Wall clock time and date at job start Mon Mar 30 2020 07:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35975 * 117.00107 * 2 1 4 4 C 1.38547 * 120.08320 * 359.97438 * 3 2 1 5 5 C 1.38241 * 120.01783 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.17466 * 359.97438 * 5 4 3 7 7 C 1.38192 * 120.16653 * 359.72513 * 6 5 4 8 8 C 1.50701 * 120.01030 * 180.27327 * 7 6 5 9 9 C 1.38728 * 119.98328 * 0.55571 * 7 6 5 10 10 N 1.40119 * 120.08843 * 179.72220 * 9 7 6 11 11 C 1.34778 * 120.00327 * 95.27000 * 10 9 7 12 12 O 1.21302 * 119.99739 * 354.96900 * 11 10 9 13 13 C 1.50694 * 120.00303 * 174.96941 * 11 10 9 14 14 H 1.08993 * 109.47393 * 59.99689 * 13 11 10 15 15 C 1.53003 * 109.47169 * 299.99895 * 13 11 10 16 16 C 1.50700 * 109.47119 * 180.02562 * 13 11 10 17 17 H 1.07998 * 120.00033 * 359.97438 * 16 13 11 18 18 C 1.37884 * 119.99987 * 180.02562 * 16 13 11 19 19 N 1.31513 * 119.99496 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 120.00091 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.47283 * 89.99405 * 20 18 16 22 22 H 1.48496 * 109.47235 * 209.99657 * 20 18 16 23 23 H 1.48505 * 109.47080 * 329.99676 * 20 18 16 24 24 H 1.08996 * 109.47102 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46625 * 299.99944 * 1 2 3 26 26 H 1.08994 * 109.46738 * 59.99921 * 1 2 3 27 27 H 1.07998 * 119.99248 * 359.97438 * 4 3 2 28 28 H 1.07997 * 119.91483 * 180.02562 * 5 4 3 29 29 H 1.08006 * 119.91292 * 180.02562 * 6 5 4 30 30 H 1.08995 * 109.47415 * 270.27924 * 8 7 6 31 31 H 1.09000 * 109.46679 * 30.28029 * 8 7 6 32 32 H 1.09000 * 109.47111 * 150.27357 * 8 7 6 33 33 H 0.97006 * 120.00140 * 275.26710 * 10 9 7 34 34 H 1.09006 * 109.47117 * 300.00253 * 15 13 11 35 35 H 1.08996 * 109.47401 * 180.02562 * 15 13 11 36 36 H 1.09002 * 109.47041 * 59.99568 * 15 13 11 37 37 H 0.97005 * 119.99400 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2935 2.3746 -0.0005 5 6 1.9225 3.6056 -0.0011 6 6 3.3033 3.6806 -0.0005 7 6 4.0615 2.5252 0.0063 8 6 5.5661 2.6111 0.0130 9 6 3.4373 1.2863 0.0009 10 7 4.2040 0.1135 0.0019 11 6 4.4778 -0.5117 1.1641 12 8 4.1394 -0.0116 2.2162 13 6 5.2044 -1.8319 1.1566 14 1 6.1808 -1.7066 0.6886 15 6 4.3888 -2.8585 0.3680 16 6 5.3838 -2.3146 2.5729 17 1 5.0095 -1.7242 3.3961 18 6 6.0268 -3.5095 2.8178 19 7 6.4830 -4.2281 1.8153 20 14 6.2499 -4.1075 4.5733 21 1 5.0841 -4.9401 4.9646 22 1 7.4906 -4.9181 4.6663 23 1 6.3522 -2.9396 5.4849 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8899 27 1 0.2149 2.3195 -0.0014 28 1 1.3340 4.5111 -0.0011 29 1 3.7904 4.6446 -0.0005 30 1 5.9333 2.6339 -1.0129 31 1 5.8758 3.5193 0.5301 32 1 5.9772 1.7422 0.5270 33 1 4.5377 -0.2486 -0.8339 34 1 3.4124 -2.9838 0.8360 35 1 4.9141 -3.8135 0.3629 36 1 4.2586 -2.5095 -0.6564 37 1 6.9350 -5.0690 1.9875 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834536147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:34 Heat of formation + Delta-G solvation = -53.064229 kcal Electronic energy + Delta-G solvation = -20123.281388 eV Core-core repulsion = 17058.899628 eV Total energy + Delta-G solvation = -3064.381760 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.36889 -38.47606 -37.33706 -34.05586 -33.65150 -31.90126 -30.55479 -28.99017 -27.39168 -26.34060 -25.06575 -23.21108 -21.68790 -20.94692 -19.38433 -17.73847 -16.91663 -16.28925 -16.01541 -15.74658 -15.41604 -14.58330 -14.35566 -14.13167 -13.67185 -13.43165 -13.38383 -12.85945 -12.35845 -12.16498 -12.06532 -11.76140 -11.60489 -11.41864 -10.99813 -10.93533 -10.85901 -10.66179 -10.60801 -10.19665 -9.91848 -8.92524 -8.76323 -8.57594 -8.43747 -8.26545 -7.95430 -5.98352 -4.00969 1.38642 1.56439 3.36936 3.39852 3.42318 3.49579 3.73597 3.84029 4.02897 4.51710 4.89424 4.94639 5.10717 5.20491 5.29507 5.34797 5.41597 5.50003 5.53980 5.74064 5.79194 5.85375 6.23766 6.29443 6.40420 6.48427 6.65560 6.71972 6.83796 6.93416 7.01273 7.23858 7.54256 7.67925 7.81980 8.04280 8.19927 8.49520 9.07934 9.33641 9.64287 11.09249 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025039 B = 0.005698 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.965188 B = 4912.467480 C = 5372.777250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.301 6.301 3 C 0.136 3.864 4 C -0.215 4.215 5 C -0.082 4.082 6 C -0.157 4.157 7 C -0.044 4.044 8 C -0.113 4.113 9 C 0.118 3.882 10 N -0.695 5.695 11 C 0.527 3.473 12 O -0.535 6.535 13 C 0.032 3.968 14 H 0.052 0.948 15 C -0.129 4.129 16 C -0.498 4.498 17 H 0.073 0.927 18 C 0.058 3.942 19 N -0.897 5.897 20 Si 0.899 3.101 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 H 0.099 0.901 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.402 0.598 34 H 0.031 0.969 35 H 0.092 0.908 36 H 0.013 0.987 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.400 12.234 -8.482 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.213 6.213 3 C 0.088 3.912 4 C -0.234 4.234 5 C -0.100 4.100 6 C -0.175 4.175 7 C -0.046 4.046 8 C -0.169 4.169 9 C 0.026 3.974 10 N -0.347 5.347 11 C 0.318 3.682 12 O -0.409 6.409 13 C 0.011 3.989 14 H 0.070 0.930 15 C -0.187 4.187 16 C -0.537 4.537 17 H 0.091 0.909 18 C -0.142 4.142 19 N -0.536 5.536 20 Si 0.727 3.273 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 H 0.117 0.883 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.144 0.856 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.238 0.762 34 H 0.050 0.950 35 H 0.110 0.890 36 H 0.032 0.968 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.458 12.173 -7.702 16.705 hybrid contribution -0.156 -0.389 0.487 0.642 sum -8.614 11.784 -7.216 16.283 Atomic orbital electron populations 1.23039 0.78977 1.03891 1.00818 1.86223 1.20745 1.26285 1.88067 1.19389 0.91775 0.84607 0.95396 1.21071 0.99734 0.92147 1.10488 1.20847 0.94505 0.96707 0.97962 1.20795 0.93592 0.97505 1.05646 1.19994 0.96593 0.91489 0.96526 1.20737 0.90611 1.03393 1.02200 1.16796 0.86754 0.87369 1.06520 1.43699 1.55390 1.24934 1.10708 1.22093 0.77566 0.86880 0.81702 1.90544 1.52341 1.66822 1.31223 1.18861 0.94675 0.86383 0.98989 0.93041 1.21708 0.99272 1.02906 0.94845 1.21147 1.36109 1.05159 0.91283 0.90855 1.24941 0.95412 0.96517 0.97376 1.69880 1.39276 1.14200 1.30283 0.86464 0.77344 0.78688 0.84785 1.20712 1.21309 1.19777 0.88301 0.92847 0.92999 0.85578 0.85967 0.85887 0.91025 0.91450 0.90682 0.76158 0.94975 0.88971 0.96843 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.30 -5.21 10.24 -19.66 -0.20 -5.42 16 3 C 0.14 2.31 6.70 -39.07 -0.26 2.05 16 4 C -0.22 -2.96 9.04 -39.47 -0.36 -3.32 16 5 C -0.08 -1.02 10.04 -39.56 -0.40 -1.41 16 6 C -0.16 -2.06 9.69 -39.58 -0.38 -2.44 16 7 C -0.04 -0.69 5.89 -104.46 -0.62 -1.31 16 8 C -0.11 -1.56 9.76 36.01 0.35 -1.21 16 9 C 0.12 2.13 5.28 -83.49 -0.44 1.69 16 10 N -0.69 -13.34 3.89 -9.75 -0.04 -13.38 16 11 C 0.53 12.62 6.78 -10.99 -0.07 12.55 16 12 O -0.54 -14.78 15.44 5.54 0.09 -14.70 16 13 C 0.03 0.82 2.64 -92.92 -0.24 0.58 16 14 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 15 C -0.13 -3.09 8.87 37.16 0.33 -2.76 16 16 C -0.50 -14.47 8.37 -34.44 -0.29 -14.76 16 17 H 0.07 2.26 6.75 -52.49 -0.35 1.90 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 19 N -0.90 -25.48 11.32 55.43 0.63 -24.85 16 20 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 24 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.05 0.59 7.67 -51.93 -0.40 0.19 16 26 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 27 H 0.13 1.39 6.30 -52.49 -0.33 1.06 16 28 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 32 H 0.07 1.24 7.18 -51.93 -0.37 0.87 16 33 H 0.40 6.70 8.41 -40.82 -0.34 6.35 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 36 H 0.01 0.26 7.68 -51.93 -0.40 -0.14 16 37 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 312.73 15.07 4.71 4.71 Total: -1.00 -33.65 312.73 -6.32 -39.97 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.00 Total: 3.97 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -1.49 Total: -7.47 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.59 Total: -38.24 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.12 Total: -20.11 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.65 -6.32 -39.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834536147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.094 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds