Wall clock time and date at job start Mon Mar 30 2020 07:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35975 * 117.00107 * 2 1 4 4 C 1.38547 * 120.08320 * 359.97438 * 3 2 1 5 5 C 1.38241 * 120.01783 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.17466 * 359.97438 * 5 4 3 7 7 C 1.38192 * 120.16653 * 359.72513 * 6 5 4 8 8 C 1.50701 * 120.01030 * 180.27327 * 7 6 5 9 9 C 1.38728 * 119.98328 * 0.55571 * 7 6 5 10 10 N 1.40119 * 120.08843 * 179.72220 * 9 7 6 11 11 C 1.34778 * 120.00327 * 95.27000 * 10 9 7 12 12 O 1.21302 * 119.99739 * 354.96900 * 11 10 9 13 13 C 1.50694 * 120.00303 * 174.96941 * 11 10 9 14 14 H 1.08993 * 109.47393 * 59.99689 * 13 11 10 15 15 C 1.53003 * 109.47169 * 299.99895 * 13 11 10 16 16 C 1.50700 * 109.47119 * 180.02562 * 13 11 10 17 17 H 1.07998 * 120.00033 * 359.97438 * 16 13 11 18 18 C 1.37884 * 119.99987 * 180.02562 * 16 13 11 19 19 N 1.31513 * 119.99496 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 120.00091 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.47283 * 89.99405 * 20 18 16 22 22 H 1.48496 * 109.47235 * 209.99657 * 20 18 16 23 23 H 1.48505 * 109.47080 * 329.99676 * 20 18 16 24 24 H 1.08996 * 109.47102 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46625 * 299.99944 * 1 2 3 26 26 H 1.08994 * 109.46738 * 59.99921 * 1 2 3 27 27 H 1.07998 * 119.99248 * 359.97438 * 4 3 2 28 28 H 1.07997 * 119.91483 * 180.02562 * 5 4 3 29 29 H 1.08006 * 119.91292 * 180.02562 * 6 5 4 30 30 H 1.08995 * 109.47415 * 270.27924 * 8 7 6 31 31 H 1.09000 * 109.46679 * 30.28029 * 8 7 6 32 32 H 1.09000 * 109.47111 * 150.27357 * 8 7 6 33 33 H 0.97006 * 120.00140 * 275.26710 * 10 9 7 34 34 H 1.09006 * 109.47117 * 300.00253 * 15 13 11 35 35 H 1.08996 * 109.47401 * 180.02562 * 15 13 11 36 36 H 1.09002 * 109.47041 * 59.99568 * 15 13 11 37 37 H 0.97005 * 119.99400 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2935 2.3746 -0.0005 5 6 1.9225 3.6056 -0.0011 6 6 3.3033 3.6806 -0.0005 7 6 4.0615 2.5252 0.0063 8 6 5.5661 2.6111 0.0130 9 6 3.4373 1.2863 0.0009 10 7 4.2040 0.1135 0.0019 11 6 4.4778 -0.5117 1.1641 12 8 4.1394 -0.0116 2.2162 13 6 5.2044 -1.8319 1.1566 14 1 6.1808 -1.7066 0.6886 15 6 4.3888 -2.8585 0.3680 16 6 5.3838 -2.3146 2.5729 17 1 5.0095 -1.7242 3.3961 18 6 6.0268 -3.5095 2.8178 19 7 6.4830 -4.2281 1.8153 20 14 6.2499 -4.1075 4.5733 21 1 5.0841 -4.9401 4.9646 22 1 7.4906 -4.9181 4.6663 23 1 6.3522 -2.9396 5.4849 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8899 27 1 0.2149 2.3195 -0.0014 28 1 1.3340 4.5111 -0.0011 29 1 3.7904 4.6446 -0.0005 30 1 5.9333 2.6339 -1.0129 31 1 5.8758 3.5193 0.5301 32 1 5.9772 1.7422 0.5270 33 1 4.5377 -0.2486 -0.8339 34 1 3.4124 -2.9838 0.8360 35 1 4.9141 -3.8135 0.3629 36 1 4.2586 -2.5095 -0.6564 37 1 6.9350 -5.0690 1.9875 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834536147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:33 Heat of formation + Delta-G solvation = -75.029309 kcal Electronic energy + Delta-G solvation = -20124.233866 eV Core-core repulsion = 17058.899628 eV Total energy + Delta-G solvation = -3065.334238 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.64928 -40.08866 -38.54231 -35.78822 -35.55001 -33.11743 -32.47220 -30.28936 -28.39382 -27.46269 -27.19385 -24.91288 -23.05977 -22.12262 -21.14217 -19.02372 -18.39350 -18.03809 -17.45626 -17.40376 -16.63075 -16.41347 -15.77491 -15.51107 -15.06035 -14.75075 -14.59056 -14.49674 -14.26018 -13.51262 -13.18672 -13.06097 -12.97626 -12.81438 -12.72642 -12.59553 -12.57879 -12.23379 -12.06312 -11.96203 -11.86386 -11.06308 -10.64665 -10.40205 -10.20392 -9.61620 -9.10783 -8.15347 -6.25835 0.26719 0.46087 1.39933 1.40250 1.52653 1.91469 2.29981 2.40582 2.53643 2.78723 3.13752 3.87007 3.97690 4.13608 4.29900 4.35490 4.37923 4.42915 4.44881 4.66819 4.70632 4.73364 4.77166 4.84221 4.95305 5.00836 5.18421 5.30149 5.43420 5.48604 5.54968 5.69978 5.75234 5.88178 5.96673 6.19311 6.50239 6.69168 6.83775 7.39515 7.57390 8.90646 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025039 B = 0.005698 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.965188 B = 4912.467480 C = 5372.777250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.338 6.338 3 C 0.113 3.887 4 C -0.216 4.216 5 C -0.071 4.071 6 C -0.156 4.156 7 C -0.058 4.058 8 C -0.110 4.110 9 C 0.070 3.930 10 N -0.672 5.672 11 C 0.532 3.468 12 O -0.581 6.581 13 C 0.028 3.972 14 H 0.043 0.957 15 C -0.113 4.113 16 C -0.528 4.528 17 H 0.046 0.954 18 C 0.020 3.980 19 N -0.910 5.910 20 Si 0.956 3.044 21 H -0.274 1.274 22 H -0.272 1.272 23 H -0.279 1.279 24 H 0.108 0.892 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.154 0.846 28 H 0.164 0.836 29 H 0.156 0.844 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.039 0.961 33 H 0.411 0.589 34 H 0.018 0.982 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.409 13.923 -9.225 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.252 6.252 3 C 0.066 3.934 4 C -0.235 4.235 5 C -0.089 4.089 6 C -0.174 4.174 7 C -0.059 4.059 8 C -0.167 4.167 9 C -0.022 4.022 10 N -0.323 5.323 11 C 0.323 3.677 12 O -0.459 6.459 13 C 0.007 3.993 14 H 0.061 0.939 15 C -0.171 4.171 16 C -0.567 4.567 17 H 0.064 0.936 18 C -0.179 4.179 19 N -0.549 5.549 20 Si 0.782 3.218 21 H -0.200 1.200 22 H -0.197 1.197 23 H -0.205 1.205 24 H 0.126 0.874 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.171 0.829 28 H 0.182 0.818 29 H 0.173 0.827 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.249 0.751 34 H 0.037 0.963 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.474 13.867 -8.509 18.827 hybrid contribution 0.101 -0.827 0.647 1.055 sum -9.373 13.040 -7.862 17.881 Atomic orbital electron populations 1.23317 0.76638 1.05138 1.02345 1.86152 1.23411 1.27204 1.88389 1.19650 0.91749 0.85650 0.96341 1.21444 1.01071 0.91549 1.09420 1.21380 0.94593 0.97666 0.95246 1.21204 0.94131 0.97839 1.04252 1.20272 0.97501 0.91565 0.96588 1.20749 0.89895 1.02644 1.03402 1.17211 0.87520 0.87260 1.10212 1.43229 1.54410 1.25183 1.09494 1.21648 0.77201 0.86453 0.82402 1.90501 1.54497 1.67862 1.33039 1.18787 0.94840 0.88052 0.97626 0.93906 1.21499 0.97728 1.01511 0.96398 1.21244 1.37365 1.05822 0.92257 0.93609 1.25598 0.94831 0.96329 1.01126 1.69951 1.38947 1.14338 1.31686 0.85585 0.77980 0.78005 0.80245 1.19981 1.19653 1.20470 0.87396 0.92247 0.90361 0.82876 0.81845 0.82669 0.88776 0.89511 0.94211 0.75071 0.96305 0.90859 0.93457 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.56 16 2 O -0.34 -11.71 10.24 -93.27 -0.96 -12.67 16 3 C 0.11 3.78 6.70 22.60 0.15 3.94 16 4 C -0.22 -5.38 9.04 22.34 0.20 -5.18 16 5 C -0.07 -1.48 10.04 22.28 0.22 -1.26 16 6 C -0.16 -3.60 9.69 22.27 0.22 -3.39 16 7 C -0.06 -1.74 5.89 -19.76 -0.12 -1.86 16 8 C -0.11 -2.98 9.76 71.24 0.70 -2.28 16 9 C 0.07 2.52 5.28 38.19 0.20 2.72 16 10 N -0.67 -26.51 3.89 -303.13 -1.18 -27.69 16 11 C 0.53 26.56 6.78 87.66 0.59 27.15 16 12 O -0.58 -33.61 15.44 -3.10 -0.05 -33.66 16 13 C 0.03 1.50 2.64 -12.29 -0.03 1.46 16 14 H 0.04 2.32 8.14 -2.39 -0.02 2.30 16 15 C -0.11 -5.52 8.87 71.98 0.64 -4.88 16 16 C -0.53 -31.84 8.37 25.60 0.21 -31.63 16 17 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 18 C 0.02 1.17 5.30 84.66 0.45 1.62 16 19 N -0.91 -52.14 11.32 21.45 0.24 -51.89 16 20 Si 0.96 46.04 29.54 68.60 2.03 48.06 16 21 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 24 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.06 1.23 7.67 -2.39 -0.02 1.21 16 26 H 0.08 1.30 7.66 -2.39 -0.02 1.28 16 27 H 0.15 2.85 6.30 -2.91 -0.02 2.83 16 28 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 29 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.09 1.95 8.09 -2.39 -0.02 1.93 16 32 H 0.04 1.34 7.18 -2.39 -0.02 1.33 16 33 H 0.41 14.00 8.41 -92.70 -0.78 13.22 16 34 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 36 H 0.05 1.92 7.68 -2.39 -0.02 1.90 16 37 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -75.59 312.73 4.94 -70.65 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.30 Total: 19.22 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 4.55 Total: -12.02 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -0.93 Total: -79.58 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -1.00 Total: -46.33 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -75.59 4.94 -70.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834536147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.383 kcal (2) G-P(sol) polarization free energy of solvation -75.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds