Wall clock time and date at job start Mon Mar 30 2020 07:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.31892 * 119.61926 * 2 1 4 4 C 1.31856 * 121.72536 * 180.30857 * 3 2 1 5 5 C 1.38225 * 120.76634 * 359.71269 * 4 3 2 6 6 C 1.38632 * 119.16089 * 359.97438 * 5 4 3 7 7 C 1.38184 * 119.62071 * 179.73918 * 2 1 3 8 8 C 1.50704 * 120.41529 * 359.97024 * 7 2 1 9 9 O 1.45196 * 109.47016 * 179.72971 * 8 7 2 10 10 C 1.34234 * 116.99938 * 179.97438 * 9 8 7 11 11 O 1.20822 * 119.99973 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.00068 * 179.97438 * 10 9 8 13 13 C 1.52992 * 109.47257 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47274 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.46907 * 179.97438 * 14 13 12 16 16 H 1.07993 * 120.00411 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99549 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00388 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99824 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47360 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47339 * 119.99977 * 19 17 15 22 22 H 1.48509 * 109.47101 * 239.99886 * 19 17 15 23 23 H 1.08999 * 109.47419 * 270.26608 * 1 2 3 24 24 H 1.09002 * 109.47351 * 30.26598 * 1 2 3 25 25 H 1.09004 * 109.47430 * 150.26371 * 1 2 3 26 26 H 1.07995 * 119.61684 * 179.72560 * 4 3 2 27 27 H 1.07996 * 120.42135 * 179.97438 * 5 4 3 28 28 H 1.07996 * 120.79400 * 179.97438 * 6 5 4 29 29 H 1.08996 * 109.46943 * 59.72726 * 8 7 2 30 30 H 1.08999 * 109.47285 * 299.72866 * 8 7 2 31 31 H 1.09004 * 109.46932 * 300.00373 * 12 10 9 32 32 H 1.08997 * 109.47392 * 59.99712 * 12 10 9 33 33 H 1.09004 * 109.47330 * 299.99977 * 13 12 10 34 34 H 1.09005 * 109.47124 * 59.99773 * 13 12 10 35 35 H 1.08999 * 109.46783 * 300.00124 * 14 13 12 36 36 H 1.09000 * 109.46608 * 60.00231 * 14 13 12 37 37 H 0.96998 * 120.00131 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4764 1.1950 -0.0060 5 6 4.2267 0.0341 -0.0067 6 6 3.5766 -1.1903 -0.0003 7 6 2.1899 -1.2012 0.0055 8 6 1.4372 -2.5068 0.0121 9 8 2.3814 -3.6098 0.0105 10 6 1.8691 -4.8506 0.0164 11 8 0.6714 -5.0096 0.0222 12 6 2.7879 -6.0451 0.0146 13 6 1.9554 -7.3288 0.0217 14 6 2.8882 -8.5416 0.0192 15 6 2.0682 -9.8059 0.0268 16 1 0.9897 -9.7501 0.0324 17 6 2.6949 -11.0340 0.0267 18 7 4.0083 -11.1021 0.0194 19 14 1.6785 -12.6013 0.0353 20 1 0.2345 -12.2548 0.0422 21 1 1.9906 -13.4004 -1.1768 22 1 2.0025 -13.3947 1.2482 23 1 -0.3634 0.0048 1.0276 24 1 -0.3634 0.8876 -0.5180 25 1 -0.3634 -0.8924 -0.5097 26 1 3.9752 2.1529 -0.0103 27 1 5.3056 0.0803 -0.0121 28 1 4.1367 -2.1137 -0.0011 29 1 0.8065 -2.5671 -0.8748 30 1 0.8146 -2.5628 0.9050 31 1 3.4120 -6.0221 -0.8787 32 1 3.4214 -6.0176 0.9011 33 1 1.3310 -7.3520 0.9148 34 1 1.3222 -7.3561 -0.8651 35 1 3.5123 -8.5181 -0.8741 36 1 3.5217 -8.5145 0.9058 37 1 4.4492 -11.9661 0.0196 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847049484.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:54 Heat of formation + Delta-G solvation = -76.674749 kcal Electronic energy + Delta-G solvation = -18492.975068 eV Core-core repulsion = 15427.569479 eV Total energy + Delta-G solvation = -3065.405589 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.84048 -40.09400 -36.70529 -34.35214 -33.65869 -33.10835 -32.13325 -28.79822 -27.99527 -26.80228 -24.22815 -22.84066 -21.99434 -21.06870 -19.86928 -17.64461 -17.07332 -16.71339 -16.54733 -16.23979 -15.84766 -15.08259 -14.84430 -14.42092 -14.25163 -13.61549 -13.39865 -13.07788 -12.82822 -12.74008 -12.52831 -12.29295 -11.94829 -11.59772 -11.50328 -10.98043 -10.87615 -10.72489 -10.58349 -10.31202 -9.95880 -9.78939 -9.77973 -9.43456 -9.10933 -9.09182 -8.37281 -6.02455 -4.04383 0.74824 1.00537 2.40462 2.65062 3.30879 3.38448 3.43632 3.44593 3.98346 4.30168 4.45358 4.52418 4.62922 4.79683 4.94605 5.01772 5.10591 5.23515 5.29331 5.30134 5.33899 5.40624 5.56057 5.58539 5.74158 5.86413 5.95389 6.06950 6.38998 6.49216 6.57408 6.77424 7.03219 7.63740 7.66584 7.74841 7.91983 7.97329 8.39860 9.02656 9.60041 11.09038 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.049871 B = 0.002851 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.313167 B = 9818.178252 C =10343.132529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.135 3.865 3 N -0.484 5.484 4 C 0.099 3.901 5 C -0.179 4.179 6 C -0.050 4.050 7 C -0.143 4.143 8 C 0.112 3.888 9 O -0.362 6.362 10 C 0.462 3.538 11 O -0.505 6.505 12 C -0.111 4.111 13 C -0.100 4.100 14 C 0.021 3.979 15 C -0.519 4.519 16 H 0.057 0.943 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.157 0.843 27 H 0.137 0.863 28 H 0.147 0.853 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.649 23.330 -0.052 23.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.003 4.003 3 N -0.193 5.193 4 C -0.057 4.057 5 C -0.198 4.198 6 C -0.076 4.076 7 C -0.145 4.145 8 C 0.038 3.962 9 O -0.280 6.280 10 C 0.306 3.694 11 O -0.392 6.392 12 C -0.149 4.149 13 C -0.138 4.138 14 C -0.016 4.016 15 C -0.558 4.558 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.100 0.900 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.174 0.826 27 H 0.155 0.845 28 H 0.165 0.835 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.369 23.970 -0.050 24.009 hybrid contribution 0.070 -1.601 0.015 1.603 sum -1.298 22.369 -0.035 22.407 Atomic orbital electron populations 1.20818 0.88675 1.03870 1.03512 1.20994 0.97021 0.87312 0.94972 1.67575 1.10208 1.28521 1.13040 1.22770 0.89408 0.98628 0.94942 1.22185 1.01730 0.93262 1.02663 1.21553 0.93636 0.99114 0.93304 1.20486 0.95193 0.94551 1.04240 1.21573 0.90009 0.81327 1.03290 1.86482 1.41096 1.15625 1.84769 1.24452 0.89591 0.83709 0.71663 1.90652 1.17240 1.86242 1.45061 1.21714 0.98208 0.89617 1.05330 1.21590 0.98416 0.91744 1.02031 1.19132 0.94369 0.90696 0.97446 1.21270 0.93242 0.90867 1.50397 0.92472 1.25020 0.94919 0.99263 0.95293 1.69966 1.07767 1.24837 1.51015 0.86527 0.80550 0.83318 0.77571 1.19683 1.20997 1.21003 0.89958 0.90075 0.90447 0.82624 0.84470 0.83526 0.89583 0.89593 0.88004 0.88004 0.92383 0.92387 0.96340 0.96342 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.77 36.00 0.35 -0.54 16 2 C 0.13 1.41 6.78 -82.59 -0.56 0.85 16 3 N -0.48 -5.31 10.27 -9.48 -0.10 -5.41 16 4 C 0.10 0.89 11.18 -17.55 -0.20 0.69 16 5 C -0.18 -1.50 10.11 -39.44 -0.40 -1.90 16 6 C -0.05 -0.50 9.49 -39.27 -0.37 -0.88 16 7 C -0.14 -1.53 5.90 -104.48 -0.62 -2.14 16 8 C 0.11 1.27 4.59 36.01 0.17 1.43 16 9 O -0.36 -4.77 8.77 -39.27 -0.34 -5.12 16 10 C 0.46 7.21 7.96 36.01 0.29 7.49 16 11 O -0.51 -9.23 15.73 -18.75 -0.29 -9.53 16 12 C -0.11 -1.76 5.81 -27.89 -0.16 -1.92 16 13 C -0.10 -2.05 4.44 -26.73 -0.12 -2.17 16 14 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 15 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 19 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.55 6.63 -51.93 -0.34 0.21 16 26 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 27 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 28 H 0.15 1.39 7.10 -52.49 -0.37 1.02 16 29 H 0.09 0.93 7.47 -51.93 -0.39 0.54 16 30 H 0.09 0.93 8.13 -51.93 -0.42 0.51 16 31 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 34 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 321.03 15.07 4.84 4.84 Total: -1.00 -32.54 321.03 -7.65 -40.19 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -5.29 Total: -3.51 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -2.17 Total: -12.20 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.64 Total: -31.31 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.64 Total: -14.65 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.54 -7.65 -40.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847049484.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.484 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds