37 5.28 38.19 0.20 2.57 16 10 N -0.67 -24.02 3.89 -303.14 -1.18 -25.20 16 11 C 0.54 25.42 6.78 87.66 0.59 26.01 16 12 O -0.58 -33.50 15.44 -3.05 -0.05 -33.55 16 13 C 0.00 -0.24 2.23 -12.28 -0.03 -0.27 16 14 H 0.07 3.15 7.20 -2.39 -0.02 3.14 16 15 C -0.13 -5.50 8.58 71.98 0.62 -4.88 16 16 C -0.52 -32.25 8.96 25.60 0.23 -32.02 16 17 H 0.03 1.98 7.00 -2.91 -0.02 1.96 16 18 C 0.01 0.41 5.45 84.65 0.46 0.87 16 19 N -0.95 -62.37 13.96 21.45 0.30 -62.07 16 20 Si 0.96 44.02 24.37 68.60 1.67 45.69 16 21 H -0.26 -11.24 6.87 99.48 0.68 -10.56 16 22 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.23 -9.09 6.53 99.48 0.65 -8.44 16 24 H 0.08 1.21 7.66 -2.39 -0.02 1.20 16 25 H 0.06 1.15 7.66 -2.39 -0.02 1.13 16 26 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.15 2.74 6.30 -2.91 -0.02 2.72 16 28 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 29 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 30 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.04 1.32 7.18 -2.39 -0.02 1.31 16 32 H 0.08 1.80 8.09 -2.39 -0.02 1.79 16 33 H 0.42 11.88 8.41 -92.71 -0.78 11.10 16 34 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.96 3.27 -2.38 -0.01 1.95 16 36 H 0.08 2.55 7.68 -2.39 -0.02 2.53 16 37 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 Total: -1.00 -85.03 305.91 4.58 -80.45 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.23 Total: 22.34 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 4.56 Total: -15.72 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -0.88 Total: -87.27 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -1.00 Total: -45.49 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.67 Total: 45.69 kcal Total: -85.03 4.58 -80.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834536146.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.899 kcal (2) G-P(sol) polarization free energy of solvation -85.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds