Wall clock time and date at job start Mon Mar 30 2020 07:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00045 * 2 1 4 4 H 1.48497 * 109.47009 * 239.99914 * 3 2 1 5 5 H 1.48499 * 109.47290 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47071 * 120.00220 * 3 2 1 7 7 C 1.37876 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47556 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47491 * 180.02562 * 10 9 7 12 12 O 1.45196 * 109.47628 * 179.97438 * 11 10 9 13 13 C 1.34895 * 117.00631 * 179.97438 * 12 11 10 14 14 O 1.21620 * 119.99347 * 359.97438 * 13 12 11 15 15 C 1.46487 * 120.00011 * 180.02562 * 13 12 11 16 16 N 1.37698 * 126.26826 * 0.02562 * 15 13 12 17 17 H 0.97005 * 125.63367 * 0.04007 * 16 15 13 18 18 C 1.34953 * 108.73259 * 180.02562 * 16 15 13 19 19 C 1.35485 * 108.98568 * 359.97438 * 18 16 15 20 20 C 1.38003 * 126.26098 * 180.02562 * 15 13 12 21 21 C 1.50702 * 126.51371 * 359.97438 * 20 15 13 22 22 C 1.53000 * 117.49567 * 188.77197 * 21 20 15 23 23 C 1.52998 * 117.49599 * 120.11035 * 21 20 15 24 24 H 0.96998 * 119.99609 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47520 * 59.99280 * 9 7 2 26 26 H 1.09007 * 109.46630 * 299.99680 * 9 7 2 27 27 H 1.08997 * 109.47413 * 59.99591 * 10 9 7 28 28 H 1.09007 * 109.46838 * 299.99490 * 10 9 7 29 29 H 1.09002 * 109.47565 * 59.99230 * 11 10 9 30 30 H 1.08999 * 109.46797 * 299.99872 * 11 10 9 31 31 H 1.08001 * 125.51306 * 179.97438 * 18 16 15 32 32 H 1.08001 * 126.08073 * 179.73240 * 19 18 16 33 33 H 1.08996 * 115.55093 * 334.44409 * 21 20 15 34 34 H 1.09000 * 117.50117 * 359.97438 * 22 21 20 35 35 H 1.09003 * 117.49699 * 145.02639 * 22 21 20 36 36 H 1.08994 * 117.50075 * 214.97807 * 23 21 20 37 37 H 1.08999 * 117.49960 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9871 -0.0033 12 8 2.4237 -6.0907 -0.0037 13 6 1.9081 -7.3373 -0.0047 14 8 0.7024 -7.4965 -0.0048 15 6 2.8005 -8.4990 -0.0046 16 7 4.1771 -8.4686 -0.0029 17 1 4.7248 -7.6680 -0.0011 18 6 4.6386 -9.7368 -0.0040 19 6 3.5854 -10.5891 -0.0056 20 6 2.4153 -9.8241 -0.0060 21 6 1.0019 -10.3471 -0.0075 22 6 0.8048 -11.8504 0.1980 23 6 0.5766 -11.2297 -1.1826 24 1 -0.4849 0.8401 0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 2.8712 -3.6048 0.8890 28 1 2.8725 -3.6040 -0.8910 29 1 0.8544 -5.0442 -0.8939 30 1 0.8526 -5.0454 0.8860 31 1 5.6792 -10.0258 -0.0035 32 1 3.6400 -11.6677 -0.0108 33 1 0.2528 -9.6786 0.4167 34 1 1.6973 -12.4611 0.3338 35 1 -0.0744 -12.1709 0.7571 36 1 -0.4524 -11.1422 -1.5312 37 1 1.3191 -11.4325 -1.9544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838461839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:23 Heat of formation + Delta-G solvation = -36.313067 kcal Electronic energy + Delta-G solvation = -18712.280497 eV Core-core repulsion = 15648.625121 eV Total energy + Delta-G solvation = -3063.655375 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.60595 -39.65936 -37.16452 -36.30312 -34.00439 -31.77098 -30.96547 -29.80223 -27.10415 -24.31373 -23.03021 -22.51131 -22.13074 -20.91275 -20.40819 -18.98823 -18.47854 -16.85975 -16.33301 -16.19304 -15.68213 -15.31442 -14.64102 -14.49682 -14.29151 -13.70381 -13.34262 -13.17672 -12.86314 -12.20626 -12.12040 -11.90410 -11.70598 -11.59449 -10.97750 -10.94980 -10.79215 -10.67308 -10.61605 -10.40425 -10.19252 -9.75368 -9.53362 -9.20101 -8.90647 -8.40493 -8.37259 -6.05286 -4.08702 1.16967 2.45516 2.76411 3.07104 3.07540 3.30643 3.35207 3.37540 3.94243 4.41579 4.52339 4.77043 4.83570 4.97102 5.02436 5.22321 5.30505 5.31931 5.53429 5.55986 5.60319 5.62916 5.78176 5.92076 5.99487 6.03427 6.23868 6.40753 6.50239 6.50793 6.73180 6.81280 6.94576 7.20232 7.57633 7.68875 7.92082 7.94098 8.33494 8.97205 9.55584 11.06121 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040147 B = 0.003143 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.264595 B = 8907.319392 C = 9509.300737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.071 3.929 12 O -0.365 6.365 13 C 0.530 3.470 14 O -0.499 6.499 15 C -0.035 4.035 16 N -0.524 5.524 17 H 0.427 0.573 18 C 0.033 3.967 19 C -0.214 4.214 20 C -0.036 4.036 21 C -0.092 4.092 22 C -0.175 4.175 23 C -0.168 4.168 24 H 0.262 0.738 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.174 0.826 32 H 0.144 0.856 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.693 -22.930 -0.304 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.002 4.002 12 O -0.282 6.282 13 C 0.375 3.625 14 O -0.387 6.387 15 C -0.146 4.146 16 N -0.118 5.118 17 H 0.265 0.735 18 C -0.105 4.105 19 C -0.239 4.239 20 C -0.044 4.044 21 C -0.110 4.110 22 C -0.212 4.212 23 C -0.205 4.205 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.191 0.809 32 H 0.162 0.838 33 H 0.143 0.857 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.216 -22.613 -0.304 23.738 hybrid contribution 0.645 1.378 -0.001 1.522 sum 7.861 -21.234 -0.306 22.645 Atomic orbital electron populations 1.69954 1.06085 1.26915 1.50334 1.25028 0.94885 0.99354 0.95157 0.86603 0.79540 0.82893 0.78647 1.20184 1.21216 1.20189 1.21126 0.93051 0.90705 1.51281 0.92526 1.19046 0.93823 0.90658 0.97751 1.21770 0.99979 0.91048 1.01828 1.23514 0.91118 0.83165 1.02359 1.86545 1.42771 1.15023 1.83877 1.19760 0.86615 0.82526 0.73638 1.90859 1.14976 1.86405 1.46453 1.19204 0.82187 0.92529 1.20727 1.41861 1.06035 1.08802 1.55143 0.73485 1.21943 0.99838 0.82908 1.05769 1.20686 0.90827 0.99440 1.12897 1.19086 0.94066 0.89769 1.01514 1.20582 0.93542 0.93103 1.03792 1.22989 1.03221 0.95073 0.99894 1.22966 1.02398 1.03540 0.91597 0.92790 0.96174 0.96180 0.92216 0.92228 0.91341 0.91342 0.80885 0.83830 0.85725 0.88683 0.88639 0.88570 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 10 C -0.11 -2.25 5.53 -26.74 -0.15 -2.40 16 11 C 0.07 1.33 5.48 37.15 0.20 1.53 16 12 O -0.36 -6.21 10.23 -41.03 -0.42 -6.63 16 13 C 0.53 8.78 7.93 34.05 0.27 9.05 16 14 O -0.50 -9.31 14.69 -19.36 -0.28 -9.59 16 15 C -0.04 -0.48 7.10 -81.99 -0.58 -1.07 16 16 N -0.52 -5.31 6.07 -9.53 -0.06 -5.37 16 17 H 0.43 3.51 8.96 -40.82 -0.37 3.15 16 18 C 0.03 0.27 11.87 -17.16 -0.20 0.07 16 19 C -0.21 -2.06 10.16 -39.98 -0.41 -2.46 16 20 C -0.04 -0.45 5.87 -104.12 -0.61 -1.07 16 21 C -0.09 -1.11 5.61 -91.77 -0.52 -1.62 16 22 C -0.17 -1.59 10.04 -26.69 -0.27 -1.86 16 23 C -0.17 -1.68 10.24 -26.69 -0.27 -1.95 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.02 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16 32 H 0.14 1.07 7.26 -52.49 -0.38 0.68 16 33 H 0.12 1.75 6.67 -51.93 -0.35 1.40 16 34 H 0.09 0.74 7.04 -51.93 -0.37 0.38 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 321.81 15.07 4.85 4.85 Total: -1.00 -32.29 321.81 -8.51 -40.79 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.23 Total: 0.33 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -3.08 Total: -14.80 kcal Atomic # 7 Polarization: -32.15 SS G_CDS: 0.68 Total: -31.47 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.70 Total: -16.22 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.29 -8.51 -40.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838461839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.482 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds