Wall clock time and date at job start Mon Mar 30 2020 07:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00045 * 2 1 4 4 H 1.48497 * 109.47009 * 239.99914 * 3 2 1 5 5 H 1.48499 * 109.47290 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47071 * 120.00220 * 3 2 1 7 7 C 1.37876 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47556 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47491 * 180.02562 * 10 9 7 12 12 O 1.45196 * 109.47628 * 179.97438 * 11 10 9 13 13 C 1.34895 * 117.00631 * 179.97438 * 12 11 10 14 14 O 1.21620 * 119.99347 * 359.97438 * 13 12 11 15 15 C 1.46487 * 120.00011 * 180.02562 * 13 12 11 16 16 N 1.37698 * 126.26826 * 0.02562 * 15 13 12 17 17 H 0.97005 * 125.63367 * 0.04007 * 16 15 13 18 18 C 1.34953 * 108.73259 * 180.02562 * 16 15 13 19 19 C 1.35485 * 108.98568 * 359.97438 * 18 16 15 20 20 C 1.38003 * 126.26098 * 180.02562 * 15 13 12 21 21 C 1.50702 * 126.51371 * 359.97438 * 20 15 13 22 22 C 1.53000 * 117.49567 * 188.77197 * 21 20 15 23 23 C 1.52998 * 117.49599 * 120.11035 * 21 20 15 24 24 H 0.96998 * 119.99609 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47520 * 59.99280 * 9 7 2 26 26 H 1.09007 * 109.46630 * 299.99680 * 9 7 2 27 27 H 1.08997 * 109.47413 * 59.99591 * 10 9 7 28 28 H 1.09007 * 109.46838 * 299.99490 * 10 9 7 29 29 H 1.09002 * 109.47565 * 59.99230 * 11 10 9 30 30 H 1.08999 * 109.46797 * 299.99872 * 11 10 9 31 31 H 1.08001 * 125.51306 * 179.97438 * 18 16 15 32 32 H 1.08001 * 126.08073 * 179.73240 * 19 18 16 33 33 H 1.08996 * 115.55093 * 334.44409 * 21 20 15 34 34 H 1.09000 * 117.50117 * 359.97438 * 22 21 20 35 35 H 1.09003 * 117.49699 * 145.02639 * 22 21 20 36 36 H 1.08994 * 117.50075 * 214.97807 * 23 21 20 37 37 H 1.08999 * 117.49960 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9871 -0.0033 12 8 2.4237 -6.0907 -0.0037 13 6 1.9081 -7.3373 -0.0047 14 8 0.7024 -7.4965 -0.0048 15 6 2.8005 -8.4990 -0.0046 16 7 4.1771 -8.4686 -0.0029 17 1 4.7248 -7.6680 -0.0011 18 6 4.6386 -9.7368 -0.0040 19 6 3.5854 -10.5891 -0.0056 20 6 2.4153 -9.8241 -0.0060 21 6 1.0019 -10.3471 -0.0075 22 6 0.8048 -11.8504 0.1980 23 6 0.5766 -11.2297 -1.1826 24 1 -0.4849 0.8401 0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 2.8712 -3.6048 0.8890 28 1 2.8725 -3.6040 -0.8910 29 1 0.8544 -5.0442 -0.8939 30 1 0.8526 -5.0454 0.8860 31 1 5.6792 -10.0258 -0.0035 32 1 3.6400 -11.6677 -0.0108 33 1 0.2528 -9.6786 0.4167 34 1 1.6973 -12.4611 0.3338 35 1 -0.0744 -12.1709 0.7571 36 1 -0.4524 -11.1422 -1.5312 37 1 1.3191 -11.4325 -1.9544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838461839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:23 Heat of formation + Delta-G solvation = -54.580624 kcal Electronic energy + Delta-G solvation = -18713.072637 eV Core-core repulsion = 15648.625121 eV Total energy + Delta-G solvation = -3064.447516 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.48253 -40.93236 -38.06314 -37.63145 -35.95729 -33.73300 -31.77245 -30.78667 -28.94108 -25.78538 -24.43819 -23.26305 -23.15440 -22.21906 -21.78137 -20.03744 -19.46206 -18.63372 -17.81686 -17.73144 -16.54397 -16.49052 -16.35146 -15.87791 -15.14074 -14.93131 -14.74417 -14.15035 -13.95020 -13.80915 -13.77103 -13.65455 -12.82173 -12.58518 -12.53271 -12.45059 -12.32241 -12.12012 -11.96835 -11.73446 -11.54110 -11.47122 -11.31158 -11.10240 -10.59026 -9.65309 -9.24865 -8.23648 -6.35852 0.14757 1.39761 1.43448 1.50557 1.54889 1.72243 1.96892 2.23062 2.40012 3.10089 3.12788 3.66436 3.84727 3.94626 4.00553 4.02600 4.16999 4.28211 4.35356 4.40293 4.56241 4.74715 4.77120 4.81651 4.89108 5.02771 5.04002 5.17740 5.26457 5.30542 5.43666 5.49454 5.59740 5.68937 5.77039 5.88569 6.16017 6.51724 6.65827 6.79876 7.33824 8.88507 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040147 B = 0.003143 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.264595 B = 8907.319392 C = 9509.300737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.026 3.974 10 C -0.092 4.092 11 C 0.081 3.919 12 O -0.361 6.361 13 C 0.525 3.475 14 O -0.533 6.533 15 C -0.084 4.084 16 N -0.520 5.520 17 H 0.434 0.566 18 C 0.068 3.932 19 C -0.227 4.227 20 C -0.036 4.036 21 C -0.126 4.126 22 C -0.150 4.150 23 C -0.166 4.166 24 H 0.265 0.735 25 H -0.004 1.004 26 H -0.004 1.004 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.223 0.777 32 H 0.170 0.830 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.674 -24.511 -0.368 26.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.084 0.916 9 C -0.011 4.011 10 C -0.129 4.129 11 C 0.008 3.992 12 O -0.278 6.278 13 C 0.373 3.627 14 O -0.424 6.424 15 C -0.194 4.194 16 N -0.116 5.116 17 H 0.274 0.726 18 C -0.071 4.071 19 C -0.250 4.250 20 C -0.045 4.045 21 C -0.144 4.144 22 C -0.187 4.187 23 C -0.203 4.203 24 H 0.074 0.926 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.240 0.760 32 H 0.188 0.812 33 H 0.111 0.889 34 H 0.134 0.866 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.218 -24.199 -0.367 26.270 hybrid contribution -0.264 1.719 0.020 1.739 sum 9.954 -22.480 -0.347 24.588 Atomic orbital electron populations 1.70098 1.07941 1.28060 1.51281 1.26033 0.95798 1.03598 0.94511 0.85425 0.78195 0.77661 0.79329 1.18966 1.20912 1.18976 1.21590 0.93770 0.91810 1.51149 0.91564 1.18929 0.94262 0.92479 0.95451 1.21452 0.98740 0.90148 1.02569 1.23138 0.90928 0.83363 1.01803 1.86518 1.41917 1.15128 1.84255 1.20339 0.86947 0.82678 0.72738 1.90835 1.16490 1.86616 1.48481 1.18957 0.83572 0.91557 1.25291 1.41922 1.04712 1.10141 1.54790 0.72571 1.22797 1.01708 0.81439 1.01127 1.21049 0.89792 1.00867 1.13316 1.19416 0.95062 0.89847 1.00195 1.20547 0.93219 0.94540 1.06138 1.23103 1.04309 0.92643 0.98638 1.23031 1.02605 1.02649 0.91988 0.92629 0.98532 0.98539 0.91367 0.91380 0.92006 0.91996 0.76027 0.81210 0.88929 0.86610 0.87780 0.88600 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 3 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 7 C -0.55 -31.03 9.11 25.60 0.23 -30.80 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.09 -3.85 5.53 30.59 0.17 -3.68 16 11 C 0.08 3.16 5.48 71.98 0.39 3.55 16 12 O -0.36 -12.59 10.23 -58.10 -0.59 -13.19 16 13 C 0.53 18.16 7.93 69.97 0.55 18.72 16 14 O -0.53 -21.31 14.69 19.44 0.29 -21.02 16 15 C -0.08 -2.28 7.10 40.32 0.29 -1.99 16 16 N -0.52 -9.44 6.07 -184.06 -1.12 -10.56 16 17 H 0.43 6.26 8.96 -92.70 -0.83 5.43 16 18 C 0.07 0.83 11.87 83.58 0.99 1.82 16 19 C -0.23 -3.60 10.16 22.01 0.22 -3.37 16 20 C -0.04 -0.88 5.87 -19.54 -0.11 -0.99 16 21 C -0.13 -3.06 5.61 -11.54 -0.06 -3.13 16 22 C -0.15 -2.46 10.04 30.62 0.31 -2.16 16 23 C -0.17 -3.18 10.24 30.62 0.31 -2.87 16 24 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 25 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 26 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 27 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 29 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.22 0.45 8.06 -2.91 -0.02 0.43 16 32 H 0.17 1.73 7.26 -2.91 -0.02 1.71 16 33 H 0.09 2.83 6.67 -2.39 -0.02 2.81 16 34 H 0.12 1.41 7.04 -2.39 -0.02 1.40 16 35 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -72.53 321.81 5.03 -67.49 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.24 Total: 11.21 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 3.91 Total: -22.99 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: -0.83 Total: -67.57 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.31 Total: -34.21 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -72.53 5.03 -67.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838461839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.911 kcal (2) G-P(sol) polarization free energy of solvation -72.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds